Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_T7_P10
(854 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5) ne... 226 1e-59
At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3) ne... 226 1e-59
At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly ide... 225 4e-59
At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly ide... 224 5e-59
At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2) id... 224 5e-59
At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4) ne... 224 5e-59
At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly ide... 137 1e-32
At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly iden... 78 7e-15
At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly iden... 78 9e-15
At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) near... 77 2e-14
At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) near... 77 2e-14
At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8) ide... 77 2e-14
At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical t... 77 2e-14
At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly iden... 76 3e-14
At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly iden... 76 3e-14
At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly iden... 76 3e-14
At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin... 37 0.020
At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin... 35 0.060
At1g29200.1 68414.m03573 hypothetical protein contains Pfam PF03... 28 9.1
>At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 226 bits (553), Expect = 1e-59
Identities = 103/144 (71%), Positives = 111/144 (77%)
Frame = -3
Query: 621 VLSPPTRW*NAXPRHGKYMACCMLYRGDVVPKDVXXXXATIKTKRTIXXVDWCPTGFKVG 442
V P + PRHGKYMACC++YRGDVVPKDV TIKTKRT+ VDWCPTGFK G
Sbjct: 295 VFEPASMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVGTIKTKRTVQFVDWCPTGFKCG 354
Query: 441 IXYQPPXVVPGGXLAKVQXAACMLSXTTAXAEXWXXLDHKFDLMYAKXXFVHWXVGEGME 262
I YQPP VVPGG LAKVQ A CM+S TA AE + +DHKFDLMYAK FVHW VGEGME
Sbjct: 355 INYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGME 414
Query: 261 EGEFSEAREXLAALEKDYEEVGMD 190
EGEFSEARE LAALEKDYEEVG +
Sbjct: 415 EGEFSEAREDLAALEKDYEEVGAE 438
Score = 53.2 bits (122), Expect = 2e-07
Identities = 26/45 (57%), Positives = 27/45 (60%)
Frame = -2
Query: 718 PRIXFPXVXXXPVIFAEXAYHEQXSXAGITNACFEPANQMVKCXP 584
PRI F PVI A AYHEQ S ITNA FEPA+ M KC P
Sbjct: 263 PRIHFMLSSYAPVISAAKAYHEQLSVPEITNAVFEPASMMAKCDP 307
>At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 226 bits (553), Expect = 1e-59
Identities = 103/144 (71%), Positives = 111/144 (77%)
Frame = -3
Query: 621 VLSPPTRW*NAXPRHGKYMACCMLYRGDVVPKDVXXXXATIKTKRTIXXVDWCPTGFKVG 442
V P + PRHGKYMACC++YRGDVVPKDV TIKTKRT+ VDWCPTGFK G
Sbjct: 295 VFEPASMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVGTIKTKRTVQFVDWCPTGFKCG 354
Query: 441 IXYQPPXVVPGGXLAKVQXAACMLSXTTAXAEXWXXLDHKFDLMYAKXXFVHWXVGEGME 262
I YQPP VVPGG LAKVQ A CM+S TA AE + +DHKFDLMYAK FVHW VGEGME
Sbjct: 355 INYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGME 414
Query: 261 EGEFSEAREXLAALEKDYEEVGMD 190
EGEFSEARE LAALEKDYEEVG +
Sbjct: 415 EGEFSEAREDLAALEKDYEEVGAE 438
Score = 53.2 bits (122), Expect = 2e-07
Identities = 26/45 (57%), Positives = 27/45 (60%)
Frame = -2
Query: 718 PRIXFPXVXXXPVIFAEXAYHEQXSXAGITNACFEPANQMVKCXP 584
PRI F PVI A AYHEQ S ITNA FEPA+ M KC P
Sbjct: 263 PRIHFMLSSYAPVISAAKAYHEQLSVPEITNAVFEPASMMAKCDP 307
>At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly
identical to SP|P11139 Tubulin alpha-1 chain
{Arabidopsis thaliana}
Length = 450
Score = 225 bits (549), Expect = 4e-59
Identities = 105/151 (69%), Positives = 111/151 (73%)
Frame = -3
Query: 648 FPXPGSQTHVLSPPTRW*NAXPRHGKYMACCMLYRGDVVPKDVXXXXATIKTKRTIXXVD 469
F P T V P PRHGKYMACC++YRGDVVPKDV A IK KRTI VD
Sbjct: 286 FSVPEITTSVFEPSNMMAKCDPRHGKYMACCLMYRGDVVPKDVNTAVAAIKAKRTIQFVD 345
Query: 468 WCPTGFKVGIXYQPPXVVPGGXLAKVQXAACMLSXTTAXAEXWXXLDHKFDLMYAKXXFV 289
WCPTGFK GI YQPP VVPGG LAKVQ A CM+S TA AE + +DHKFDLMY+K FV
Sbjct: 346 WCPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYSKRAFV 405
Query: 288 HWXVGEGMEEGEFSEAREXLAALEKDYEEVG 196
HW VGEGMEEGEFSEARE LAALEKDYEEVG
Sbjct: 406 HWYVGEGMEEGEFSEAREDLAALEKDYEEVG 436
Score = 49.2 bits (112), Expect = 3e-06
Identities = 23/45 (51%), Positives = 26/45 (57%)
Frame = -2
Query: 718 PRIXFPXVXXXPVIFAEXAYHEQXSXAGITNACFEPANQMVKCXP 584
PRI F PVI + AYHEQ S IT + FEP+N M KC P
Sbjct: 263 PRIHFMLSSYAPVISSAKAYHEQFSVPEITTSVFEPSNMMAKCDP 307
>At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 450
Score = 224 bits (548), Expect = 5e-59
Identities = 101/132 (76%), Positives = 109/132 (82%)
Frame = -3
Query: 585 PRHGKYMACCMLYRGDVVPKDVXXXXATIKTKRTIXXVDWCPTGFKVGIXYQPPXVVPGG 406
PRHGKYMACC++YRGDVVPKDV TIKTKRTI VDWCPTGFK GI YQPP VVPGG
Sbjct: 307 PRHGKYMACCLMYRGDVVPKDVNAAVGTIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGG 366
Query: 405 XLAKVQXAACMLSXTTAXAEXWXXLDHKFDLMYAKXXFVHWXVGEGMEEGEFSEAREXLA 226
LAKVQ A CM+S +T+ AE + +DHKFDLMYAK FVHW VGEGMEEGEFSEARE LA
Sbjct: 367 DLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLA 426
Query: 225 ALEKDYEEVGMD 190
ALEKDYEEVG +
Sbjct: 427 ALEKDYEEVGAE 438
Score = 55.2 bits (127), Expect = 5e-08
Identities = 26/45 (57%), Positives = 29/45 (64%)
Frame = -2
Query: 718 PRIXFPXVXXXPVIFAEXAYHEQXSXAGITNACFEPANQMVKCXP 584
PRI F PVI AE A+HEQ S A ITN+ FEPA+ M KC P
Sbjct: 263 PRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPASMMAKCDP 307
>At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2)
identical to tubulin alpha-2/alpha-4 chain SP|P29510
GB:P29510 from [Arabidopsis thaliana]
Length = 450
Score = 224 bits (548), Expect = 5e-59
Identities = 101/132 (76%), Positives = 109/132 (82%)
Frame = -3
Query: 585 PRHGKYMACCMLYRGDVVPKDVXXXXATIKTKRTIXXVDWCPTGFKVGIXYQPPXVVPGG 406
PRHGKYMACC++YRGDVVPKDV TIKTKRTI VDWCPTGFK GI YQPP VVPGG
Sbjct: 307 PRHGKYMACCLMYRGDVVPKDVNAAVGTIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGG 366
Query: 405 XLAKVQXAACMLSXTTAXAEXWXXLDHKFDLMYAKXXFVHWXVGEGMEEGEFSEAREXLA 226
LAKVQ A CM+S +T+ AE + +DHKFDLMYAK FVHW VGEGMEEGEFSEARE LA
Sbjct: 367 DLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLA 426
Query: 225 ALEKDYEEVGMD 190
ALEKDYEEVG +
Sbjct: 427 ALEKDYEEVGAE 438
Score = 55.2 bits (127), Expect = 5e-08
Identities = 26/45 (57%), Positives = 29/45 (64%)
Frame = -2
Query: 718 PRIXFPXVXXXPVIFAEXAYHEQXSXAGITNACFEPANQMVKCXP 584
PRI F PVI AE A+HEQ S A ITN+ FEPA+ M KC P
Sbjct: 263 PRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPASMMAKCDP 307
>At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4)
nearly identical to SP:P29510 Tubulin alpha-2/alpha-4
chain from [Arabidopsis thaliana]
Length = 450
Score = 224 bits (548), Expect = 5e-59
Identities = 101/132 (76%), Positives = 109/132 (82%)
Frame = -3
Query: 585 PRHGKYMACCMLYRGDVVPKDVXXXXATIKTKRTIXXVDWCPTGFKVGIXYQPPXVVPGG 406
PRHGKYMACC++YRGDVVPKDV TIKTKRTI VDWCPTGFK GI YQPP VVPGG
Sbjct: 307 PRHGKYMACCLMYRGDVVPKDVNAAVGTIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGG 366
Query: 405 XLAKVQXAACMLSXTTAXAEXWXXLDHKFDLMYAKXXFVHWXVGEGMEEGEFSEAREXLA 226
LAKVQ A CM+S +T+ AE + +DHKFDLMYAK FVHW VGEGMEEGEFSEARE LA
Sbjct: 367 DLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLA 426
Query: 225 ALEKDYEEVGMD 190
ALEKDYEEVG +
Sbjct: 427 ALEKDYEEVGAE 438
Score = 55.2 bits (127), Expect = 5e-08
Identities = 26/45 (57%), Positives = 29/45 (64%)
Frame = -2
Query: 718 PRIXFPXVXXXPVIFAEXAYHEQXSXAGITNACFEPANQMVKCXP 584
PRI F PVI AE A+HEQ S A ITN+ FEPA+ M KC P
Sbjct: 263 PRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPASMMAKCDP 307
>At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 427
Score = 137 bits (331), Expect = 1e-32
Identities = 60/80 (75%), Positives = 65/80 (81%)
Frame = -3
Query: 585 PRHGKYMACCMLYRGDVVPKDVXXXXATIKTKRTIXXVDWCPTGFKVGIXYQPPXVVPGG 406
PRHGKYMACC++YRGDVVPKDV TIKTKRTI VDWCPTGFK GI YQPP VVPGG
Sbjct: 307 PRHGKYMACCLMYRGDVVPKDVNAAVGTIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGG 366
Query: 405 XLAKVQXAACMLSXTTAXAE 346
LAKVQ A CM+S +T+ AE
Sbjct: 367 DLAKVQRAVCMISNSTSVAE 386
Score = 55.2 bits (127), Expect = 5e-08
Identities = 26/45 (57%), Positives = 29/45 (64%)
Frame = -2
Query: 718 PRIXFPXVXXXPVIFAEXAYHEQXSXAGITNACFEPANQMVKCXP 584
PRI F PVI AE A+HEQ S A ITN+ FEPA+ M KC P
Sbjct: 263 PRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPASMMAKCDP 307
>At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly
identical to SP|P29513 Tubulin beta-5 chain {Arabidopsis
thaliana}
Length = 449
Score = 78.2 bits (184), Expect = 7e-15
Identities = 38/130 (29%), Positives = 65/130 (50%)
Frame = -3
Query: 591 AXPRHGKYMACCMLYRGDVVPKDVXXXXATIKTKRTIXXVDWCPTGFKVGIXYQPPXVVP 412
A PRHG+Y+ ++RG + K+V I+ K + V+W P K + PP
Sbjct: 304 ADPRHGRYLTASAIFRGQMSTKEVDEQILNIQNKNSSYFVEWIPNNVKSSVCDIPPK--- 360
Query: 411 GGXLAKVQXAACMLSXTTAXAEXWXXLDHKFDLMYAKXXFVHWXVGEGMEEGEFSEAREX 232
++ AA + +T+ E + + +F M+ + F+HW GEGM+E EF+EA
Sbjct: 361 -----GLKMAATFVGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESN 415
Query: 231 LAALEKDYEE 202
+ L +Y++
Sbjct: 416 MNDLVAEYQQ 425
>At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly
identical to SP|P12411 Tubulin beta-1 chain {Arabidopsis
thaliana}
Length = 447
Score = 77.8 bits (183), Expect = 9e-15
Identities = 36/130 (27%), Positives = 65/130 (50%)
Frame = -3
Query: 591 AXPRHGKYMACCMLYRGDVVPKDVXXXXATIKTKRTIXXVDWCPTGFKVGIXYQPPXVVP 412
A PRHG+Y+ ++RG + K+V ++ K + V+W P K + PP
Sbjct: 304 ADPRHGRYLTASAMFRGKMSTKEVDEQILNVQNKNSSYFVEWIPNNVKSSVCDIPP---- 359
Query: 411 GGXLAKVQXAACMLSXTTAXAEXWXXLDHKFDLMYAKXXFVHWXVGEGMEEGEFSEAREX 232
++ A+ + +T+ E + + +F M+ + F+HW GEGM+E EF+EA
Sbjct: 360 ----TGIKMASTFVGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESN 415
Query: 231 LAALEKDYEE 202
+ L +Y++
Sbjct: 416 MNDLVSEYQQ 425
>At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 76.6 bits (180), Expect = 2e-14
Identities = 36/130 (27%), Positives = 65/130 (50%)
Frame = -3
Query: 591 AXPRHGKYMACCMLYRGDVVPKDVXXXXATIKTKRTIXXVDWCPTGFKVGIXYQPPXVVP 412
A PRHG+Y+ ++RG + K+V ++ K + V+W P K + PP
Sbjct: 303 ADPRHGRYLTASAMFRGKMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSTVCDIPP---- 358
Query: 411 GGXLAKVQXAACMLSXTTAXAEXWXXLDHKFDLMYAKXXFVHWXVGEGMEEGEFSEAREX 232
++ A+ + +T+ E + + +F M+ + F+HW GEGM+E EF+EA
Sbjct: 359 ----TGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESN 414
Query: 231 LAALEKDYEE 202
+ L +Y++
Sbjct: 415 MNDLVSEYQQ 424
>At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 76.6 bits (180), Expect = 2e-14
Identities = 36/130 (27%), Positives = 65/130 (50%)
Frame = -3
Query: 591 AXPRHGKYMACCMLYRGDVVPKDVXXXXATIKTKRTIXXVDWCPTGFKVGIXYQPPXVVP 412
A PRHG+Y+ ++RG + K+V ++ K + V+W P K + PP
Sbjct: 303 ADPRHGRYLTASAMFRGKMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSTVCDIPP---- 358
Query: 411 GGXLAKVQXAACMLSXTTAXAEXWXXLDHKFDLMYAKXXFVHWXVGEGMEEGEFSEAREX 232
++ A+ + +T+ E + + +F M+ + F+HW GEGM+E EF+EA
Sbjct: 359 ----TGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESN 414
Query: 231 LAALEKDYEE 202
+ L +Y++
Sbjct: 415 MNDLVSEYQQ 424
>At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8)
identical to SP|P29516 Tubulin beta-8 chain {Arabidopsis
thaliana}; supporting cDNA gi|15451225|gb|AY054693.1|
Length = 449
Score = 76.6 bits (180), Expect = 2e-14
Identities = 36/130 (27%), Positives = 65/130 (50%)
Frame = -3
Query: 591 AXPRHGKYMACCMLYRGDVVPKDVXXXXATIKTKRTIXXVDWCPTGFKVGIXYQPPXVVP 412
A PRHG+Y+ ++RG + K+V ++ K + V+W P K + PP
Sbjct: 303 ADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSTVCDIPP---- 358
Query: 411 GGXLAKVQXAACMLSXTTAXAEXWXXLDHKFDLMYAKXXFVHWXVGEGMEEGEFSEAREX 232
++ A+ + +T+ E + + +F M+ + F+HW GEGM+E EF+EA
Sbjct: 359 ----TGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESN 414
Query: 231 LAALEKDYEE 202
+ L +Y++
Sbjct: 415 MNDLVSEYQQ 424
>At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical to
GB:M84704 SP|P29515 Tubulin beta-7 chain {Arabidopsis
thaliana}
Length = 449
Score = 76.6 bits (180), Expect = 2e-14
Identities = 36/130 (27%), Positives = 65/130 (50%)
Frame = -3
Query: 591 AXPRHGKYMACCMLYRGDVVPKDVXXXXATIKTKRTIXXVDWCPTGFKVGIXYQPPXVVP 412
A PRHG+Y+ ++RG + K+V ++ K + V+W P K + PP
Sbjct: 303 ADPRHGRYLTASAMFRGKMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSTVCDIPP---- 358
Query: 411 GGXLAKVQXAACMLSXTTAXAEXWXXLDHKFDLMYAKXXFVHWXVGEGMEEGEFSEAREX 232
++ A+ + +T+ E + + +F M+ + F+HW GEGM+E EF+EA
Sbjct: 359 ----TGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESN 414
Query: 231 LAALEKDYEE 202
+ L +Y++
Sbjct: 415 MNDLVSEYQQ 424
>At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly
identical to SP|P24636 Tubulin beta-4 chain {Arabidopsis
thaliana}
Length = 444
Score = 76.2 bits (179), Expect = 3e-14
Identities = 37/130 (28%), Positives = 66/130 (50%)
Frame = -3
Query: 591 AXPRHGKYMACCMLYRGDVVPKDVXXXXATIKTKRTIXXVDWCPTGFKVGIXYQPPXVVP 412
A PRHG+Y+ ++RG + K+V I+ K + V+W P K + + P
Sbjct: 303 ADPRHGRYLTASAVFRGKLSTKEVDEQMMNIQNKNSSYFVEWIPNNVKSSVC----DIAP 358
Query: 411 GGXLAKVQXAACMLSXTTAXAEXWXXLDHKFDLMYAKXXFVHWXVGEGMEEGEFSEAREX 232
G ++ A+ + +T+ E + + +F M+ + F+HW GEGM+E EF+EA
Sbjct: 359 KG----LKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESN 414
Query: 231 LAALEKDYEE 202
+ L +Y++
Sbjct: 415 MNDLVAEYQQ 424
>At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly
identical to SP|P29514 Tubulin beta-6 chain {Arabidopsis
thaliana}
Length = 449
Score = 76.2 bits (179), Expect = 3e-14
Identities = 36/130 (27%), Positives = 65/130 (50%)
Frame = -3
Query: 591 AXPRHGKYMACCMLYRGDVVPKDVXXXXATIKTKRTIXXVDWCPTGFKVGIXYQPPXVVP 412
A PRHG+Y+ ++RG + K+V ++ K + V+W P K + + P
Sbjct: 303 ADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVC----DIAP 358
Query: 411 GGXLAKVQXAACMLSXTTAXAEXWXXLDHKFDLMYAKXXFVHWXVGEGMEEGEFSEAREX 232
G + A+ + +T+ E + + +F M+ + F+HW GEGM+E EF+EA
Sbjct: 359 RG----LSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESN 414
Query: 231 LAALEKDYEE 202
+ L +Y++
Sbjct: 415 MNDLVSEYQQ 424
>At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly
identical to SP|P29517 Tubulin beta-9 chain {Arabidopsis
thaliana}
Length = 444
Score = 75.8 bits (178), Expect = 3e-14
Identities = 36/130 (27%), Positives = 66/130 (50%)
Frame = -3
Query: 591 AXPRHGKYMACCMLYRGDVVPKDVXXXXATIKTKRTIXXVDWCPTGFKVGIXYQPPXVVP 412
A PRHG+Y+ ++RG + K+V ++ K + V+W P K + + P
Sbjct: 303 ADPRHGRYLTASAVFRGKMSTKEVDEQMMNVQNKNSSYFVEWIPNNVKSSVC----DIAP 358
Query: 411 GGXLAKVQXAACMLSXTTAXAEXWXXLDHKFDLMYAKXXFVHWXVGEGMEEGEFSEAREX 232
G ++ A+ + +T+ E + + +F M+ + F+HW GEGM+E EF+EA
Sbjct: 359 TG----LKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESN 414
Query: 231 LAALEKDYEE 202
+ L +Y++
Sbjct: 415 MNDLVAEYQQ 424
>At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin
(TUBG2) identical to SP|P38558 Tubulin gamma-2 chain
(Gamma-2 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 36.7 bits (81), Expect = 0.020
Identities = 26/134 (19%), Positives = 57/134 (42%), Gaps = 4/134 (2%)
Frame = -3
Query: 594 NAXPRHGKYMACCMLYRGDVVPKDVXXXXATIKTKRTIXXVDWCPTGFKVGIXYQPPXVV 415
N KY++ + +G+V P V I+ ++ + +DW P +V + + P V
Sbjct: 311 NKEASQAKYISILNIIQGEVDPTQVHESLQRIRERKLVNFIDWGPASIQVALSKKSPYV- 369
Query: 414 PGGXLAKVQXAACMLSXTTAXAEXWXXLDHKFDLMYAKXXFV----HWXVGEGMEEGEFS 247
+ + ML+ T+ + ++D + K F+ + + + EF
Sbjct: 370 ----QTSHRVSGLMLASHTSIRHLFSRCLSQYDKLRKKQAFLDNYRKFPMFADNDLSEFD 425
Query: 246 EAREXLAALEKDYE 205
E+R+ + +L +Y+
Sbjct: 426 ESRDIIESLVDEYK 439
>At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin
(TUBG1) identical to SP|P38557 Tubulin gamma-1 chain
(Gamma-1 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 35.1 bits (77), Expect = 0.060
Identities = 25/134 (18%), Positives = 57/134 (42%), Gaps = 4/134 (2%)
Frame = -3
Query: 594 NAXPRHGKYMACCMLYRGDVVPKDVXXXXATIKTKRTIXXVDWCPTGFKVGIXYQPPXVV 415
N KY++ + +G+V P V I+ ++ + ++W P +V + + P V
Sbjct: 311 NKEASQAKYISILNIIQGEVDPTQVHESLQRIRERKLVNFIEWGPASIQVALSKKSPYVQ 370
Query: 414 PGGXLAKVQXAACMLSXTTAXAEXWXXLDHKFDLMYAKXXFV----HWXVGEGMEEGEFS 247
+ + ML+ T+ + ++D + K F+ + + + EF
Sbjct: 371 TAH-----RVSGLMLASHTSIRHLFSKCLSQYDKLRKKQAFLDNYRKFPMFADNDLSEFD 425
Query: 246 EAREXLAALEKDYE 205
E+R+ + +L +Y+
Sbjct: 426 ESRDIIESLVDEYK 439
>At1g29200.1 68414.m03573 hypothetical protein contains Pfam
PF03138: Plant protein family. The function of this
family of plant proteins is unknown;
Length = 698
Score = 27.9 bits (59), Expect = 9.1
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = +1
Query: 430 LVXDTDLETGWTPVDXXDSTLGFDGSXGRXHILGY 534
LV DT+L TPVD + L G H+ GY
Sbjct: 360 LVTDTELVKEATPVDYIEHVLPLLKKYGMVHLFGY 394
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,475,477
Number of Sequences: 28952
Number of extensions: 205792
Number of successful extensions: 505
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 455
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 496
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1989897600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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