Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_P06
         (865 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    23   4.8  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    22   6.3  

>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 14/80 (17%), Positives = 35/80 (43%)
 Frame = -3

Query: 542 YDKGRLSKEEIERMVNEAEKYRNEDDKQKETIQAKNALESYCFSMKSTMEDEKLKEKISD 363
           Y+K    KE++       E+Y    ++++++ + +     Y  + K    D   +E+   
Sbjct: 252 YEKLHNEKEKLLEERTSRERYSRSREREQKSYKNEREYRKYGETSKERSRDRTERER--- 308

Query: 362 SDKQTILDKCNDTIKWLDSN 303
           S +  I+   ++  K+ + N
Sbjct: 309 SKEPKIISSLSNNYKYSNYN 328


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 8/25 (32%), Positives = 17/25 (68%)
 Frame = -2

Query: 582 EKSTXQGEQDHHYLRQRSSLQGRDR 508
           E+++ + E+++   R+RS  + RDR
Sbjct: 279 EQNSYKNEREYRKYRERSKERSRDR 303


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 201,480
Number of Sequences: 438
Number of extensions: 4249
Number of successful extensions: 15
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27916710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)