Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_P05
         (851 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9G1.04 |oxa101|oxa1, oxa1-1, oxa1sp1|mitochondrial inner mem...    27   2.6  
SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit S...    27   3.4  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    26   7.8  

>SPAC9G1.04 |oxa101|oxa1, oxa1-1, oxa1sp1|mitochondrial inner
           membrane translocase Oxa101|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 374

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = -2

Query: 160 VYFKYNANSLCLFRICFTYYACILDDFYL*RPISRFCI 47
           +Y K+N N   +F +  T  A     FY  R +SR  +
Sbjct: 151 IYLKHNVNPFAIFILPLTQSAVFFSFFYAIRKMSRLSV 188


>SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit Sfc9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 673

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = -3

Query: 327 CTCSADGKSVFC 292
           CTCS DGK  FC
Sbjct: 17  CTCSCDGKLAFC 28


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1841

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = -2

Query: 625  EGQDFSCTRMDCNALNSNHNAEPFNGDRTKR 533
            +G+  S T  D ++L  ++  +PFNG++ +R
Sbjct: 1538 KGRSASYTFSDPSSLEDSNRQKPFNGEKFRR 1568


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,994,129
Number of Sequences: 5004
Number of extensions: 56289
Number of successful extensions: 122
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)