Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_T7_P05
(851 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0296 + 2284385-2285629,2287632-2288594 30 2.7
01_06_1406 - 37073548-37073822,37073892-37074111,37074200-370742... 29 4.7
01_01_0345 + 2752790-2753102,2753309-2754079,2755795-2756078 29 4.7
08_02_0733 + 20546072-20546325,20546924-20547017,20547441-205476... 29 6.2
01_07_0364 - 43068466-43068561,43068676-43068747 29 6.2
01_06_1814 + 40061080-40061395,40062243-40062641,40062758-40062864 29 6.2
01_06_1454 + 37498513-37499154 29 6.2
03_01_0526 + 3956909-3957071,3957262-3957317,3957398-3957462,395... 28 8.2
>03_01_0296 + 2284385-2285629,2287632-2288594
Length = 735
Score = 29.9 bits (64), Expect = 2.7
Identities = 12/38 (31%), Positives = 23/38 (60%)
Frame = +3
Query: 516 GF*LTSLLVLSPLKGSALWLLLRALQSIRVQEKSWPSL 629
GF + S+++ + G +LW++ A+ R+ KS P+L
Sbjct: 342 GFPVVSVVLFAATLGVSLWIISSAIHHYRIPRKSTPNL 379
>01_06_1406 -
37073548-37073822,37073892-37074111,37074200-37074246,
37074404-37074576,37075161-37075238,37075751-37075813,
37075889-37075961,37076150-37076189,37076302-37076368,
37076719-37078472,37079128-37079230,37080041-37080078,
37080221-37080347,37081944-37082152
Length = 1088
Score = 29.1 bits (62), Expect = 4.7
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = -3
Query: 576 VTTMLSPSTATELKEK*VRSQPRAFPAPS 490
++T LSP T ++ K R +PR +PAPS
Sbjct: 323 LSTALSPIALTCMEPKKKRGRPRKYPAPS 351
>01_01_0345 + 2752790-2753102,2753309-2754079,2755795-2756078
Length = 455
Score = 29.1 bits (62), Expect = 4.7
Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = +2
Query: 416 GHRIKVQVACRPSSVQRHTL--QPXIVDGAGNARG 514
GH ++ V R S + H L QP VDGAG RG
Sbjct: 251 GHVVRASVGERASILLSHPLPIQPNCVDGAGVCRG 285
>08_02_0733 +
20546072-20546325,20546924-20547017,20547441-20547624,
20547722-20547831,20548328-20548423,20548525-20548679,
20548743-20548986,20549159-20549314,20549600-20549829,
20552213-20552316,20552420-20552505,20552776-20553066,
20553383-20553475,20553640-20553735,20553838-20553939,
20554196-20554266,20554784-20555035,20555786-20556529,
20557038-20557119,20557192-20557347,20557446-20557655,
20558282-20558665
Length = 1397
Score = 28.7 bits (61), Expect = 6.2
Identities = 16/32 (50%), Positives = 19/32 (59%)
Frame = +3
Query: 384 GRAHASPPSPGGIASRCKWRVGPRQYSGIRCS 479
GR HASP SP G A R + V + SG +CS
Sbjct: 520 GRWHASP-SPEGFAGRGEREVARQGTSGSKCS 550
>01_07_0364 - 43068466-43068561,43068676-43068747
Length = 55
Score = 28.7 bits (61), Expect = 6.2
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +2
Query: 233 VLVYAAFMWGVMSWSQRRSVQKTLFPS 313
+LV+AA + G M W QR+ K FPS
Sbjct: 16 LLVWAAALQGHMMWMQRQDAFKQKFPS 42
>01_06_1814 + 40061080-40061395,40062243-40062641,40062758-40062864
Length = 273
Score = 28.7 bits (61), Expect = 6.2
Identities = 30/124 (24%), Positives = 41/124 (33%), Gaps = 2/124 (1%)
Frame = -3
Query: 624 KAKTSPALVWIATLSTVTTMLSPSTATELKEK*VRSQPRAFPAPSTXQGC--NVCRCTDE 451
+ S A+ W A L P+ V +P P P C NVC
Sbjct: 58 RGHVSSAVTWRALLDFFAARGLPTGDAPAAPVAVHGKPAPPPPPPPVSDCTINVCPKRKF 117
Query: 450 GRHATCTLMRCPQEKEETHAHDQDPGFRCNPGEQFTRDCNDCTCSADGKSVFCTLRLCDQ 271
G + CT CP+ K D P +F +DCT K F + C
Sbjct: 118 GLVSDCTTEICPKRK---FGLVSDFTTEVCPKRKFGL-ASDCTTEVCPKRKFGLVSDCTT 173
Query: 270 DITP 259
++ P
Sbjct: 174 EVCP 177
>01_06_1454 + 37498513-37499154
Length = 213
Score = 28.7 bits (61), Expect = 6.2
Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Frame = +2
Query: 377 GSWSCA-CVSSFSWGHRIKVQVAC 445
GS CA C+S F+ GHR++V C
Sbjct: 141 GSTECAICLSEFAQGHRVRVLPRC 164
>03_01_0526 +
3956909-3957071,3957262-3957317,3957398-3957462,
3957560-3958006,3958102-3958227,3958328-3958511,
3958788-3958943
Length = 398
Score = 28.3 bits (60), Expect = 8.2
Identities = 29/118 (24%), Positives = 52/118 (44%), Gaps = 3/118 (2%)
Frame = -3
Query: 621 AKTSPALVWIATLSTVTTMLSPSTATELKE-K*VRSQPRAFPAPSTXQGCNVCRCTDEGR 445
A+ SP+ + + P+ ++ LKE K P+ FP+PST + NV G
Sbjct: 279 AEKSPSTMKGKKMGLKVEAAKPTRSSVLKEVKATPPTPQRFPSPSTNRVKNV---KAGGM 335
Query: 444 HATCTLMRCPQEKEETHAHDQDPGFRCNPGEQFTRDCNDC-TCSADG-KSVFCTLRLC 277
+ ++ P +++ T + D + +D N+ C A+G S+F L+ C
Sbjct: 336 SMASSPLKKPLKEKGTPSKDLENSKDAKRQPFGVKDMNNTKACDAEGSSSMFWFLKPC 393
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,007,507
Number of Sequences: 37544
Number of extensions: 439352
Number of successful extensions: 1235
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1235
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2373961368
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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