Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_P05
         (851 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18417| Best HMM Match : No HMM Matches (HMM E-Value=.)              37   0.024
SB_25762| Best HMM Match : VWD (HMM E-Value=2.2e-16)                   31   1.6  
SB_38863| Best HMM Match : Fe_hyd_lg_C (HMM E-Value=2.3)               29   3.6  
SB_59246| Best HMM Match : Podocalyxin (HMM E-Value=0.13)              29   4.8  
SB_38771| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.3  
SB_7933| Best HMM Match : GCC2_GCC3 (HMM E-Value=1.4e-18)              29   6.3  
SB_27781| Best HMM Match : Ank (HMM E-Value=0)                         28   8.4  
SB_3457| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.4  

>SB_18417| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 441

 Score = 36.7 bits (81), Expect = 0.024
 Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
 Frame = -3

Query: 474 NVCRCTDEGRHATCTLMRCPQEKEETHAHDQDPGFRC---NPGEQFTRDCNDCTCSADGK 304
           N   CT E +  +C+     Q  E + AH   P   C   N  ++  +DC    CSA GK
Sbjct: 175 NTADCTQECKTGSCSFNCAAQTCESSCAHGSCPNMTCGGTNCTQKCGKDCQQVVCSASGK 234


>SB_25762| Best HMM Match : VWD (HMM E-Value=2.2e-16)
          Length = 705

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
 Frame = -3

Query: 468 CRCTDE--GRHATCTLMRCPQEKEETHAHDQDPGFRCNPGEQFTRDCNDCTCSADGKSVF 295
           C C +E   R      ++C + KE    HD        PG++  +DC  C C  DG+   
Sbjct: 215 CECKEEFVQRVNAVGKVQCIKRKECPCIHDAKI---YKPGDKVYKDCQLCVCK-DGQLTN 270

Query: 294 CTLRLCD 274
           CT + C+
Sbjct: 271 CTGQKCN 277


>SB_38863| Best HMM Match : Fe_hyd_lg_C (HMM E-Value=2.3)
          Length = 284

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 12/39 (30%), Positives = 17/39 (43%)
 Frame = -3

Query: 369 RCNPGEQFTRDCNDCTCSADGKSVFCTLRLCDQDITPHI 253
           +C  GE+    C   T      S FC L  C +D+  H+
Sbjct: 3   KCGIGERTGTGCGSITVKGKTISEFCALSECRRDVATHL 41


>SB_59246| Best HMM Match : Podocalyxin (HMM E-Value=0.13)
          Length = 1027

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
 Frame = -3

Query: 438 TCTLMRCPQEKEETHAHDQD--PGFRCNPGEQFTRDC 334
           TC ++RC  E   T + D+D   GF  N  E    DC
Sbjct: 819 TCEVIRCTDESRSTTSRDKDWSLGFSANTWEDDEDDC 855


>SB_38771| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 267

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -3

Query: 459 TDEGRHATCTLMRCPQEKEETHAHDQD 379
           T+EGRHA C +       + TH H+Q+
Sbjct: 171 TNEGRHAHCNVSIHSDYTQVTHGHEQE 197


>SB_7933| Best HMM Match : GCC2_GCC3 (HMM E-Value=1.4e-18)
          Length = 1023

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 23/85 (27%), Positives = 31/85 (36%), Gaps = 6/85 (7%)
 Frame = -3

Query: 525 VRSQPRAFPAPSTXQGCNVCR----CTDEGRHAT--CTLMRCPQEKEETHAHDQDPGFRC 364
           VR  P  + AP+    C  C     C D    +   CT       + +T       G+RC
Sbjct: 380 VRCSPGEY-APAGQANCTACEAGTYCPDVPLASPYMCTNGTYSNGQRQTSCQTCQAGYRC 438

Query: 363 NPGEQFTRDCNDCTCSADGKSVFCT 289
             G +    C D T S +G    CT
Sbjct: 439 GSGAKSETACGDGTYSKEGSDT-CT 462


>SB_27781| Best HMM Match : Ank (HMM E-Value=0)
          Length = 485

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -2

Query: 430 LDAMPPGEGGDACARPGSRFSLQPRR 353
           L+A PP   GD+C   G +FS++ R+
Sbjct: 417 LNAEPPWSDGDSCHECGMKFSIKNRK 442


>SB_3457| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 848

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 27/94 (28%), Positives = 35/94 (37%), Gaps = 5/94 (5%)
 Frame = -3

Query: 585  LSTVTTMLSPSTATELKEK*VRSQPRAFP--APSTXQGCNVCRCTDEGRHATCTLMRC-- 418
            L+TVT+     +A++ +   V S  +A    AP       V  C D  RHATC    C  
Sbjct: 739  LTTVTSATHMRSASKERVD-VESDTKAMDSNAPKVRNIIVVKTCNDCNRHATCVANECVC 797

Query: 417  -PQEKEETHAHDQDPGFRCNPGEQFTRDCNDCTC 319
             P    + H    D    C P     R    C C
Sbjct: 798  NPGYTGDGHQCQPDTCDSCPPNSHCMRGV--CVC 829


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,710,169
Number of Sequences: 59808
Number of extensions: 492735
Number of successful extensions: 1289
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1285
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2419355818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)