Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_P05
         (851 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g35930.1 68418.m04322 AMP-dependent synthetase and ligase fam...    29   3.0  

>At5g35930.1 68418.m04322 AMP-dependent synthetase and ligase family
           protein similar to iturin A synthetase C [Bacillus
           subtilis] GI:16040972; contains Pfam profile PF00501:
           AMP-binding enzyme
          Length = 1040

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 19/56 (33%), Positives = 24/56 (42%)
 Frame = +2

Query: 308 PSAEQVQSLQSRVNCSPGLQRKPGSWSCACVSSFSWGHRIKVQVACRPSSVQRHTL 475
           PS E V S+ S + C         SW    V S      I + +AC  SSV+ H L
Sbjct: 11  PSVEYVISVFSVLRCGEAFLPLDPSWPRERVLSLISSSNISLVIACGLSSVESHWL 66


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,197,276
Number of Sequences: 28952
Number of extensions: 322857
Number of successful extensions: 813
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 777
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 813
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1980143200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)