Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_P04
         (856 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10518| Best HMM Match : No HMM Matches (HMM E-Value=.)              40   0.003
SB_13648| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.8  

>SB_10518| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 328

 Score = 39.9 bits (89), Expect = 0.003
 Identities = 24/53 (45%), Positives = 32/53 (60%)
 Frame = -3

Query: 698 ACSEQXSRMTAMDNASKNAXXXXXXXXXXXSTGPVKLSSXRELIEIISGAAAL 540
           +CSE  +RMTAMD A+KNA           +     + + REL+EIISGAAA+
Sbjct: 277 SCSEHSARMTAMDAATKNAGEMIDKLTLTYNRTRQAVIT-RELVEIISGAAAV 328


>SB_13648| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 33

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 13/14 (92%), Positives = 14/14 (100%)
 Frame = -2

Query: 624 KLTLTFNRTRQAVI 583
           KLTLT+NRTRQAVI
Sbjct: 6   KLTLTYNRTRQAVI 19


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,441,285
Number of Sequences: 59808
Number of extensions: 336677
Number of successful extensions: 652
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 613
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 650
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2431332827
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)