Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_P04
         (856 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY113454-1|AAM29459.1|  297|Drosophila melanogaster RE35715p pro...    53   6e-07
AE014297-4433|AAN14186.1|  297|Drosophila melanogaster CG7610-PC...    53   6e-07
AE014297-4432|AAF56932.1|  297|Drosophila melanogaster CG7610-PB...    53   6e-07
AE014297-4431|AAN14185.1|  297|Drosophila melanogaster CG7610-PA...    53   6e-07

>AY113454-1|AAM29459.1|  297|Drosophila melanogaster RE35715p
           protein.
          Length = 297

 Score = 52.8 bits (121), Expect = 6e-07
 Identities = 32/54 (59%), Positives = 35/54 (64%)
 Frame = -3

Query: 701 GACSEQXSRMTAMDNASKNAXXXXXXXXXXXSTGPVKLSSXRELIEIISGAAAL 540
           GACSEQ SRMTAMDNASKNA           +     + + RELIEIISGAAAL
Sbjct: 244 GACSEQSSRMTAMDNASKNAGEMIDKLTLTFNRTRQAVIT-RELIEIISGAAAL 296


>AE014297-4433|AAN14186.1|  297|Drosophila melanogaster CG7610-PC,
           isoform C protein.
          Length = 297

 Score = 52.8 bits (121), Expect = 6e-07
 Identities = 32/54 (59%), Positives = 35/54 (64%)
 Frame = -3

Query: 701 GACSEQXSRMTAMDNASKNAXXXXXXXXXXXSTGPVKLSSXRELIEIISGAAAL 540
           GACSEQ SRMTAMDNASKNA           +     + + RELIEIISGAAAL
Sbjct: 244 GACSEQSSRMTAMDNASKNAGEMIDKLTLTFNRTRQAVIT-RELIEIISGAAAL 296


>AE014297-4432|AAF56932.1|  297|Drosophila melanogaster CG7610-PB,
           isoform B protein.
          Length = 297

 Score = 52.8 bits (121), Expect = 6e-07
 Identities = 32/54 (59%), Positives = 35/54 (64%)
 Frame = -3

Query: 701 GACSEQXSRMTAMDNASKNAXXXXXXXXXXXSTGPVKLSSXRELIEIISGAAAL 540
           GACSEQ SRMTAMDNASKNA           +     + + RELIEIISGAAAL
Sbjct: 244 GACSEQSSRMTAMDNASKNAGEMIDKLTLTFNRTRQAVIT-RELIEIISGAAAL 296


>AE014297-4431|AAN14185.1|  297|Drosophila melanogaster CG7610-PA,
           isoform A protein.
          Length = 297

 Score = 52.8 bits (121), Expect = 6e-07
 Identities = 32/54 (59%), Positives = 35/54 (64%)
 Frame = -3

Query: 701 GACSEQXSRMTAMDNASKNAXXXXXXXXXXXSTGPVKLSSXRELIEIISGAAAL 540
           GACSEQ SRMTAMDNASKNA           +     + + RELIEIISGAAAL
Sbjct: 244 GACSEQSSRMTAMDNASKNAGEMIDKLTLTFNRTRQAVIT-RELIEIISGAAAL 296


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,027,431
Number of Sequences: 53049
Number of extensions: 477485
Number of successful extensions: 828
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 794
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 820
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4106450400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)