Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_P04
         (856 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g33040.1 68415.m04052 ATP synthase gamma chain, mitochondrial...    40   0.002
At5g17960.1 68418.m02106 DC1 domain-containing protein contains ...    29   3.0  
At2g42730.1 68415.m05292 F-box family protein contains F-box dom...    28   9.1  
At2g34230.1 68415.m04188 hypothetical protein contains Pfam prof...    28   9.1  

>At2g33040.1 68415.m04052 ATP synthase gamma chain, mitochondrial
           (ATPC) identical to SP|Q96250 ATP synthase gamma chain,
           mitochondrial precursor (EC 3.6.3.14) {Arabidopsis
           thaliana}; contains Pfam profile: PF00231 ATP synthase
          Length = 325

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 24/54 (44%), Positives = 32/54 (59%)
 Frame = -3

Query: 698 ACSEQXSRMTAMDNASKNAXXXXXXXXXXXSTGPVKLSSXRELIEIISGAAALD 537
           ACSE  +RM+AMD++S+NA                + S   ELIEIISGA+AL+
Sbjct: 270 ACSEMGARMSAMDSSSRNA-GEMLDRLTLTYNRTRQASITTELIEIISGASALE 322


>At5g17960.1 68418.m02106 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 599

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -1

Query: 271 WCGYYLK*QGTTATHPHFHIYFRCLLKLVCTIC 173
           WCG Y+    T ++HP   +++RC    +C  C
Sbjct: 130 WCGKYIP---TPSSHPRMTVFYRC---SICNFC 156


>At2g42730.1 68415.m05292 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 737

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 15/53 (28%), Positives = 27/53 (50%)
 Frame = +3

Query: 51  HFISNHHCAHTQVTARSPTYVEASLVSRECCRDGSCPVSASQIVQTNLRRQRK 209
           +F+  H+   T ++ R P   E  +  R C  D +C VS+  + + ++R  RK
Sbjct: 174 NFVGGHNVVGTLIS-RCPVLEELVVEERRCV-DWTCSVSSPSLKRLHIRFDRK 224


>At2g34230.1 68415.m04188 hypothetical protein contains Pfam
           profiles PF04780: Protein of unknown function (DUF629),
           PF04781: Protein of unknown function (DUF627)
          Length = 716

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 16/68 (23%), Positives = 30/68 (44%), Gaps = 3/68 (4%)
 Frame = +3

Query: 51  HFISNHHCAHTQVTARSPTYVEASLVSRECCRDGSCPV---SASQIVQTNLRRQRK*IWK 221
           H +  H   +    +  P YV+  L    CC D   PV    A+ ++   ++ Q++ ++ 
Sbjct: 266 HILDKHVHKYEPEFSDRPKYVDEILADMICCGDWK-PVDIAQAANLINDRIKSQKEFVYV 324

Query: 222 *GWVAVVP 245
            GW +  P
Sbjct: 325 NGWCSDWP 332


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,334,344
Number of Sequences: 28952
Number of extensions: 222069
Number of successful extensions: 472
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 459
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 470
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1989897600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)