Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_P03
         (793 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0219 - 6527267-6527437,6528501-6528671,6528776-6529459           34   0.15 
04_03_0904 + 20717005-20718087                                         33   0.20 
05_06_0052 + 25199253-25199304,25199676-25199949,25200709-25201069     29   3.2  
10_01_0274 - 2901033-2901778,2902475-2902634                           29   4.2  
05_03_0039 - 7621613-7622695                                           29   4.2  
04_04_0078 + 22573413-22573554,22573637-22573959,22574681-225753...    29   4.2  
07_03_1164 + 24451808-24451868,24452690-24452923,24453735-244537...    28   9.8  

>03_02_0219 - 6527267-6527437,6528501-6528671,6528776-6529459
          Length = 341

 Score = 33.9 bits (74), Expect = 0.15
 Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 7/84 (8%)
 Frame = -1

Query: 634 TLTAQCPSMSRS---QFRTPSXYQCPPLTPSR--STSRTQ*KRPCRSQLTSPSTGHTQ-- 476
           T+ A  P+  RS   + R  +    PPL P +  + +    KRP  S  ++ S  H++  
Sbjct: 4   TMLASVPTRPRSHPFRRRRGAAAAAPPLLPDQIAAAAAAAAKRPAESSTSASSCFHSEVI 63

Query: 475 STSRSTCLCTLRSPYRTQLRYRYQ 404
           S + +TC  +L +  R + R RYQ
Sbjct: 64  SATSTTCPTSLAAAQRPEKRPRYQ 87


>04_03_0904 + 20717005-20718087
          Length = 360

 Score = 33.5 bits (73), Expect = 0.20
 Identities = 28/97 (28%), Positives = 32/97 (32%)
 Frame = -1

Query: 781 PVYXXVPXTSKGPCGQTXPPCIFPNQXLPRREARPIPR*KNQCPTPLKYTLTAQCPSMSR 602
           P Y   P  +  P   T  P  +  Q  P       P+ K   PTP  YT T   PS   
Sbjct: 124 PTYKPQPKPTPAPYTPTPTPPTYKPQPKPTPPPTYKPQPK---PTPTPYTPTPTPPSYKP 180

Query: 601 SQFRTPSXYQCPPLTPSRSTSRTQ*KRPCRSQLTSPS 491
               TP+ Y   P  PS          P     T PS
Sbjct: 181 QPKPTPTPYTPTPTPPSYKPQPKPTPTPYTPTPTPPS 217


>05_06_0052 + 25199253-25199304,25199676-25199949,25200709-25201069
          Length = 228

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = +1

Query: 451 TGTCFSMWTGYGLSTGMLTGNGTAFSTGYG 540
           +GTC    T  G+ TGM TG  T   TG G
Sbjct: 99  SGTCKYPATASGVGTGMGTGTSTGTGTGVG 128


>10_01_0274 - 2901033-2901778,2902475-2902634
          Length = 301

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 29/93 (31%), Positives = 34/93 (36%), Gaps = 2/93 (2%)
 Frame = -1

Query: 763 PXTSKGPCGQTXPPC--IFPNQXLPRREARPIPR*KNQCPTPLKYTLTAQCPSMSRSQFR 590
           P T  G  GQ  P C    P    P  E  P P    +C  P       + P  S   + 
Sbjct: 192 PSTPPG-YGQPAPECPPADPGYGQPAPECPPPPTPAPECGQP-----APEYPP-STPAYG 244

Query: 589 TPSXYQCPPLTPSRSTSRTQ*KRPCRSQLTSPS 491
           TP+  +CPP TP   T  T    P      SPS
Sbjct: 245 TPAP-ECPPSTPEYGTPATACPPPTAPGYGSPS 276


>05_03_0039 - 7621613-7622695
          Length = 360

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 12/40 (30%), Positives = 17/40 (42%)
 Frame = -2

Query: 591 VPRQXTSARPLPRREAHPVPSRKGRAVPS*HPRRQAIPSP 472
           VP       P P  + HP P  + +  P  HP+ +  P P
Sbjct: 189 VPHPEPKPEPKPEPKPHPEPKPEPKPEPKLHPKPEPKPHP 228


>04_04_0078 +
           22573413-22573554,22573637-22573959,22574681-22575313,
           22575383-22575838
          Length = 517

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 16/32 (50%), Positives = 20/32 (62%)
 Frame = +2

Query: 596 LASRHGRALGGQRVL*RGRALVFLPGYGTGFS 691
           +ASR  RA+G Q V+  G AL F  G  TGF+
Sbjct: 102 VASRVTRAMGRQAVMVMGGALFFAGGAVTGFA 133


>07_03_1164 +
           24451808-24451868,24452690-24452923,24453735-24453768,
           24454372-24454627
          Length = 194

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = +1

Query: 442 SMCTGTCFSMWTGYGLSTGMLTGNGTAFSTGYG 540
           +M  GT F+  TG G +TG   G GT   TG G
Sbjct: 126 TMTPGT-FTPGTGMGTTTGTGMGTGTTTGTGLG 157


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,372,217
Number of Sequences: 37544
Number of extensions: 304158
Number of successful extensions: 1227
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 871
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1156
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2138915688
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)