Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_T7_P03
(793 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g40040.1 68415.m04920 defective chloroplasts and leaves prote... 34 0.12
At5g53870.1 68418.m06701 plastocyanin-like domain-containing pro... 32 0.38
At5g27870.1 68418.m03343 pectinesterase family protein similar t... 31 1.2
At4g00890.1 68417.m00120 proline-rich family protein contains pr... 31 1.2
At4g35785.2 68417.m05083 transformer serine/arginine-rich ribonu... 30 2.0
At4g12480.1 68417.m01973 protease inhibitor/seed storage/lipid t... 29 2.7
At3g16460.2 68416.m02097 jacalin lectin family protein contains ... 29 2.7
At3g16460.1 68416.m02098 jacalin lectin family protein contains ... 29 2.7
At5g45640.1 68418.m05612 subtilase family protein contains Pfam ... 28 6.2
At2g29210.1 68415.m03550 splicing factor PWI domain-containing p... 28 8.2
At1g25550.1 68414.m03172 myb family transcription factor contain... 28 8.2
>At2g40040.1 68415.m04920 defective chloroplasts and leaves
protein-related / DCL protein-related similar to DCL
protein, chloroplast precursor (Defective chloroplasts
and leaves protein) (Swiss-Prot:Q42463) [Lycopersicon
esculentum]
Length = 839
Score = 33.9 bits (74), Expect = 0.12
Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 3/71 (4%)
Frame = -1
Query: 625 AQCPSMSRSQFRTPSXYQCPPLTPSRSTSRTQ*KRPCRSQLTSPSTGHTQSTSRSTCLC- 449
AQ S S++Q ++ S Q + S+S S++Q + +SQ SPS TQS S++
Sbjct: 768 AQAQSPSQTQSQSQSQSQSQSQSQSQSQSQSQSQSQSQSQSQSPSQTQTQSPSQTQAQAQ 827
Query: 448 --TLRSPYRTQ 422
+ +SP +TQ
Sbjct: 828 SPSSQSPSQTQ 838
>At5g53870.1 68418.m06701 plastocyanin-like domain-containing
protein contains similarity to SP|Q02917 Early nodulin
55-2 precursor {Glycine max}; PF02298: Plastocyanin-like
domain
Length = 370
Score = 32.3 bits (70), Expect = 0.38
Identities = 28/104 (26%), Positives = 45/104 (43%), Gaps = 3/104 (2%)
Frame = -1
Query: 763 PXTSKGPCGQTXPPCIFPNQXLPRREARPIPR*KNQCPTPLKYTLT---AQCPSMSRSQF 593
P S P T P + P+ A P P K+ P+P+ ++ + A PS S +
Sbjct: 181 PPKSSSPISHT--PALSPSHATSHSPATPSPSPKS--PSPVSHSPSHSPAHTPSHSPAHT 236
Query: 592 RTPSXYQCPPLTPSRSTSRTQ*KRPCRSQLTSPSTGHTQSTSRS 461
+ S P +P+ + S + P S SPS H+ +T +S
Sbjct: 237 PSHSPAHAPSHSPAHAPSHSPAHAPSHSPAHSPS--HSPATPKS 278
>At5g27870.1 68418.m03343 pectinesterase family protein similar to
pectinesterase (EC 3.1.1.11) from Salix gilgiana
GI:6714532, Lycopersicon esculentum SP|Q43143, Phaseolus
vulgaris SP|Q43111; contains Pfam profile PF01095
pectinesterase
Length = 732
Score = 30.7 bits (66), Expect = 1.2
Identities = 32/119 (26%), Positives = 40/119 (33%), Gaps = 2/119 (1%)
Frame = -1
Query: 784 TPVYXXVPXTSKGPCGQTXPPCIFPNQXLPRREARPIPR*KNQCPTPLKYTLTAQCPSMS 605
TP P TS P GQ P P+ + + P + TP + P
Sbjct: 610 TPSSVVSPSTSL-PAGQLGAPPATPSMVVSPSTSPPAGHLGSPSDTPSSLVSPSTSPPAG 668
Query: 604 R--SQFRTPSXYQCPPLTPSRSTSRTQ*KRPCRSQLTSPSTGHTQSTSRSTCLCTLRSP 434
S TPS P +PS S S + P SPS + S S S SP
Sbjct: 669 HLGSPSDTPSSVVTPSASPSTSPSASPSVSPSAFPSASPSASPSASPSVSPSASPSASP 727
>At4g00890.1 68417.m00120 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 431
Score = 30.7 bits (66), Expect = 1.2
Identities = 17/53 (32%), Positives = 23/53 (43%)
Frame = -1
Query: 652 PTPLKYTLTAQCPSMSRSQFRTPSXYQCPPLTPSRSTSRTQ*KRPCRSQLTSP 494
P P + PSM + PPL PS+S T+ + P SQ +SP
Sbjct: 175 PPPQEAKTPPSSPSMMLNATEEFESQPKPPLLPSKSIDETRLRSPLMSQASSP 227
>At4g35785.2 68417.m05083 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 141
Score = 29.9 bits (64), Expect = 2.0
Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 4/68 (5%)
Frame = -1
Query: 679 PIPR*KNQCPTPLKYTLTAQCPSMSRSQ----FRTPSXYQCPPLTPSRSTSRTQ*KRPCR 512
P R ++ P+P K ++ S SRS+ R+ S P++PSRS R++ + R
Sbjct: 5 PQRRRDSRSPSPRKERARSRSRSRSRSRSRPRLRSRSRSLPRPVSPSRSRGRSRSRSRGR 64
Query: 511 SQLTSPST 488
S++ +P T
Sbjct: 65 SEVENPGT 72
>At4g12480.1 68417.m01973 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein identical to
pEARLI 1 (Accession No. L43080): an Arabidopsis member
of a conserved gene family (PGF95-099), Plant Physiol.
109 (4), 1497 (1995); contains Pfam protease
inhibitor/seed storage/LTP family domain PF00234
Length = 168
Score = 29.5 bits (63), Expect = 2.7
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -2
Query: 567 RPLPRREAHPVPSRKGRAVPS*HPRRQAIPSP 472
+P+P + PVPS K + VPS ++PSP
Sbjct: 37 KPVPSPKPKPVPSPKPKPVPSPSVPSPSVPSP 68
>At3g16460.2 68416.m02097 jacalin lectin family protein contains
Pfam profile: PF01419 jacalin-like lectin domain;
similar to myrosinase binding protein [Brassica napus]
GI:1711296, GI:1655824, myrosinase-binding protein
homolog [Arabidopsis thaliana] GI:2997767; contains Pfam
profile PF01419 jacalin-like lectin family
Length = 647
Score = 29.5 bits (63), Expect = 2.7
Identities = 15/30 (50%), Positives = 15/30 (50%)
Frame = +1
Query: 451 TGTCFSMWTGYGLSTGMLTGNGTAFSTGYG 540
TGT TG G TG TG GT TG G
Sbjct: 138 TGTGTGTGTGTGTGTGTGTGTGTGTGTGTG 167
>At3g16460.1 68416.m02098 jacalin lectin family protein contains
Pfam profile: PF01419 jacalin-like lectin domain;
similar to myrosinase binding protein [Brassica napus]
GI:1711296, GI:1655824, myrosinase-binding protein
homolog [Arabidopsis thaliana] GI:2997767; contains Pfam
profile PF01419 jacalin-like lectin family
Length = 705
Score = 29.5 bits (63), Expect = 2.7
Identities = 15/30 (50%), Positives = 15/30 (50%)
Frame = +1
Query: 451 TGTCFSMWTGYGLSTGMLTGNGTAFSTGYG 540
TGT TG G TG TG GT TG G
Sbjct: 138 TGTGTGTGTGTGTGTGTGTGTGTGTGTGTG 167
>At5g45640.1 68418.m05612 subtilase family protein contains Pfam
domain, PF00082: Subtilase family; contains Pfam domain,
PF02225: protease associated (PA) domain
Length = 754
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +2
Query: 644 RGRALVFLPGYGTGFSTG*GLVWEYARGXGL 736
RG+ ++ L GYG+G + G GL + A G G+
Sbjct: 397 RGKVVLCLRGYGSGSTIGKGLEVKRAGGVGM 427
>At2g29210.1 68415.m03550 splicing factor PWI domain-containing
protein contains Pfam profile PF01480: PWI domain
Length = 878
Score = 27.9 bits (59), Expect = 8.2
Identities = 15/31 (48%), Positives = 17/31 (54%)
Frame = -2
Query: 564 PLPRREAHPVPSRKGRAVPS*HPRRQAIPSP 472
P PRR P P R +PS PRR +PSP
Sbjct: 463 PPPRRAGLPSPPPAQR-LPSPPPRRAGLPSP 492
>At1g25550.1 68414.m03172 myb family transcription factor contains
Pfam domain, PF00249: Myb-like DNA-binding domain
Length = 344
Score = 27.9 bits (59), Expect = 8.2
Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 2/74 (2%)
Frame = -1
Query: 694 RREARPIPR*KNQCPTPLKYTLTAQC--PSMSRSQFRTPSXYQCPPLTPSRSTSRTQ*KR 521
RR A P+ R + P ++ + PS + R + P P STS + R
Sbjct: 266 RRPATPVVRTGGENPQQRQFMVMEGIWVPSHDTTNNRVYAPVATQP--PQSSTSGERSNR 323
Query: 520 PCRSQLTSPSTGHT 479
C+S TS +T HT
Sbjct: 324 GCKSPATSSTTTHT 337
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,736,147
Number of Sequences: 28952
Number of extensions: 221202
Number of successful extensions: 721
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 589
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 689
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1785055200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -