Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_P01
         (794 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    25   0.61 
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   7.5  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 25.4 bits (53), Expect = 0.61
 Identities = 21/52 (40%), Positives = 25/52 (48%)
 Frame = -2

Query: 703 PVKTDPTLXCTAYKKNRFYLFSKRSPDDVKGPDNDRDIFNEKPSKEDIISAT 548
           P KT P+L  T  K ++  LFSK     VK    D+DI    P KE   S T
Sbjct: 671 PNKTLPSLPSTLTKNSKQGLFSKLFAKKVK---KDKDIILNVP-KESTQSLT 718


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 7/21 (33%), Positives = 11/21 (52%)
 Frame = -2

Query: 211 TLAPTPWLDNKHTVFGRVTRG 149
           T  P PW  + + + GR+  G
Sbjct: 122 TKEPPPWETDSYKLIGRIAAG 142



 Score = 21.4 bits (43), Expect = 10.0
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = -1

Query: 755 GGVXPXKWRAPE 720
           GG  P +W APE
Sbjct: 797 GGKIPVRWTAPE 808


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 128,416
Number of Sequences: 438
Number of extensions: 2435
Number of successful extensions: 5
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25125039
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)