Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_T7_P01
(794 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g44600.1 68416.m04794 peptidyl-prolyl cis-trans isomerase cyc... 268 2e-72
At2g36130.1 68415.m04436 peptidyl-prolyl cis-trans isomerase, pu... 154 6e-38
At1g01940.1 68414.m00112 peptidyl-prolyl cis-trans isomerase cyc... 145 3e-35
At4g33060.1 68417.m04709 peptidyl-prolyl cis-trans isomerase cyc... 121 5e-28
At3g62030.1 68416.m06967 peptidyl-prolyl cis-trans isomerase, ch... 117 1e-26
At3g55920.1 68416.m06214 peptidyl-prolyl cis-trans isomerase, pu... 116 1e-26
At2g29960.1 68415.m03644 peptidyl-prolyl cis-trans isomerase / c... 115 3e-26
At5g67530.1 68418.m08515 peptidyl-prolyl cis-trans isomerase cyc... 115 4e-26
At5g58710.1 68418.m07355 peptidyl-prolyl cis-trans isomerase, pu... 115 4e-26
At5g13120.1 68418.m01503 peptidyl-prolyl cis-trans isomerase cyc... 114 7e-26
At2g15790.1 68415.m01810 peptidyl-prolyl cis-trans isomerase / c... 110 1e-24
At3g63400.2 68416.m07138 peptidyl-prolyl cis-trans isomerase cyc... 104 8e-23
At3g63400.1 68416.m07137 peptidyl-prolyl cis-trans isomerase cyc... 104 8e-23
At4g34870.1 68417.m04946 peptidyl-prolyl cis-trans isomerase / c... 102 2e-22
At3g56070.1 68416.m06231 peptidyl-prolyl cis-trans isomerase, pu... 100 1e-21
At2g21130.1 68415.m02507 peptidyl-prolyl cis-trans isomerase / c... 98 5e-21
At2g16600.1 68415.m01906 peptidyl-prolyl cis-trans isomerase, cy... 98 7e-21
At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein, pu... 97 2e-20
At4g38740.1 68417.m05487 peptidyl-prolyl cis-trans isomerase / c... 95 6e-20
At4g34960.1 68417.m04955 peptidyl-prolyl cis-trans isomerase, pu... 93 1e-19
At2g38730.1 68415.m04756 peptidyl-prolyl cis-trans isomerase, pu... 92 3e-19
At4g32420.1 68417.m04615 peptidyl-prolyl cis-trans isomerase cyc... 72 5e-13
At2g47320.1 68415.m05907 peptidyl-prolyl cis-trans isomerase cyc... 71 7e-13
At3g66654.3 68416.m00779 peptidyl-prolyl cis-trans isomerase cyc... 60 2e-09
At3g66654.2 68416.m00778 peptidyl-prolyl cis-trans isomerase cyc... 60 2e-09
At3g66654.1 68416.m00777 peptidyl-prolyl cis-trans isomerase cyc... 60 2e-09
At1g26940.1 68414.m03284 peptidyl-prolyl cis-trans isomerase cyc... 54 8e-08
At3g22920.1 68416.m02888 peptidyl-prolyl cis-trans isomerase, pu... 45 5e-05
At1g74070.1 68414.m08579 peptidyl-prolyl cis-trans isomerase cyc... 38 0.008
At5g35100.1 68418.m04153 peptidyl-prolyl cis-trans isomerase cyc... 35 0.054
At4g17070.1 68417.m02573 expressed protein 28 8.2
At3g45330.1 68416.m04894 lectin protein kinase family protein co... 28 8.2
>At3g44600.1 68416.m04794 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein similar to SP|P87051
Peptidyl-prolyl cis-trans isomerase cyp2 (EC 5.2.1.8)
(Cyclophilin cyp2) {Schizosaccharomyces pombe}; contains
Pfam profiles PF00160: peptidyl-prolyl cis-trans
isomerase cyclophilin-type, PF00400: WD domain G-beta
repeat
Length = 631
Score = 268 bits (658), Expect = 2e-72
Identities = 116/214 (54%), Positives = 158/214 (73%), Gaps = 2/214 (0%)
Frame = -2
Query: 694 TDPTLXCTAYKKNRFYLFSKRSPDDVKGPDNDRDIFNEKPSKEDIISATE--GQGVQRIY 521
TDPT+ C A+KK+R Y+FS+R P++ + RD+FNEKP+ ++++S ++ +
Sbjct: 416 TDPTILCCAFKKHRIYMFSRREPEEPEDASQGRDVFNEKPAADELMSVSDIGNSATTSLP 475
Query: 520 EQAVIHTTLGDIHVRIFGKDVPKTAENFCVHARNGYYNGHIFHRVIKGFMVQXXXXXXXX 341
E ++HTTLGDIH++++ ++ PKT ENF H RNGYY+ H+FHRVI+GFM+Q
Sbjct: 476 ENVIMHTTLGDIHMKLYPEECPKTVENFTTHCRNGYYDNHLFHRVIRGFMIQTGDPLGDG 535
Query: 340 XXGESIWGGEFADEFRAHLKHDRPYTLSMANAGPDTNGSQFFITLAPTPWLDNKHTVFGR 161
G+SIWG EF DEF L+HDRP+TLSMANAGP+TNGSQFFIT TPWLDNKHTVFGR
Sbjct: 536 TGGQSIWGREFEDEFHKSLRHDRPFTLSMANAGPNTNGSQFFITTVATPWLDNKHTVFGR 595
Query: 160 VTRGMEVVQNIGAAKTNPKTDKPYDDIRILSLSV 59
V +GM+VVQ I KT+ K D+PY D++IL+++V
Sbjct: 596 VVKGMDVVQGIEKVKTD-KNDRPYQDVKILNVTV 628
>At2g36130.1 68415.m04436 peptidyl-prolyl cis-trans isomerase,
putative / cyclophilin, putative / rotamase, putative
contains Pfam domain, PF00160: peptidyl-prolyl cis-trans
isomerase, cyclophilin-type
Length = 164
Score = 154 bits (374), Expect = 6e-38
Identities = 73/153 (47%), Positives = 100/153 (65%)
Frame = -2
Query: 517 QAVIHTTLGDIHVRIFGKDVPKTAENFCVHARNGYYNGHIFHRVIKGFMVQXXXXXXXXX 338
+ + T++G V ++ K P+T NF +R GYY+ +FHR++K F+VQ
Sbjct: 11 EVTLETSMGPFTVEMYYKHSPRTCRNFLELSRRGYYDNVLFHRIVKDFIVQGGDPTGTGR 70
Query: 337 XGESIWGGEFADEFRAHLKHDRPYTLSMANAGPDTNGSQFFITLAPTPWLDNKHTVFGRV 158
GESI+G +F DE LKH LSMANAGP+TNGSQFFITLAP P LD KHT+FGRV
Sbjct: 71 GGESIYGSKFEDEINKELKHTGAGILSMANAGPNTNGSQFFITLAPQPSLDGKHTIFGRV 130
Query: 157 TRGMEVVQNIGAAKTNPKTDKPYDDIRILSLSV 59
RGMEV++ +G+ +T+ TD+P +++IL V
Sbjct: 131 CRGMEVIKRLGSVQTD-NTDRPIHEVKILRTKV 162
>At1g01940.1 68414.m00112 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein contains Pfam domain,
PF00160: peptidyl-prolyl cis-trans isomerase,
cyclophilin-type
Length = 160
Score = 145 bits (352), Expect = 3e-35
Identities = 73/150 (48%), Positives = 96/150 (64%)
Frame = -2
Query: 508 IHTTLGDIHVRIFGKDVPKTAENFCVHARNGYYNGHIFHRVIKGFMVQXXXXXXXXXXGE 329
+HT LGDI IF +VPK+AENF +GYY+G IFHR IKGFM+Q G
Sbjct: 5 LHTNLGDIKCEIFCDEVPKSAENFLALCASGYYDGTIFHRNIKGFMIQGGDPKGTGKGGT 64
Query: 328 SIWGGEFADEFRAHLKHDRPYTLSMANAGPDTNGSQFFITLAPTPWLDNKHTVFGRVTRG 149
SIWG +F DE R LKH+ LSMAN+GP+TNGSQFFIT A P L+ +T+FG+V G
Sbjct: 65 SIWGKKFNDEIRDSLKHNARGMLSMANSGPNTNGSQFFITYAKQPHLNGLYTIFGKVIHG 124
Query: 148 MEVVQNIGAAKTNPKTDKPYDDIRILSLSV 59
EV+ + +T P D+P +IR+ +++
Sbjct: 125 FEVLDIMEKTQTGP-GDRPLAEIRLNRVTI 153
>At4g33060.1 68417.m04709 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein contains Pfam domain,
PF00160: peptidyl-prolyl cis-trans isomerase,
cyclophilin-type
Length = 504
Score = 121 bits (292), Expect = 5e-28
Identities = 66/156 (42%), Positives = 94/156 (60%), Gaps = 3/156 (1%)
Frame = -2
Query: 517 QAVIHTTLGDIHVRIFGKDVPKTAENFCVHARNGYYNGHIFHRVIKGFMVQXXXXXXXXX 338
+ +++TT G I V ++ K+ PK+ NF GY++ IFHRVI GF+VQ
Sbjct: 14 KVIVNTTHGPIDVELWPKEAPKSVRNFVQLCLEGYFDNTIFHRVIPGFLVQGGDPTGSGT 73
Query: 337 XGESIWGGEFADEFRAHLKHDRPYTLSMANA-GPDTNGSQFFITLAPTPWLDNKHTVFGR 161
G+SI+GG FADEF + L+ ++MANA P++NGSQFF TL WLD KHT+FG+
Sbjct: 74 GGDSIYGGVFADEFHSRLRFSHRGIVAMANASSPNSNGSQFFFTLDKCDWLDKKHTIFGK 133
Query: 160 VT-RGMEVVQNIGAAKTNPKTDKPYDDI-RILSLSV 59
VT + + +G T+ K D+P D +ILS+ V
Sbjct: 134 VTGDSIYNLLRLGEVDTS-KDDRPLDPAPKILSVEV 168
>At3g62030.1 68416.m06967 peptidyl-prolyl cis-trans isomerase,
chloroplast / cyclophilin / rotamase / cyclosporin
A-binding protein (ROC4) identical to peptidyl-prolyl
cis-trans isomerase, chloroplast precursor, PPIase
(cyclophilin, cyclosporin A-binding protein)
[Arabidopsis thaliana] SWISS-PROT:P34791; identical to
cDNA nuclear-encoded chloroplast stromal cyclophilin
(ROC4) GI:405130
Length = 260
Score = 117 bits (281), Expect = 1e-26
Identities = 71/172 (41%), Positives = 96/172 (55%), Gaps = 5/172 (2%)
Frame = -2
Query: 574 SKEDIISATEGQGVQRIYEQAVIHTTL-GDIHVRIFGKDVPKTAENF---CVHARNGYYN 407
++E+ + + + ++Y I + G I + +FG+ VPKT ENF C + Y
Sbjct: 81 AEEEEVIEPQAKVTNKVYFDVEIGGEVAGRIVMGLFGEVVPKTVENFRALCTGEKKYGYK 140
Query: 406 GHIFHRVIKGFMVQXXXXXXXXXXGE-SIWGGEFADEFRAHLKHDRPYTLSMANAGPDTN 230
G FHR+IK FM+Q G SI+G +F DE LKH P LSMANAGP+TN
Sbjct: 141 GSSFHRIIKDFMIQGGDFTEGNGTGGISIYGAKFEDE-NFTLKHTGPGILSMANAGPNTN 199
Query: 229 GSQFFITLAPTPWLDNKHTVFGRVTRGMEVVQNIGAAKTNPKTDKPYDDIRI 74
GSQFFI T WLDNKH VFG+V GM++V+ + + +T D P RI
Sbjct: 200 GSQFFICTVKTSWLDNKHVVFGQVIEGMKLVRTLESQETR-AFDVPKKGCRI 250
>At3g55920.1 68416.m06214 peptidyl-prolyl cis-trans isomerase,
putative / cyclophilin, putative / rotamase, putative
similar to cyclophilin [Arabidopsis thaliana]
gi|2443755|gb|AAB71401
Length = 228
Score = 116 bits (280), Expect = 1e-26
Identities = 75/178 (42%), Positives = 97/178 (54%), Gaps = 11/178 (6%)
Frame = -2
Query: 622 DVKGPDNDRDIFNEKPSKEDIISATEGQGVQRIYEQAVIHTTLGDIHVRIFGKDVPKTAE 443
DV P + I + K ++ + EG + ++ + + G I + +FG VPKTAE
Sbjct: 32 DVADPSVNEKILDAKLNQ--VGEDLEGVTHKVYFDIQINGSPAGRILIGLFGNIVPKTAE 89
Query: 442 NF---CVHARNG-------YYNGHIFHRVIKGFMVQXXXXXXXXXXG-ESIWGGEFADEF 296
NF C + Y+ G FHR+I GFM+Q G ESI+G +FADE
Sbjct: 90 NFRSLCTGEKGVGNMGKPLYFKGSSFHRIIPGFMIQGGDFTRGDGRGGESIYGDKFADE- 148
Query: 295 RAHLKHDRPYTLSMANAGPDTNGSQFFITLAPTPWLDNKHTVFGRVTRGMEVVQNIGA 122
LKH P LSMAN+GPD+NGSQFFIT T WLD H VFG+V GMEVV+ I A
Sbjct: 149 NFKLKHTGPGFLSMANSGPDSNGSQFFITTVTTSWLDGHHVVFGKVLSGMEVVRKIEA 206
>At2g29960.1 68415.m03644 peptidyl-prolyl cis-trans isomerase /
cyclophilin (CYP5) / rotamase identical to cyclophilin
[Arabidopsis thaliana] gi|2443755|gb|AAB71401
Length = 201
Score = 115 bits (277), Expect = 3e-26
Identities = 69/144 (47%), Positives = 84/144 (58%), Gaps = 11/144 (7%)
Frame = -2
Query: 493 GDIHVRIFGKDVPKTAENF---CVH----ARNG---YYNGHIFHRVIKGFMVQXXXXXXX 344
G + + +FGK VPKTAENF C ++G +Y G FHR+I FM+Q
Sbjct: 46 GRVVIGLFGKAVPKTAENFRALCTGEKGVGKSGKPLHYKGSKFHRIIPSFMIQGGDFTHG 105
Query: 343 XXXG-ESIWGGEFADEFRAHLKHDRPYTLSMANAGPDTNGSQFFITLAPTPWLDNKHTVF 167
G ESI+G +FADE LKH P LSMAN+G DTNGSQFFIT T WLD +H VF
Sbjct: 106 NGMGGESIYGQKFADE-NFKLKHTGPGVLSMANSGEDTNGSQFFITTVTTSWLDGRHVVF 164
Query: 166 GRVTRGMEVVQNIGAAKTNPKTDK 95
G+V +GM+VV I A T K
Sbjct: 165 GKVVQGMDVVYKIEAEGKQSGTPK 188
>At5g67530.1 68418.m08515 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein contains Pfam domain,
PF00160: peptidyl-prolyl cis-trans isomerase,
cyclophilin-type
Length = 595
Score = 115 bits (276), Expect = 4e-26
Identities = 59/148 (39%), Positives = 82/148 (55%)
Frame = -2
Query: 502 TTLGDIHVRIFGKDVPKTAENFCVHARNGYYNGHIFHRVIKGFMVQXXXXXXXXXXGESI 323
TT GD+++ + P+ ENF GYYNG FHR I+ FM+Q GESI
Sbjct: 350 TTHGDLNIELHCDIAPRACENFITLCERGYYNGVAFHRSIRNFMIQGGDPTGTGKGGESI 409
Query: 322 WGGEFADEFRAHLKHDRPYTLSMANAGPDTNGSQFFITLAPTPWLDNKHTVFGRVTRGME 143
WG F DE + L H +SMAN+GP TNGSQFF+ L+ KHTVFG V G+
Sbjct: 410 WGKPFKDEPNSKLLHSGRGVVSMANSGPHTNGSQFFVLYKSATHLNYKHTVFGGVVGGLA 469
Query: 142 VVQNIGAAKTNPKTDKPYDDIRILSLSV 59
+ + + ++D+P ++I+I+ SV
Sbjct: 470 TLAAMENVPVD-ESDRPLEEIKIIEASV 496
>At5g58710.1 68418.m07355 peptidyl-prolyl cis-trans isomerase,
putative / cyclophilin, putative / rotamase, putative
(ROC7) similar to cyclophilin [Arabidopsis thaliana]
gi|2443755|gb|AAB71401
Length = 204
Score = 115 bits (276), Expect = 4e-26
Identities = 70/144 (48%), Positives = 82/144 (56%), Gaps = 11/144 (7%)
Frame = -2
Query: 493 GDIHVRIFGKDVPKTAENF---CVH----ARNG---YYNGHIFHRVIKGFMVQXXXXXXX 344
G I + +FGK VPKT ENF C +NG +Y G FHR+I FM+Q
Sbjct: 49 GRIVMGLFGKTVPKTVENFRALCTGEKGIGKNGKALHYKGSSFHRIIPSFMLQGGDFTHG 108
Query: 343 XXXG-ESIWGGEFADEFRAHLKHDRPYTLSMANAGPDTNGSQFFITLAPTPWLDNKHTVF 167
G ESI+G +FADE LKH P LSMANAG DTNGSQFFIT T WLD +H VF
Sbjct: 109 NGMGGESIYGEKFADE-NFKLKHTGPGFLSMANAGQDTNGSQFFITTVTTSWLDGRHVVF 167
Query: 166 GRVTRGMEVVQNIGAAKTNPKTDK 95
G+V GM+VV + A T K
Sbjct: 168 GKVVTGMDVVYKVEAEGNQSGTPK 191
>At5g13120.1 68418.m01503 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein contains Pfam domain,
PF00160: peptidyl-prolyl cis-trans isomerase,
cyclophilin-type
Length = 259
Score = 114 bits (274), Expect = 7e-26
Identities = 67/169 (39%), Positives = 94/169 (55%), Gaps = 8/169 (4%)
Frame = -2
Query: 574 SKEDIISATEGQGVQRIYEQAVIHTTLGDIHVRI----FGKDVPKTAENF---CVHARNG 416
S ++++ + + ++Y + +G + RI +G DVP+T ENF C +
Sbjct: 76 SNAEVVTEPQSKITHKVYFDISVGNPVGKLAGRIVIGLYGDDVPQTVENFRALCTGEKGF 135
Query: 415 YYNGHIFHRVIKGFMVQXXXXXXXXXXG-ESIWGGEFADEFRAHLKHDRPYTLSMANAGP 239
Y G FHRVI+ FM+Q G +S++G F DE L H P LSMANAGP
Sbjct: 136 GYKGSTFHRVIRDFMIQGGDFEKGNGTGGKSVYGRTFKDE-NFKLSHVGPGVLSMANAGP 194
Query: 238 DTNGSQFFITLAPTPWLDNKHTVFGRVTRGMEVVQNIGAAKTNPKTDKP 92
+TNGSQFFI T WLD +H VFG+V GMEVV+ I +T+ + D+P
Sbjct: 195 NTNGSQFFICTIKTSWLDGRHVVFGQVIEGMEVVKLIEEQETD-RGDRP 242
>At2g15790.1 68415.m01810 peptidyl-prolyl cis-trans isomerase /
cyclophilin-40 (CYP40) / rotamase identical to
cyclophilin-40 [Arabidopsis thaliana] GI:13442983;
supporting cDNA gi|13442982|gb|AY026065.1|
Length = 361
Score = 110 bits (264), Expect = 1e-24
Identities = 68/134 (50%), Positives = 83/134 (61%), Gaps = 12/134 (8%)
Frame = -2
Query: 493 GDIHVRIFGKDVPKTAENF---CVHARN-----G---YYNGHIFHRVIKGFMVQXXXXXX 347
G I + ++ VPKTAENF C + G +Y G+ FHRVIKGFM+Q
Sbjct: 18 GRIVIELYDDVVPKTAENFRLLCTGEKGLGPNTGVPLHYKGNRFHRVIKGFMIQGGDISA 77
Query: 346 XXXXG-ESIWGGEFADEFRAHLKHDRPYTLSMANAGPDTNGSQFFITLAPTPWLDNKHTV 170
G ESI+G +F DE LKH+R LSMAN+GP+TNGSQFFIT T LD KH V
Sbjct: 78 NDGTGGESIYGLKFDDE-NFELKHERKGMLSMANSGPNTNGSQFFITTTRTSHLDGKHVV 136
Query: 169 FGRVTRGMEVVQNI 128
FGRVT+GM VV++I
Sbjct: 137 FGRVTKGMGVVRSI 150
>At3g63400.2 68416.m07138 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein similar to cyclophylin
[Digitalis lanata] GI:1563719; contains Pfam profile
PF00160: peptidyl-prolyl cis-trans isomerase,
cyclophilin-type; contains AT-donor splice site at
intron 9
Length = 387
Score = 104 bits (249), Expect = 8e-23
Identities = 67/151 (44%), Positives = 83/151 (54%), Gaps = 12/151 (7%)
Frame = -2
Query: 487 IHVRIFGKDVPKTAENF---C-----VHARNG---YYNGHIFHRVIKGFMVQXXXXXXXX 341
I + +F VPKTAENF C V G ++ G FHRVIKGFM Q
Sbjct: 23 IVIELFADVVPKTAENFRALCTGEAGVGKSTGKPLHFKGSSFHRVIKGFMAQGGDFSNGN 82
Query: 340 XXG-ESIWGGEFADEFRAHLKHDRPYTLSMANAGPDTNGSQFFITLAPTPWLDNKHTVFG 164
G ESI+GG+F+DE L HD LSMAN GP+TNGSQFFI P LD KH VFG
Sbjct: 83 GTGGESIYGGKFSDE-NFRLDHDGAGVLSMANCGPNTNGSQFFILFKRQPHLDGKHVVFG 141
Query: 163 RVTRGMEVVQNIGAAKTNPKTDKPYDDIRIL 71
+V GM V++ + T+ KP ++I+
Sbjct: 142 KVVEGMAVIKKMELVGTS--DGKPTSPVKII 170
>At3g63400.1 68416.m07137 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein similar to cyclophylin
[Digitalis lanata] GI:1563719; contains Pfam profile
PF00160: peptidyl-prolyl cis-trans isomerase,
cyclophilin-type; contains AT-donor splice site at
intron 9
Length = 570
Score = 104 bits (249), Expect = 8e-23
Identities = 67/151 (44%), Positives = 83/151 (54%), Gaps = 12/151 (7%)
Frame = -2
Query: 487 IHVRIFGKDVPKTAENF---C-----VHARNG---YYNGHIFHRVIKGFMVQXXXXXXXX 341
I + +F VPKTAENF C V G ++ G FHRVIKGFM Q
Sbjct: 23 IVIELFADVVPKTAENFRALCTGEAGVGKSTGKPLHFKGSSFHRVIKGFMAQGGDFSNGN 82
Query: 340 XXG-ESIWGGEFADEFRAHLKHDRPYTLSMANAGPDTNGSQFFITLAPTPWLDNKHTVFG 164
G ESI+GG+F+DE L HD LSMAN GP+TNGSQFFI P LD KH VFG
Sbjct: 83 GTGGESIYGGKFSDE-NFRLDHDGAGVLSMANCGPNTNGSQFFILFKRQPHLDGKHVVFG 141
Query: 163 RVTRGMEVVQNIGAAKTNPKTDKPYDDIRIL 71
+V GM V++ + T+ KP ++I+
Sbjct: 142 KVVEGMAVIKKMELVGTS--DGKPTSPVKII 170
>At4g34870.1 68417.m04946 peptidyl-prolyl cis-trans isomerase /
cyclophilin (CYP1) / rotamase identical to cyclophilin
(CYP1) gi|992643|gb|AAA75512; similar to peptidyl-prolyl
cis-trans isomerase, PPIase (cyclophilin, cyclosporin
A-binding protein) [Catharanthus roseus]
SWISS-PROT:Q39613
Length = 172
Score = 102 bits (245), Expect = 2e-22
Identities = 61/143 (42%), Positives = 80/143 (55%), Gaps = 11/143 (7%)
Frame = -2
Query: 523 YEQAVIHTTLGDIHVRIFGKDVPKTAENF---CVHARNG-------YYNGHIFHRVIKGF 374
++ ++ T +G I + +F P TAENF C + ++ G IFHRVI GF
Sbjct: 8 FDMSLSGTPIGRIEMELFADTTPNTAENFRALCTGEKGMGKLGKPLHFKGSIFHRVIPGF 67
Query: 373 MVQXXXXXXXXXXG-ESIWGGEFADEFRAHLKHDRPYTLSMANAGPDTNGSQFFITLAPT 197
M Q G ESI+G +F DE KH LSMAN+GP+TNGSQFFI T
Sbjct: 68 MCQGGDFTAKNGTGGESIYGAKFKDE-NFIKKHTGAGILSMANSGPNTNGSQFFICTDKT 126
Query: 196 PWLDNKHTVFGRVTRGMEVVQNI 128
WLD KH VFG+V +G++VV+ I
Sbjct: 127 SWLDGKHVVFGQVVKGLDVVKAI 149
>At3g56070.1 68416.m06231 peptidyl-prolyl cis-trans isomerase,
putative / cyclophilin, putative / rotamase, putative
similar to peptidyl-prolyl cis-trans isomerase, PPIase
(cyclophilin, cyclosporin A-binding protein)
[Catharanthus roseus] SWISS-PROT:Q39613
Length = 176
Score = 100 bits (240), Expect = 1e-21
Identities = 63/144 (43%), Positives = 78/144 (54%), Gaps = 15/144 (10%)
Frame = -2
Query: 493 GDIHVRIFGKDVPKTAENF---CVHARNG--------YYNGHIFHRVIKGFMVQXXXXXX 347
G + + +F P+TA NF C NG +Y G FHR+I GFM Q
Sbjct: 18 GRVVMELFADVTPRTANNFRALCT-GENGIGKAGKALHYKGSAFHRIIPGFMCQGGDFTR 76
Query: 346 XXXXG-ESIWGGEFADEFRAHLKHDRPYTLSMANAGPDTNGSQFFITLAPTPWLDNKHTV 170
G ESI+G +F DE LKH P LSMAN+GP+TNGSQFFI T WLD KH V
Sbjct: 77 GNGTGGESIYGSKFEDE-NFKLKHTGPGILSMANSGPNTNGSQFFICTEKTSWLDGKHVV 135
Query: 169 FGRVTRGMEVV---QNIGAAKTNP 107
FG+V G VV +++G+ NP
Sbjct: 136 FGKVVDGYNVVKAMEDVGSDMGNP 159
>At2g21130.1 68415.m02507 peptidyl-prolyl cis-trans isomerase /
cyclophilin (CYP2) / rotamase identical to cyclophilin
[Arabidopsis thaliana] gi|2443757|gb|AAB71402; similar
to peptidyl-prolyl cis-trans isomerase, PPIase
(cyclophilin, cyclosporin A-binding protein)
[Arabidopsis thaliana] SWISS-PROT:P34790
Length = 174
Score = 98.3 bits (234), Expect = 5e-21
Identities = 63/143 (44%), Positives = 78/143 (54%), Gaps = 14/143 (9%)
Frame = -2
Query: 493 GDIHVRIFGKDVPKTAENF---CVH----ARNG---YYNGHIFHRVIKGFMVQXXXXXXX 344
G I + ++ PKTAENF C R+G ++ G FHRVI FM Q
Sbjct: 19 GKIVMELYTDKTPKTAENFRALCTGEKGVGRSGKPLHFKGSSFHRVIPNFMCQGGDFTKG 78
Query: 343 XXXG-ESIWGGEFADEFRAHLKHDRPYTLSMANAGPDTNGSQFFITLAPTPWLDNKHTVF 167
G ESI+G +F DE KH P LSMANAG +TNGSQFFI T WLD KH VF
Sbjct: 79 NGTGGESIYGAKFEDE-NFERKHTGPGILSMANAGANTNGSQFFICTVKTDWLDGKHVVF 137
Query: 166 GRVTRGMEVV---QNIGAAKTNP 107
G+V G++VV + IG++ P
Sbjct: 138 GQVVEGLDVVKAIEKIGSSSGKP 160
>At2g16600.1 68415.m01906 peptidyl-prolyl cis-trans isomerase,
cytosolic / cyclophilin / rotamase (ROC3) identical to
cytosolic cyclophilin [Arabidopsis thaliana] GI:1305455
Length = 173
Score = 97.9 bits (233), Expect = 7e-21
Identities = 65/156 (41%), Positives = 82/156 (52%), Gaps = 12/156 (7%)
Frame = -2
Query: 523 YEQAVIHTTLGDIHVRIFGKDVPKTAENF---CVHARN----G---YYNGHIFHRVIKGF 374
++ V + G I + ++ P+TAENF C R G +Y G FHRVI F
Sbjct: 9 FDMTVGGKSAGRIVMELYADTTPETAENFRALCTGERGIGKQGKPLHYKGSSFHRVIPKF 68
Query: 373 MVQXXXXXXXXXXG-ESIWGGEFADEFRAHLKHDRPYTLSMANAGPDTNGSQFFITLAPT 197
M Q G ESI+G +F DE KH P LSMANAG +TNGSQFFI T
Sbjct: 69 MCQGGDFTAGNGTGGESIYGSKFKDE-NFIKKHTGPGILSMANAGANTNGSQFFICTEKT 127
Query: 196 PWLDNKHTVFGRVTRGMEVVQNI-GAAKTNPKTDKP 92
WLD KH VFG+V G+ VV++I + +T KP
Sbjct: 128 SWLDGKHVVFGQVVEGLNVVRDIEKVGSDSGRTSKP 163
>At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein,
putative
Length = 506
Score = 96.7 bits (230), Expect = 2e-20
Identities = 58/154 (37%), Positives = 83/154 (53%), Gaps = 8/154 (5%)
Frame = -2
Query: 511 VIHTTLGDIHVRIFGKDVPKTAENFCVHARNGYYNGHIFHRVIKGFMVQXXXXXXXXXXG 332
+I T+LGDI + + P T +NF + YYNG +FH V K F Q G
Sbjct: 4 LIVTSLGDIVIDLHSDKCPLTCKNFLKLCKIKYYNGCLFHTVQKDFTAQTGDPTGTGAGG 63
Query: 331 ESIWG---GE----FADEFRAHLKHDRPYTLSMANAGPDTNGSQFFITLA-PTPWLDNKH 176
+SI+ GE + DE LKH + T++MA+ G + N SQF+ TL +LD KH
Sbjct: 64 DSIYKFLYGEQARFYKDEIHLDLKHSKTGTVAMASGGENLNASQFYFTLRDDLDYLDGKH 123
Query: 175 TVFGRVTRGMEVVQNIGAAKTNPKTDKPYDDIRI 74
TVFG++ G + + I A +PK ++PY +IRI
Sbjct: 124 TVFGQIAEGFDTLTRINEAYVDPK-NRPYKNIRI 156
>At4g38740.1 68417.m05487 peptidyl-prolyl cis-trans isomerase /
cyclophilin / rotamase / cyclosporin A-binding protein
(ROC1) identical to SP|P34790 Peptidyl-prolyl cis-trans
isomerase (EC 5.2.1.8) (PPIase) (Rotamase) (Cyclophilin)
(Cyclosporin A-binding protein) {Arabidopsis thaliana}
Length = 172
Score = 94.7 bits (225), Expect = 6e-20
Identities = 61/145 (42%), Positives = 76/145 (52%), Gaps = 11/145 (7%)
Frame = -2
Query: 493 GDIHVRIFGKDVPKTAENF---CVHARNG-------YYNGHIFHRVIKGFMVQXXXXXXX 344
G I + ++ P+TAENF C + ++ G FHRVI FM Q
Sbjct: 18 GRIVMELYTDKTPRTAENFRALCTGEKGVGGTGKPLHFKGSKFHRVIPNFMCQGGDFTAG 77
Query: 343 XXXG-ESIWGGEFADEFRAHLKHDRPYTLSMANAGPDTNGSQFFITLAPTPWLDNKHTVF 167
G ESI+G +F DE KH P LSMANAG +TNGSQFFI T WLD KH VF
Sbjct: 78 NGTGGESIYGSKFEDE-NFERKHTGPGILSMANAGANTNGSQFFICTVKTDWLDGKHVVF 136
Query: 166 GRVTRGMEVVQNIGAAKTNPKTDKP 92
G+V G++VV+ I K + KP
Sbjct: 137 GQVVEGLDVVKAI--EKVGSSSGKP 159
>At4g34960.1 68417.m04955 peptidyl-prolyl cis-trans isomerase,
putative / cyclophilin, putative / rotamase, putative
similar to cyclophilin [Arabidopsis thaliana]
gi|2443755|gb|AAB71401
Length = 224
Score = 93.5 bits (222), Expect = 1e-19
Identities = 56/140 (40%), Positives = 76/140 (54%), Gaps = 12/140 (8%)
Frame = -2
Query: 496 LGDIHVRIFGKDVPKTAENF---CVHARNG-------YYNGHIFHRVIKGFMVQXXXXXX 347
LG I + ++G VPKT ENF C + +Y G FHR+I GF++Q
Sbjct: 60 LGRIVIGLYGTVVPKTVENFRALCTGEKGKTSSGKPLHYKGTPFHRIISGFVIQGGDIIH 119
Query: 346 XXXXG-ESIWGGEFADEFRAHLKHDRPYTLSMANAGPDTNGSQFFITLAPTPWLDNKHTV 170
+SI+GG F DE ++H ++MAN GPD+NGSQFFIT WL+ +H V
Sbjct: 120 GDGKSSDSIYGGTFPDE-NFKIQHSHAGMVAMANTGPDSNGSQFFITTVKASWLEGEHVV 178
Query: 169 FGRVTRGMEVVQNI-GAAKT 113
G+V +GM+ V I G A T
Sbjct: 179 LGKVIQGMDNVFAIEGGAGT 198
>At2g38730.1 68415.m04756 peptidyl-prolyl cis-trans isomerase,
putative / cyclophilin, putative / rotamase, putative
similar to cyclophilin [Homo sapiens]
gi|3647230|gb|AAC60793
Length = 199
Score = 92.3 bits (219), Expect = 3e-19
Identities = 66/140 (47%), Positives = 77/140 (55%), Gaps = 11/140 (7%)
Frame = -2
Query: 493 GDIHVRIFGKDVPKTAENF---CVHA--RNGYYNGHI---FHRVIKGFMVQXXXXXXXXX 338
G I + +F PKTAENF C + G G+ FHRVIK FMVQ
Sbjct: 46 GRIKMELFADIAPKTAENFRQFCTGELRKAGKPLGYKECQFHRVIKDFMVQSGDFLKNDG 105
Query: 337 XG-ESIWGGEFADE-FRAHLKHDRPYTLSMANAGPDTNGSQFFITLAPTPWLDNKHTVFG 164
G SI+G +F DE F A KH P LSMAN+GP+TNG QFFIT A WLDNKH VFG
Sbjct: 106 SGCMSIYGHKFEDENFTA--KHTGPGLLSMANSGPNTNGCQFFITCAKCDWLDNKHVVFG 163
Query: 163 RVT-RGMEVVQNIGAAKTNP 107
RV G+ V++ I P
Sbjct: 164 RVLGDGLLVMRKIENVAIGP 183
>At4g32420.1 68417.m04615 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein weak similarity to
CARS-Cyp [Homo sapiens] GI:1117968; contains Pfam
profile PF00160: peptidyl-prolyl cis-trans isomerase,
cyclophilin-type
Length = 837
Score = 71.7 bits (168), Expect = 5e-13
Identities = 49/147 (33%), Positives = 74/147 (50%), Gaps = 12/147 (8%)
Frame = -2
Query: 475 IFGKDVPKTAENF---C-----VHARNG---YYNGHIFHRVIKGFMVQXXXXXXXXXXG- 332
+F + PKT+ENF C + R+G +Y G FHR++KG Q
Sbjct: 27 LFPEVAPKTSENFRALCTGEKGIGPRSGKPLHYKGSFFHRIMKGSSAQAGDFVNRNGTAG 86
Query: 331 ESIWGGEFADEFRAHLKHDRPYTLSMANAGPDTNGSQFFITLAPTPWLDNKHTVFGRVTR 152
ESI+ G+F DE L+H+ LSM+ A D GS F IT P LD + VFG++ +
Sbjct: 87 ESIYAGKFPDE-SPKLRHEETGLLSMSIADRDKFGSHFHITFRPNQQLDRNNVVFGKLIQ 145
Query: 151 GMEVVQNIGAAKTNPKTDKPYDDIRIL 71
G E+++ I + + KP ++I+
Sbjct: 146 GKEILKKI--ERVGDEEGKPTVSVKII 170
>At2g47320.1 68415.m05907 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein contains Pfam domain,
PF00160: peptidyl-prolyl cis-trans isomerase,
cyclophilin-type
Length = 230
Score = 71.3 bits (167), Expect = 7e-13
Identities = 43/152 (28%), Positives = 74/152 (48%)
Frame = -2
Query: 514 AVIHTTLGDIHVRIFGKDVPKTAENFCVHARNGYYNGHIFHRVIKGFMVQXXXXXXXXXX 335
A + T G + + +F P + F ++GY+ G +F RV+K F++Q
Sbjct: 80 ATLDTGKGSVTIELFKDTAPNVVDQFMKFCQDGYFKGFLFSRVVKHFVIQAGDSAEFDAV 139
Query: 334 GESIWGGEFADEFRAHLKHDRPYTLSMANAGPDTNGSQFFITLAPTPWLDNKHTVFGRVT 155
+ W + LKH+ + + A + G +FFI A L+ K TVFGRV+
Sbjct: 140 KD--WALD-RKNIDTSLKHEE-FMVGTPKAKNEQGGFEFFIVSAQIKDLNEKLTVFGRVS 195
Query: 154 RGMEVVQNIGAAKTNPKTDKPYDDIRILSLSV 59
+G +VVQ I +T+ + +P I I+S+++
Sbjct: 196 KGQDVVQEIEEVETDDQY-QPKSPIEIMSVTL 226
>At3g66654.3 68416.m00779 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein contains Pfam domain,
PF00160: peptidyl-prolyl cis-trans isomerase,
cyclophilin-type
Length = 236
Score = 59.7 bits (138), Expect = 2e-09
Identities = 45/153 (29%), Positives = 70/153 (45%)
Frame = -2
Query: 568 EDIISATEGQGVQRIYEQAVIHTTLGDIHVRIFGKDVPKTAENFCVHARNGYYNGHIFHR 389
ED +A+ GQ + A I+T+ G I V +F + P+ + F + ++ G F R
Sbjct: 66 EDTNTAS-GQKTYDLPGFADINTSKGLITVELFKEGSPEVVDKFLDLCQKDHFKGMPFQR 124
Query: 388 VIKGFMVQXXXXXXXXXXGESIWGGEFADEFRAHLKHDRPYTLSMANAGPDTNGSQFFIT 209
VIK ++VQ E G+ KH+ + N G + + IT
Sbjct: 125 VIKNYLVQAGHSPSSIPVEEWTAKGKLRGRLHIGPKHEAFMLGTPKNKG-NNKDFELLIT 183
Query: 208 LAPTPWLDNKHTVFGRVTRGMEVVQNIGAAKTN 110
AP P L+++ VFGRV +G +VVQ I T+
Sbjct: 184 TAPIPDLNDQLIVFGRVLKGEDVVQEIEEVDTD 216
>At3g66654.2 68416.m00778 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein contains Pfam domain,
PF00160: peptidyl-prolyl cis-trans isomerase,
cyclophilin-type
Length = 236
Score = 59.7 bits (138), Expect = 2e-09
Identities = 45/153 (29%), Positives = 70/153 (45%)
Frame = -2
Query: 568 EDIISATEGQGVQRIYEQAVIHTTLGDIHVRIFGKDVPKTAENFCVHARNGYYNGHIFHR 389
ED +A+ GQ + A I+T+ G I V +F + P+ + F + ++ G F R
Sbjct: 66 EDTNTAS-GQKTYDLPGFADINTSKGLITVELFKEGSPEVVDKFLDLCQKDHFKGMPFQR 124
Query: 388 VIKGFMVQXXXXXXXXXXGESIWGGEFADEFRAHLKHDRPYTLSMANAGPDTNGSQFFIT 209
VIK ++VQ E G+ KH+ + N G + + IT
Sbjct: 125 VIKNYLVQAGHSPSSIPVEEWTAKGKLRGRLHIGPKHEAFMLGTPKNKG-NNKDFELLIT 183
Query: 208 LAPTPWLDNKHTVFGRVTRGMEVVQNIGAAKTN 110
AP P L+++ VFGRV +G +VVQ I T+
Sbjct: 184 TAPIPDLNDQLIVFGRVLKGEDVVQEIEEVDTD 216
>At3g66654.1 68416.m00777 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein contains Pfam domain,
PF00160: peptidyl-prolyl cis-trans isomerase,
cyclophilin-type
Length = 236
Score = 59.7 bits (138), Expect = 2e-09
Identities = 45/153 (29%), Positives = 70/153 (45%)
Frame = -2
Query: 568 EDIISATEGQGVQRIYEQAVIHTTLGDIHVRIFGKDVPKTAENFCVHARNGYYNGHIFHR 389
ED +A+ GQ + A I+T+ G I V +F + P+ + F + ++ G F R
Sbjct: 66 EDTNTAS-GQKTYDLPGFADINTSKGLITVELFKEGSPEVVDKFLDLCQKDHFKGMPFQR 124
Query: 388 VIKGFMVQXXXXXXXXXXGESIWGGEFADEFRAHLKHDRPYTLSMANAGPDTNGSQFFIT 209
VIK ++VQ E G+ KH+ + N G + + IT
Sbjct: 125 VIKNYLVQAGHSPSSIPVEEWTAKGKLRGRLHIGPKHEAFMLGTPKNKG-NNKDFELLIT 183
Query: 208 LAPTPWLDNKHTVFGRVTRGMEVVQNIGAAKTN 110
AP P L+++ VFGRV +G +VVQ I T+
Sbjct: 184 TAPIPDLNDQLIVFGRVLKGEDVVQEIEEVDTD 216
>At1g26940.1 68414.m03284 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein contains Pfam domain,
PF00160: peptidyl-prolyl cis-trans isomerase,
cyclophilin-type
Length = 226
Score = 54.4 bits (125), Expect = 8e-08
Identities = 44/141 (31%), Positives = 65/141 (46%), Gaps = 6/141 (4%)
Frame = -2
Query: 517 QAVIHTTLGDIHVRIFGKDVPKTAENFCVHARNGYYNGHIFHRVIKGFMVQXXXXXXXXX 338
+ V T+ GDI + PKT ++ R G YN + F RV KGF+ Q
Sbjct: 33 RVVFQTSYGDIEFGFYPTVAPKTVDHIFKLVRLGGYNTNHFFRVDKGFVAQVADVASGRS 92
Query: 337 XGESIWGGEFAD-----EFRAHLKHDRPYTLSMAN-AGPDTNGSQFFITLAPTPWLDNKH 176
+ + A+ EF + +KH R TLSM P++ S F + L P LD ++
Sbjct: 93 APMNEEQRKEAEKKIVGEF-SDVKHVRG-TLSMGRYDDPNSAQSSFSMLLGNAPHLDRQY 150
Query: 175 TVFGRVTRGMEVVQNIGAAKT 113
VFG+VT+G E + + T
Sbjct: 151 AVFGKVTKGDETLSKLEEVPT 171
>At3g22920.1 68416.m02888 peptidyl-prolyl cis-trans isomerase,
putative / cyclophilin, putative / rotamase, putative
similar to peptidyl-prolyl cis-trans isomerase PPIase
(cyclophilin, cyclosporin A-binding protein) [Tomato]
SWISS-PROT:P21568
Length = 232
Score = 45.2 bits (102), Expect = 5e-05
Identities = 41/133 (30%), Positives = 58/133 (43%), Gaps = 11/133 (8%)
Frame = -2
Query: 493 GDIHVRIFGKDVPKTAENF---CVHARN----G---YYNGHIFHRVIKGFMVQXXXXXXX 344
G I + +F P+TAENF C R G +Y G F ++ M
Sbjct: 18 GRIVIELFADLTPRTAENFRGLCTGERGIGKCGKPIHYKGSTFDHIVPDLM---WCGGDI 74
Query: 343 XXXGESIWGGEFADEFRAHLKHDRPYTLSMANAGPDTNGSQFFITLAPTPW-LDNKHTVF 167
E I E DE+ D P +SMA D+NGSQF I + +D H V
Sbjct: 75 IFENEPIHSEELDDEYFILNHEDGPGIISMA----DSNGSQFQIHMKDYGLQVDGDHVVI 130
Query: 166 GRVTRGMEVVQNI 128
G+V G+++++NI
Sbjct: 131 GKVVEGLDLMRNI 143
>At1g74070.1 68414.m08579 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein contains Pfam domain,
PF00160: peptidyl-prolyl cis-trans isomerase,
cyclophilin-type
Length = 317
Score = 37.9 bits (84), Expect = 0.008
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = -2
Query: 232 NGSQFFITLAPTPWLDNKHTVFGRVTRGMEVVQNIGAAKT-NPKTDKPY 89
NG++F IT +P L++ V G+V GM VV+ + KT T PY
Sbjct: 230 NGTEFVITAVDSPELEDSVLVIGKVLEGMGVVEKMREVKTVRDNTSSPY 278
>At5g35100.1 68418.m04153 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein contains Pfam domain,
PF00160: peptidyl-prolyl cis-trans isomerase,
cyclophilin-type
Length = 290
Score = 35.1 bits (77), Expect = 0.054
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Frame = -2
Query: 241 PDTNGSQFFITLAP--TPWLDNKHTVFGRVTRGMEVVQNIGAAKT 113
PD +F IT P +P LD + VFG V G++VV +I + T
Sbjct: 190 PDYRNVEFLITTGPGPSPQLDGGNIVFGTVLEGLDVVTSISSIPT 234
>At4g17070.1 68417.m02573 expressed protein
Length = 240
Score = 27.9 bits (59), Expect = 8.2
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = -2
Query: 265 TLSMANAGPDTNGSQFFITLAPTPWLDNKHTVFGRV-TRGMEVVQNIGAAKT 113
T+S + +G +FFI+LA +TVFG V M+VV+ I T
Sbjct: 154 TISRGSVAWVGSGPEFFISLANHHEWKQSYTVFGLVLPEDMDVVETIAGLPT 205
>At3g45330.1 68416.m04894 lectin protein kinase family protein
contains Serine/Threonine protein kinases active-site
signature, Prosite:PS00108; contains Pfam profiles
PF00069: Protein kinase domain, PF00139: Legume lectins
beta domain, PF00138: Legume lectins alpha domain
Length = 682
Score = 27.9 bits (59), Expect = 8.2
Identities = 12/54 (22%), Positives = 25/54 (46%)
Frame = -2
Query: 295 RAHLKHDRPYTLSMANAGPDTNGSQFFITLAPTPWLDNKHTVFGRVTRGMEVVQ 134
+ H +RP+ A++ + + F L P P +D H + ++ M++ Q
Sbjct: 66 KGHAFFNRPFEFGSASSQSPSFSTHFVCALVPKPGVDGGHGIAFVLSSSMDLTQ 119
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,022,022
Number of Sequences: 28952
Number of extensions: 170943
Number of successful extensions: 495
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 445
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 452
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1794809600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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