BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FWDP01_T7_O24 (844 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPCC1753.04 |tol1||3'|Schizosaccharomyces pombe|chr 3|||Manual 31 0.20 SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces po... 29 0.82 SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9... 28 1.9 SPAC25G10.08 |||translation initiation factor eIF3b |Schizosacch... 27 2.5 SPCC338.17c |rad21||kleisin|Schizosaccharomyces pombe|chr 3|||Ma... 26 7.7 >SPCC1753.04 |tol1||3'|Schizosaccharomyces pombe|chr 3|||Manual Length = 353 Score = 31.1 bits (67), Expect = 0.20 Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 1/66 (1%) Frame = +1 Query: 265 SPPSIG-LGVNVIEATLLEFFVASPPVSSEKDSSEGLTEIRTEYRVYNRVQGRVEIAEPQ 441 SP +IG G I ++L+ + P+ E+DS +T RV+ VQ ++ A Sbjct: 44 SPVTIGDFGAQAIVISMLKDAFPNDPIVGEEDSDFLRENTQTCSRVWELVQETIQHATEY 103 Query: 442 EETGQV 459 +E GQ+ Sbjct: 104 KELGQI 109 >SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces pombe|chr 3|||Manual Length = 562 Score = 29.1 bits (62), Expect = 0.82 Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 1/90 (1%) Frame = -2 Query: 558 TLAIITGAFVFCWLPF-FIMALVMPICQTCVISDYLASFFLWLGYFNSTLNPVIYTIFSP 382 +L I G FVF L F++ L++PI T +S + F WL + V+ I P Sbjct: 84 SLISIPGIFVFLGLYVPFVVTLLIPIDVTWDVSLSIWRFLYWLTF-------VLSWIILP 136 Query: 381 DFRQAFARILFGTHRRGRNKKF*QRCLYYI 292 F Q + F T R + F + YY+ Sbjct: 137 -FVQGYMESKFSTPRSRLSDSFYKNLRYYL 165 >SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9|Schizosaccharomyces pombe|chr 1|||Manual Length = 1223 Score = 27.9 bits (59), Expect = 1.9 Identities = 18/60 (30%), Positives = 27/60 (45%) Frame = +1 Query: 259 INSPPSIGLGVNVIEATLLEFFVASPPVSSEKDSSEGLTEIRTEYRVYNRVQGRVEIAEP 438 INS S + V E L+ S + E+ G+TE +Y V+ +VE+ EP Sbjct: 376 INSAKSTPASIKVNEEILVADHNVSDDILMEEIDDVGITEADFDYFDLPNVEEKVEMIEP 435 >SPAC25G10.08 |||translation initiation factor eIF3b |Schizosaccharomyces pombe|chr 1|||Manual Length = 725 Score = 27.5 bits (58), Expect = 2.5 Identities = 15/60 (25%), Positives = 30/60 (50%), Gaps = 1/60 (1%) Frame = +1 Query: 358 SSEGLTEIRTEYRVYNRVQGRVEIAEPQEETGQVIADHARL-ADWHHQRHDEERKPAEHK 534 + E + +IR + + YNR+ +IAE ++ A +L ++W R + + AE + Sbjct: 631 TKEDMKKIRKKLKDYNRLFDEEDIAEQSSANRELAARRRQLISEWQKYRDEVIARVAEER 690 >SPCC338.17c |rad21||kleisin|Schizosaccharomyces pombe|chr 3|||Manual Length = 628 Score = 25.8 bits (54), Expect = 7.7 Identities = 10/23 (43%), Positives = 14/23 (60%) Frame = -2 Query: 426 FNSTLNPVIYTIFSPDFRQAFAR 358 F+S LNP + + DF+QA R Sbjct: 416 FSSNLNPKVNELLQADFKQAILR 438 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,719,033 Number of Sequences: 5004 Number of extensions: 49821 Number of successful extensions: 192 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 175 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 191 length of database: 2,362,478 effective HSP length: 72 effective length of database: 2,002,190 effective search space used: 416455520 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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