Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_O24
         (844 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1753.04 |tol1||3'|Schizosaccharomyces pombe|chr 3|||Manual         31   0.20 
SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces po...    29   0.82 
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9...    28   1.9  
SPAC25G10.08 |||translation initiation factor eIF3b |Schizosacch...    27   2.5  
SPCC338.17c |rad21||kleisin|Schizosaccharomyces pombe|chr 3|||Ma...    26   7.7  

>SPCC1753.04 |tol1||3'|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 353

 Score = 31.1 bits (67), Expect = 0.20
 Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
 Frame = +1

Query: 265 SPPSIG-LGVNVIEATLLEFFVASPPVSSEKDSSEGLTEIRTEYRVYNRVQGRVEIAEPQ 441
           SP +IG  G   I  ++L+    + P+  E+DS       +T  RV+  VQ  ++ A   
Sbjct: 44  SPVTIGDFGAQAIVISMLKDAFPNDPIVGEEDSDFLRENTQTCSRVWELVQETIQHATEY 103

Query: 442 EETGQV 459
           +E GQ+
Sbjct: 104 KELGQI 109


>SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 562

 Score = 29.1 bits (62), Expect = 0.82
 Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 1/90 (1%)
 Frame = -2

Query: 558 TLAIITGAFVFCWLPF-FIMALVMPICQTCVISDYLASFFLWLGYFNSTLNPVIYTIFSP 382
           +L  I G FVF  L   F++ L++PI  T  +S  +  F  WL +       V+  I  P
Sbjct: 84  SLISIPGIFVFLGLYVPFVVTLLIPIDVTWDVSLSIWRFLYWLTF-------VLSWIILP 136

Query: 381 DFRQAFARILFGTHRRGRNKKF*QRCLYYI 292
            F Q +    F T R   +  F +   YY+
Sbjct: 137 -FVQGYMESKFSTPRSRLSDSFYKNLRYYL 165


>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
           Srb9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1223

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 18/60 (30%), Positives = 27/60 (45%)
 Frame = +1

Query: 259 INSPPSIGLGVNVIEATLLEFFVASPPVSSEKDSSEGLTEIRTEYRVYNRVQGRVEIAEP 438
           INS  S    + V E  L+     S  +  E+    G+TE   +Y     V+ +VE+ EP
Sbjct: 376 INSAKSTPASIKVNEEILVADHNVSDDILMEEIDDVGITEADFDYFDLPNVEEKVEMIEP 435


>SPAC25G10.08 |||translation initiation factor eIF3b
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 725

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 15/60 (25%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
 Frame = +1

Query: 358 SSEGLTEIRTEYRVYNRVQGRVEIAEPQEETGQVIADHARL-ADWHHQRHDEERKPAEHK 534
           + E + +IR + + YNR+    +IAE      ++ A   +L ++W   R +   + AE +
Sbjct: 631 TKEDMKKIRKKLKDYNRLFDEEDIAEQSSANRELAARRRQLISEWQKYRDEVIARVAEER 690


>SPCC338.17c |rad21||kleisin|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 628

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -2

Query: 426 FNSTLNPVIYTIFSPDFRQAFAR 358
           F+S LNP +  +   DF+QA  R
Sbjct: 416 FSSNLNPKVNELLQADFKQAILR 438


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,719,033
Number of Sequences: 5004
Number of extensions: 49821
Number of successful extensions: 192
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 416455520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)