Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_O24
         (844 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0439 - 3183975-3183989,3184044-3184132,3184767-3184840,318...    30   2.7  
02_02_0489 + 10869482-10871218                                         29   3.5  
06_01_1009 - 7859357-7859405,7860476-7860660,7860747-7860821,786...    28   8.1  

>02_01_0439 -
           3183975-3183989,3184044-3184132,3184767-3184840,
           3184935-3185029,3185585-3185677,3185754-3185851,
           3185947-3186044,3186912-3187159
          Length = 269

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -3

Query: 380 ISVKPSLESFSELTGGDATKNSNSVASITFTP 285
           +S++P L SFS+L  G +  N N    +TF P
Sbjct: 135 LSMQPILPSFSKLESGGSRVNKNGSVMLTFFP 166


>02_02_0489 + 10869482-10871218
          Length = 578

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 17/54 (31%), Positives = 27/54 (50%)
 Frame = -2

Query: 702 NEKCNLXPQKIFLDGHNGSKPEKAIVSAPTHREKKESLEAKRERRAAKTLAIIT 541
           N+K     QK  ++   GS  E A+ ++PT  +KK S + K +  A    A +T
Sbjct: 343 NKKGKTNKQKTGMETKVGSSKEAALAASPTKGKKKGSHKDKLDEEAKSGTAKVT 396


>06_01_1009 -
           7859357-7859405,7860476-7860660,7860747-7860821,
           7860852-7861313,7861411-7861482,7861629-7861775,
           7861888-7862043,7862136-7862306,7862505-7862675,
           7862763-7862828,7864302-7864387,7864505-7864667
          Length = 600

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 15/39 (38%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
 Frame = +3

Query: 588 RETPSFHDESELKRSPFLVSSHCDRRGR-FSGXTDCISR 701
           R +PSFH  S L  S  LV  H     + F G T  + R
Sbjct: 402 RRSPSFHSRSSLSSSSSLVLKHAKGTSKSFDGGTRSLDR 440


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,434,172
Number of Sequences: 37544
Number of extensions: 319807
Number of successful extensions: 931
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 911
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 930
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2338704516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)