Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_O24
         (844 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g00700.1 68417.m00096 C2 domain-containing protein contains I...    30   2.2  
At1g71260.1 68414.m08224 expressed protein                             28   6.8  
At1g32040.1 68414.m03941 hypothetical protein                          28   6.8  
At2g25530.1 68415.m03056 AFG1-like ATPase family protein contain...    28   8.9  
At1g53270.1 68414.m06037 ABC transporter family protein contains...    28   8.9  

>At4g00700.1 68417.m00096 C2 domain-containing protein contains
           INTERPRO:IPR000008 C2 domain
          Length = 1006

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
 Frame = -1

Query: 736 LDEXPGPLRYRKREMQSVXPENLPRRSQW--LETRKGDR 626
           LD+  G +++  RE+QS  P + P   QW  LE ++G++
Sbjct: 342 LDDFVGIVKFDLREVQSRVPPDSPLAPQWYRLENKRGEK 380


>At1g71260.1 68414.m08224 expressed protein
          Length = 238

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 5/52 (9%)
 Frame = -3

Query: 425 STRP*TRLYTRYSV-----RISVKPSLESFSELTGGDATKNSNSVASITFTP 285
           + +P  RL+  YS+      +SV+P L SF+E+  G+   +      +TF P
Sbjct: 47  AAKPSGRLFAPYSIFKGKAALSVEPVLPSFTEIDSGNLRIDRRGSLMMTFMP 98


>At1g32040.1 68414.m03941 hypothetical protein
          Length = 408

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
 Frame = -2

Query: 714 CVTVNEKCNLXPQKIFLDGHNGSKPEKAIVSAPTHRE--KKESLEAKRERR 568
           C+  NEK     +K+  +GH  ++ E   V A   +E  K+E LEA R  R
Sbjct: 234 CLGANEKLAEAEKKLAAEGHARAEAESKEVEATLAKEKAKEEWLEAIRNSR 284


>At2g25530.1 68415.m03056 AFG1-like ATPase family protein contains
           Pfam profile: PF03969 AFG1-like ATPase
          Length = 655

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 17/57 (29%), Positives = 27/57 (47%)
 Frame = +1

Query: 400 YNRVQGRVEIAEPQEETGQVIADHARLADWHHQRHDEERKPAEHKRSRYDCKGLRCS 570
           +  + GR+E  E Q E       H RLA+W  +R +E RK    +  + +  G+  S
Sbjct: 138 FENLFGRLEHFEKQMEDY-----HVRLAEWEKKREEERRKLMVEEAEKKEDDGMWAS 189


>At1g53270.1 68414.m06037 ABC transporter family protein contains
           similarity to ABC transporter GI:10280532 from [Homo
           sapiens]
          Length = 590

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
 Frame = -2

Query: 549 IITGAFVFCW---LPFFIMALVMPICQTCVISDYLASFFLWLGYF 424
           +++ +FV C+   +P FIM        T VIS  + SFFL+ GYF
Sbjct: 475 LMSNSFVACFSALVPNFIMG-------TSVISGLMGSFFLFSGYF 512


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,166,671
Number of Sequences: 28952
Number of extensions: 262121
Number of successful extensions: 797
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 779
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 797
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1950880000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)