Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_O22
         (883 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC887.15c |||sphingosine hydroxylase |Schizosaccharomyces pomb...    28   1.5  
SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces p...    27   4.7  
SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces pombe...    26   6.2  

>SPBC887.15c |||sphingosine hydroxylase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 293

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +2

Query: 179 ILLFSFVILKAIEDKCGYLFKLFTIQL 259
           ++ F+   LK ++D CGY+F    +Q+
Sbjct: 208 VIFFTLSTLKTVDDHCGYVFPYDPLQM 234


>SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1040

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = -1

Query: 376 YDRLIKNIAFYDIGNNDIPHKTTTFN 299
           + R   NI  Y I NND PH    FN
Sbjct: 600 FRRFTMNIGTYIICNNDCPHMVYGFN 625


>SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 504

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +2

Query: 329 VITNVVESNIFNKAVIWHSAGT 394
           +I N++E +  N  ++W SAGT
Sbjct: 110 IIRNLIEQDRCNSMILWGSAGT 131


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,480,499
Number of Sequences: 5004
Number of extensions: 42722
Number of successful extensions: 63
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)