Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_T7_O21
(802 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC070050-1|AAH70050.1| 1022|Homo sapiens SRRM2 protein protein. 37 0.097
AF201422-1|AAF21439.1| 2296|Homo sapiens splicing coactivator su... 37 0.097
AB016092-1|BAA83718.1| 2752|Homo sapiens RNA binding protein pro... 37 0.097
AB016088-1|BAA83714.1| 956|Homo sapiens RNA binding protein pro... 37 0.097
AB016087-1|BAA83713.1| 1262|Homo sapiens RNA binding protein pro... 37 0.097
AB002322-1|BAA20782.3| 2800|Homo sapiens KIAA0324 protein protein. 37 0.097
AC004493-2|AAC08453.1| 1791|Homo sapiens KIAA0324 protein. 34 0.69
AB016091-1|BAA83717.1| 1275|Homo sapiens RNA binding protein pro... 34 0.69
X74370-1|CAA52408.1| 543|Homo sapiens mucin protein. 33 0.91
AK124971-1|BAC86011.1| 172|Homo sapiens protein ( Homo sapiens ... 32 2.1
AK223352-1|BAD97072.1| 507|Homo sapiens nucleoporin 54kDa varia... 31 4.8
AK222752-1|BAD96472.1| 508|Homo sapiens nucleoporin 54kDa varia... 31 4.8
AK001517-1|BAA91735.1| 484|Homo sapiens protein ( Homo sapiens ... 31 4.8
AF157322-1|AAF67488.1| 505|Homo sapiens nucleoporin p54 protein... 31 4.8
U08377-1|AAA19604.1| 951|Homo sapiens protein ( Human homolog o... 31 6.4
Y13472-1|CAA73875.1| 1379|Homo sapiens FIM protein protein. 30 8.5
Y09445-1|CAA70592.1| 513|Homo sapiens TBX5 protein. 30 8.5
X58521-1|CAA41411.1| 522|Homo sapiens nucleoporin p62 protein. 30 8.5
L14076-1|AAA36649.1| 494|Homo sapiens pre-mRNA splicing factor ... 30 8.5
CR541721-1|CAG46522.1| 522|Homo sapiens NUP62 protein. 30 8.5
BT007415-1|AAP36083.1| 494|Homo sapiens splicing factor, argini... 30 8.5
BC101107-1|AAI01108.1| 522|Homo sapiens nucleoporin 62kDa protein. 30 8.5
BC101106-1|AAI01107.1| 522|Homo sapiens nucleoporin 62kDa protein. 30 8.5
BC101105-1|AAI01106.1| 522|Homo sapiens nucleoporin 62kDa protein. 30 8.5
BC101104-1|AAI01105.1| 522|Homo sapiens nucleoporin 62kDa protein. 30 8.5
BC095410-1|AAH95410.1| 522|Homo sapiens nucleoporin 62kDa protein. 30 8.5
BC050717-1|AAH50717.1| 522|Homo sapiens nucleoporin 62kDa protein. 30 8.5
BC036372-1|AAH36372.1| 1377|Homo sapiens zinc finger, MYM-type 2... 30 8.5
BC036187-1|AAH36187.1| 904|Homo sapiens serine/arginine repetit... 30 8.5
BC014842-1|AAH14842.1| 522|Homo sapiens nucleoporin 62kDa protein. 30 8.5
BC003663-1|AAH03663.1| 522|Homo sapiens nucleoporin 62kDa protein. 30 8.5
BC002781-1|AAH02781.1| 494|Homo sapiens splicing factor, argini... 30 8.5
AL590729-1|CAI14326.1| 494|Homo sapiens splicing factor, argini... 30 8.5
AL445686-4|CAI14682.1| 904|Homo sapiens serine/arginine repetit... 30 8.5
AL445686-3|CAI14683.1| 913|Homo sapiens serine/arginine repetit... 30 8.5
AL445648-3|CAH73090.1| 904|Homo sapiens serine/arginine repetit... 30 8.5
AL445648-2|CAH73089.1| 913|Homo sapiens serine/arginine repetit... 30 8.5
AL357500-1|CAH71635.1| 494|Homo sapiens splicing factor, argini... 30 8.5
AL138688-3|CAH71823.1| 755|Homo sapiens zinc finger, MYM-type 2... 30 8.5
AL138688-1|CAH71822.1| 1375|Homo sapiens zinc finger, MYM-type 2... 30 8.5
AL137119-3|CAH70135.1| 755|Homo sapiens zinc finger, MYM-type 2... 30 8.5
AL137119-1|CAH70133.1| 1375|Homo sapiens zinc finger, MYM-type 2... 30 8.5
AJ224901-1|CAA12204.1| 1377|Homo sapiens ZNF198 protein protein. 30 8.5
AJ007676-1|CAA07604.1| 1377|Homo sapiens ZNF198 protein protein. 30 8.5
AF419855-1|AAP97290.1| 820|Homo sapiens Ser/Arg-related nuclear... 30 8.5
AF060181-1|AAC23591.1| 1113|Homo sapiens zinc finger protein pro... 30 8.5
AF048977-1|AAC09321.1| 820|Homo sapiens Ser/Arg-related nuclear... 30 8.5
AF035374-1|AAB88464.1| 699|Homo sapiens Cys-rich protein protein. 30 8.5
AF012126-1|AAC01561.1| 757|Homo sapiens zinc finger protein pro... 30 8.5
AB209856-1|BAD93093.1| 419|Homo sapiens splicing factor, argini... 30 8.5
>BC070050-1|AAH70050.1| 1022|Homo sapiens SRRM2 protein protein.
Length = 1022
Score = 36.7 bits (81), Expect = 0.097
Identities = 28/104 (26%), Positives = 52/104 (50%), Gaps = 1/104 (0%)
Frame = -3
Query: 767 RGTSTSKGPCGQXLPRAYSQTSXLPRREARPIXR*KNQCPTPLKYTLT-AQCPSMSRSQF 591
RG S S+ P + R+ S+T R +R R +++ TP + + ++ P+ RS+
Sbjct: 570 RGRSRSRTPARRG--RSRSRTPARRRSRSRTPTRRRSRSRTPARRGRSRSRTPARRRSRT 627
Query: 590 RTPSRYQCPPLTPSRSTSRTQ*KRPCRSQLTSPSTGHTQSTSRS 459
R+P R + +P+R + R++ + P R + T + SRS
Sbjct: 628 RSPVRRRSRSRSPARRSGRSRSRTPARRGRSRSRTPARRGRSRS 671
>AF201422-1|AAF21439.1| 2296|Homo sapiens splicing coactivator
subunit SRm300 protein.
Length = 2296
Score = 36.7 bits (81), Expect = 0.097
Identities = 28/104 (26%), Positives = 52/104 (50%), Gaps = 1/104 (0%)
Frame = -3
Query: 767 RGTSTSKGPCGQXLPRAYSQTSXLPRREARPIXR*KNQCPTPLKYTLT-AQCPSMSRSQF 591
RG S S+ P + R+ S+T R +R R +++ TP + + ++ P+ RS+
Sbjct: 570 RGRSRSRTPARRG--RSRSRTPARRRSRSRTPTRRRSRSRTPARRGRSRSRTPARRRSRT 627
Query: 590 RTPSRYQCPPLTPSRSTSRTQ*KRPCRSQLTSPSTGHTQSTSRS 459
R+P R + +P+R + R++ + P R + T + SRS
Sbjct: 628 RSPVRRRSRSRSPARRSGRSRSRTPARRGRSRSRTPARRGRSRS 671
Score = 36.7 bits (81), Expect = 0.097
Identities = 37/106 (34%), Positives = 55/106 (51%), Gaps = 6/106 (5%)
Frame = -3
Query: 722 RAYSQTSXLPRREAR----PIXR*KNQCPTPLKYTLTAQCPSMSRSQFRTPSRYQCPPLT 555
R+ S+ S + RR +R P+ R +++ TP T + S + R SR + PP+T
Sbjct: 1910 RSRSRASPVSRRRSRSRTPPVTRRRSRSRTP---TTRRRSRSRTPPVTRRRSRSRTPPVT 1966
Query: 554 PSRSTSRTQ--*KRPCRSQLTSPSTGHTQSTSRSTCLCTLRSPYRT 423
RS SRT +R RS+ TSP T +S SR++ + RS RT
Sbjct: 1967 RRRSRSRTSPITRRRSRSR-TSPVT-RRRSRSRTSPVTRRRSRSRT 2010
>AB016092-1|BAA83718.1| 2752|Homo sapiens RNA binding protein
protein.
Length = 2752
Score = 36.7 bits (81), Expect = 0.097
Identities = 28/104 (26%), Positives = 52/104 (50%), Gaps = 1/104 (0%)
Frame = -3
Query: 767 RGTSTSKGPCGQXLPRAYSQTSXLPRREARPIXR*KNQCPTPLKYTLT-AQCPSMSRSQF 591
RG S S+ P + R+ S+T R +R R +++ TP + + ++ P+ RS+
Sbjct: 570 RGRSRSRTPARRG--RSRSRTPARRRSRSRTPTRRRSRSRTPARRGRSRSRTPARRRSRT 627
Query: 590 RTPSRYQCPPLTPSRSTSRTQ*KRPCRSQLTSPSTGHTQSTSRS 459
R+P R + +P+R + R++ + P R + T + SRS
Sbjct: 628 RSPVRRRSRSRSPARRSGRSRSRTPARRGRSRSRTPARRGRSRS 671
Score = 33.9 bits (74), Expect = 0.69
Identities = 37/128 (28%), Positives = 57/128 (44%), Gaps = 4/128 (3%)
Frame = -3
Query: 779 PRIXRGTSTSKGPCGQXLPRAYSQTSXLPRREAR----PIXR*KNQCPTPLKYTLTAQCP 612
P + R S S+ P + R+ S+T + RR +R P+ R +++ T +
Sbjct: 1928 PPVTRRRSRSRTPTTRR--RSRSRTPPVTRRRSRSRTPPVTRRRSRSRT--SPITRRRSR 1983
Query: 611 SMSRSQFRTPSRYQCPPLTPSRSTSRTQ*KRPCRSQLTSPSTGHTQSTSRSTCLCTLRSP 432
S + R SR + P+T RS SRT RS+ +P +S SR+ L RS
Sbjct: 1984 SRTSPVTRRRSRSRTSPVTRRRSRSRTSPVTRRRSRSRTPPAIRRRSRSRTPLLPRKRSR 2043
Query: 431 YRTQLRYR 408
R+ L R
Sbjct: 2044 SRSPLAIR 2051
Score = 33.5 bits (73), Expect = 0.91
Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 4/104 (3%)
Frame = -3
Query: 722 RAYSQTSXLPRREAR----PIXR*KNQCPTPLKYTLTAQCPSMSRSQFRTPSRYQCPPLT 555
R+ S+T + RR +R P+ R +++ T + + S + R SR + PP+T
Sbjct: 1875 RSRSRTPLISRRRSRSRTSPVSRRRSRSRTSVT---RRRSRSRASPVSRRRSRSRTPPVT 1931
Query: 554 PSRSTSRTQ*KRPCRSQLTSPSTGHTQSTSRSTCLCTLRSPYRT 423
RS SRT R RS+ +P +S SR+ + RS RT
Sbjct: 1932 RRRSRSRTPTTRR-RSRSRTPPVTRRRSRSRTPPVTRRRSRSRT 1974
Score = 30.3 bits (65), Expect = 8.5
Identities = 32/104 (30%), Positives = 46/104 (44%), Gaps = 4/104 (3%)
Frame = -3
Query: 722 RAYSQTSXLPRREAR----PIXR*KNQCPTPLKYTLTAQCPSMSRSQFRTPSRYQCPPLT 555
R+ S+T + RR +R PI R +++ T + S + R SR + P+T
Sbjct: 1957 RSRSRTPPVTRRRSRSRTSPITRRRSRSRT--SPVTRRRSRSRTSPVTRRRSRSRTSPVT 2014
Query: 554 PSRSTSRTQ*KRPCRSQLTSPSTGHTQSTSRSTCLCTLRSPYRT 423
RS SRT RS+ +P +S SRS RS RT
Sbjct: 2015 RRRSRSRTPPAIRRRSRSRTPLLPRKRSRSRSPLAIRRRSRSRT 2058
>AB016088-1|BAA83714.1| 956|Homo sapiens RNA binding protein
protein.
Length = 956
Score = 36.7 bits (81), Expect = 0.097
Identities = 28/104 (26%), Positives = 52/104 (50%), Gaps = 1/104 (0%)
Frame = -3
Query: 767 RGTSTSKGPCGQXLPRAYSQTSXLPRREARPIXR*KNQCPTPLKYTLT-AQCPSMSRSQF 591
RG S S+ P + R+ S+T R +R R +++ TP + + ++ P+ RS+
Sbjct: 535 RGRSRSRTPARRG--RSRSRTPARRRSRSRTPTRRRSRSRTPARRGRSRSRTPARRRSRT 592
Query: 590 RTPSRYQCPPLTPSRSTSRTQ*KRPCRSQLTSPSTGHTQSTSRS 459
R+P R + +P+R + R++ + P R + T + SRS
Sbjct: 593 RSPVRRRSRSRSPARRSGRSRSRTPARRGRSRSRTPARRGRSRS 636
>AB016087-1|BAA83713.1| 1262|Homo sapiens RNA binding protein
protein.
Length = 1262
Score = 36.7 bits (81), Expect = 0.097
Identities = 28/104 (26%), Positives = 52/104 (50%), Gaps = 1/104 (0%)
Frame = -3
Query: 767 RGTSTSKGPCGQXLPRAYSQTSXLPRREARPIXR*KNQCPTPLKYTLT-AQCPSMSRSQF 591
RG S S+ P + R+ S+T R +R R +++ TP + + ++ P+ RS+
Sbjct: 360 RGRSRSRTPARRG--RSRSRTPARRRSRSRTPTRRRSRSRTPARRGRSRSRTPARRRSRT 417
Query: 590 RTPSRYQCPPLTPSRSTSRTQ*KRPCRSQLTSPSTGHTQSTSRS 459
R+P R + +P+R + R++ + P R + T + SRS
Sbjct: 418 RSPVRRRSRSRSPARRSGRSRSRTPARRGRSRSRTPARRGRSRS 461
>AB002322-1|BAA20782.3| 2800|Homo sapiens KIAA0324 protein protein.
Length = 2800
Score = 36.7 bits (81), Expect = 0.097
Identities = 28/104 (26%), Positives = 52/104 (50%), Gaps = 1/104 (0%)
Frame = -3
Query: 767 RGTSTSKGPCGQXLPRAYSQTSXLPRREARPIXR*KNQCPTPLKYTLT-AQCPSMSRSQF 591
RG S S+ P + R+ S+T R +R R +++ TP + + ++ P+ RS+
Sbjct: 618 RGRSRSRTPARRG--RSRSRTPARRRSRSRTPTRRRSRSRTPARRGRSRSRTPARRRSRT 675
Query: 590 RTPSRYQCPPLTPSRSTSRTQ*KRPCRSQLTSPSTGHTQSTSRS 459
R+P R + +P+R + R++ + P R + T + SRS
Sbjct: 676 RSPVRRRSRSRSPARRSGRSRSRTPARRGRSRSRTPARRGRSRS 719
Score = 33.9 bits (74), Expect = 0.69
Identities = 37/128 (28%), Positives = 57/128 (44%), Gaps = 4/128 (3%)
Frame = -3
Query: 779 PRIXRGTSTSKGPCGQXLPRAYSQTSXLPRREAR----PIXR*KNQCPTPLKYTLTAQCP 612
P + R S S+ P + R+ S+T + RR +R P+ R +++ T +
Sbjct: 1976 PPVTRRRSRSRTPTTRR--RSRSRTPPVTRRRSRSRTPPVTRRRSRSRT--SPITRRRSR 2031
Query: 611 SMSRSQFRTPSRYQCPPLTPSRSTSRTQ*KRPCRSQLTSPSTGHTQSTSRSTCLCTLRSP 432
S + R SR + P+T RS SRT RS+ +P +S SR+ L RS
Sbjct: 2032 SRTSPVTRRRSRSRTSPVTRRRSRSRTSPVTRRRSRSRTPPAIRRRSRSRTPLLPRKRSR 2091
Query: 431 YRTQLRYR 408
R+ L R
Sbjct: 2092 SRSPLAIR 2099
Score = 33.5 bits (73), Expect = 0.91
Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 4/104 (3%)
Frame = -3
Query: 722 RAYSQTSXLPRREAR----PIXR*KNQCPTPLKYTLTAQCPSMSRSQFRTPSRYQCPPLT 555
R+ S+T + RR +R P+ R +++ T + + S + R SR + PP+T
Sbjct: 1923 RSRSRTPLISRRRSRSRTSPVSRRRSRSRTSVT---RRRSRSRASPVSRRRSRSRTPPVT 1979
Query: 554 PSRSTSRTQ*KRPCRSQLTSPSTGHTQSTSRSTCLCTLRSPYRT 423
RS SRT R RS+ +P +S SR+ + RS RT
Sbjct: 1980 RRRSRSRTPTTRR-RSRSRTPPVTRRRSRSRTPPVTRRRSRSRT 2022
Score = 30.3 bits (65), Expect = 8.5
Identities = 32/104 (30%), Positives = 46/104 (44%), Gaps = 4/104 (3%)
Frame = -3
Query: 722 RAYSQTSXLPRREAR----PIXR*KNQCPTPLKYTLTAQCPSMSRSQFRTPSRYQCPPLT 555
R+ S+T + RR +R PI R +++ T + S + R SR + P+T
Sbjct: 2005 RSRSRTPPVTRRRSRSRTSPITRRRSRSRT--SPVTRRRSRSRTSPVTRRRSRSRTSPVT 2062
Query: 554 PSRSTSRTQ*KRPCRSQLTSPSTGHTQSTSRSTCLCTLRSPYRT 423
RS SRT RS+ +P +S SRS RS RT
Sbjct: 2063 RRRSRSRTPPAIRRRSRSRTPLLPRKRSRSRSPLAIRRRSRSRT 2106
>AC004493-2|AAC08453.1| 1791|Homo sapiens KIAA0324 protein.
Length = 1791
Score = 33.9 bits (74), Expect = 0.69
Identities = 37/128 (28%), Positives = 57/128 (44%), Gaps = 4/128 (3%)
Frame = -3
Query: 779 PRIXRGTSTSKGPCGQXLPRAYSQTSXLPRREAR----PIXR*KNQCPTPLKYTLTAQCP 612
P + R S S+ P + R+ S+T + RR +R P+ R +++ T +
Sbjct: 960 PPVTRRRSRSRTPTTRR--RSRSRTPPVTRRRSRSRTPPVTRRRSRSRT--SPITRRRSR 1015
Query: 611 SMSRSQFRTPSRYQCPPLTPSRSTSRTQ*KRPCRSQLTSPSTGHTQSTSRSTCLCTLRSP 432
S + R SR + P+T RS SRT RS+ +P +S SR+ L RS
Sbjct: 1016 SRTSPVTRRRSRSRTSPVTRRRSRSRTSPVTRRRSRSRTPPAIRRRSRSRTPLLPRKRSR 1075
Query: 431 YRTQLRYR 408
R+ L R
Sbjct: 1076 SRSPLAIR 1083
Score = 33.5 bits (73), Expect = 0.91
Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 4/104 (3%)
Frame = -3
Query: 722 RAYSQTSXLPRREAR----PIXR*KNQCPTPLKYTLTAQCPSMSRSQFRTPSRYQCPPLT 555
R+ S+T + RR +R P+ R +++ T + + S + R SR + PP+T
Sbjct: 907 RSRSRTPLISRRRSRSRTSPVSRRRSRSRTSVT---RRRSRSRASPVSRRRSRSRTPPVT 963
Query: 554 PSRSTSRTQ*KRPCRSQLTSPSTGHTQSTSRSTCLCTLRSPYRT 423
RS SRT R RS+ +P +S SR+ + RS RT
Sbjct: 964 RRRSRSRTPTTRR-RSRSRTPPVTRRRSRSRTPPVTRRRSRSRT 1006
Score = 30.3 bits (65), Expect = 8.5
Identities = 32/104 (30%), Positives = 46/104 (44%), Gaps = 4/104 (3%)
Frame = -3
Query: 722 RAYSQTSXLPRREAR----PIXR*KNQCPTPLKYTLTAQCPSMSRSQFRTPSRYQCPPLT 555
R+ S+T + RR +R PI R +++ T + S + R SR + P+T
Sbjct: 989 RSRSRTPPVTRRRSRSRTSPITRRRSRSRT--SPVTRRRSRSRTSPVTRRRSRSRTSPVT 1046
Query: 554 PSRSTSRTQ*KRPCRSQLTSPSTGHTQSTSRSTCLCTLRSPYRT 423
RS SRT RS+ +P +S SRS RS RT
Sbjct: 1047 RRRSRSRTPPAIRRRSRSRTPLLPRKRSRSRSPLAIRRRSRSRT 1090
>AB016091-1|BAA83717.1| 1275|Homo sapiens RNA binding protein
protein.
Length = 1275
Score = 33.9 bits (74), Expect = 0.69
Identities = 37/128 (28%), Positives = 57/128 (44%), Gaps = 4/128 (3%)
Frame = -3
Query: 779 PRIXRGTSTSKGPCGQXLPRAYSQTSXLPRREAR----PIXR*KNQCPTPLKYTLTAQCP 612
P + R S S+ P + R+ S+T + RR +R P+ R +++ T +
Sbjct: 451 PPVTRRRSRSRTPTTRR--RSRSRTPPVTRRRSRSRTPPVTRRRSRSRT--SPITRRRSR 506
Query: 611 SMSRSQFRTPSRYQCPPLTPSRSTSRTQ*KRPCRSQLTSPSTGHTQSTSRSTCLCTLRSP 432
S + R SR + P+T RS SRT RS+ +P +S SR+ L RS
Sbjct: 507 SRTSPVTRRRSRSRTSPVTRRRSRSRTSPVTRRRSRSRTPPAIRRRSRSRTPLLPRKRSR 566
Query: 431 YRTQLRYR 408
R+ L R
Sbjct: 567 SRSPLAIR 574
Score = 33.5 bits (73), Expect = 0.91
Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 4/104 (3%)
Frame = -3
Query: 722 RAYSQTSXLPRREAR----PIXR*KNQCPTPLKYTLTAQCPSMSRSQFRTPSRYQCPPLT 555
R+ S+T + RR +R P+ R +++ T + + S + R SR + PP+T
Sbjct: 398 RSRSRTPLISRRRSRSRTSPVSRRRSRSRTSVT---RRRSRSRASPVSRRRSRSRTPPVT 454
Query: 554 PSRSTSRTQ*KRPCRSQLTSPSTGHTQSTSRSTCLCTLRSPYRT 423
RS SRT R RS+ +P +S SR+ + RS RT
Sbjct: 455 RRRSRSRTPTTRR-RSRSRTPPVTRRRSRSRTPPVTRRRSRSRT 497
Score = 30.3 bits (65), Expect = 8.5
Identities = 32/104 (30%), Positives = 46/104 (44%), Gaps = 4/104 (3%)
Frame = -3
Query: 722 RAYSQTSXLPRREAR----PIXR*KNQCPTPLKYTLTAQCPSMSRSQFRTPSRYQCPPLT 555
R+ S+T + RR +R PI R +++ T + S + R SR + P+T
Sbjct: 480 RSRSRTPPVTRRRSRSRTSPITRRRSRSRT--SPVTRRRSRSRTSPVTRRRSRSRTSPVT 537
Query: 554 PSRSTSRTQ*KRPCRSQLTSPSTGHTQSTSRSTCLCTLRSPYRT 423
RS SRT RS+ +P +S SRS RS RT
Sbjct: 538 RRRSRSRTPPAIRRRSRSRTPLLPRKRSRSRSPLAIRRRSRSRT 581
>X74370-1|CAA52408.1| 543|Homo sapiens mucin protein.
Length = 543
Score = 33.5 bits (73), Expect = 0.91
Identities = 24/66 (36%), Positives = 31/66 (46%)
Frame = -3
Query: 653 CPTPLKYTLTAQCPSMSRSQFRTPSRYQCPPLTPSRSTSRTQ*KRPCRSQLTSPSTGHTQ 474
CP PL+ P S T S Y C PL S +T T P LTSP+T T
Sbjct: 20 CPPPLRGR-----PGSSTELAPTISHYDCSPLD-STATPSTPGTAPPPKVLTSPATTPTA 73
Query: 473 STSRST 456
++S++T
Sbjct: 74 TSSKAT 79
>AK124971-1|BAC86011.1| 172|Homo sapiens protein ( Homo sapiens
cDNA FLJ42981 fis, clone BRTHA2007422. ).
Length = 172
Score = 32.3 bits (70), Expect = 2.1
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = -1
Query: 601 EASSVPRQGTSARPLPRREAHPVPSRKGRAVPS*HP 494
EA R G + P PR+ HP+P + +P+ HP
Sbjct: 20 EAPGATRVGPPSTPAPRKVRHPLPPSQAGILPALHP 55
>AK223352-1|BAD97072.1| 507|Homo sapiens nucleoporin 54kDa variant
protein.
Length = 507
Score = 31.1 bits (67), Expect = 4.8
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +2
Query: 461 FSMWTGYGLSTGMLTGNGTAFSTGYG 538
F TG+G +TG TG GT TG G
Sbjct: 61 FGFGTGFGTTTGTSTGLGTGLGTGLG 86
>AK222752-1|BAD96472.1| 508|Homo sapiens nucleoporin 54kDa variant
protein.
Length = 508
Score = 31.1 bits (67), Expect = 4.8
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +2
Query: 461 FSMWTGYGLSTGMLTGNGTAFSTGYG 538
F TG+G +TG TG GT TG G
Sbjct: 61 FGFGTGFGTTTGTSTGLGTGLGTGLG 86
>AK001517-1|BAA91735.1| 484|Homo sapiens protein ( Homo sapiens
cDNA FLJ10655 fis, clone NT2RP2005933, weakly similar to
NUCLEOPORIN NUP57. ).
Length = 484
Score = 31.1 bits (67), Expect = 4.8
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +2
Query: 461 FSMWTGYGLSTGMLTGNGTAFSTGYG 538
F TG+G +TG TG GT TG G
Sbjct: 61 FGFGTGFGTTTGTSTGLGTGLGTGLG 86
>AF157322-1|AAF67488.1| 505|Homo sapiens nucleoporin p54 protein
protein.
Length = 505
Score = 31.1 bits (67), Expect = 4.8
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +2
Query: 461 FSMWTGYGLSTGMLTGNGTAFSTGYG 538
F TG+G +TG TG GT TG G
Sbjct: 60 FGFGTGFGTTTGTSTGLGTGLGTGLG 85
>U08377-1|AAA19604.1| 951|Homo sapiens protein ( Human homolog of
Drosophila splicing regulator suppressor-of-white-apricot
mRNA, complete cds. ).
Length = 951
Score = 30.7 bits (66), Expect = 6.4
Identities = 29/85 (34%), Positives = 34/85 (40%)
Frame = -3
Query: 743 PCGQXLPRAYSQTSXLPRREARPIXR*KNQCPTPLKYTLTAQCPSMSRSQFRTPSRYQCP 564
P R S PRR A R + + P Y ++ + P SR RT SR
Sbjct: 793 PSAYRTVRRSRSRSRSPRRRAHSPERRREERSVPTAYRVS-RSPGASRK--RTRSRSPHE 849
Query: 563 PLTPSRSTSRTQ*KRPCRSQLTSPS 489
RS SRT K RSQ SPS
Sbjct: 850 KKKKRRSRSRT--KSKARSQSVSPS 872
>Y13472-1|CAA73875.1| 1379|Homo sapiens FIM protein protein.
Length = 1379
Score = 30.3 bits (65), Expect = 8.5
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -2
Query: 531 PVEKAVPFPVNIPVDRPYPVHIEKHVPVHIEK 436
PV VP PV +PV P P+ + +P IE+
Sbjct: 907 PVPTTVPVPVPVPVFLPAPLDSSEKIPAAIEE 938
>Y09445-1|CAA70592.1| 513|Homo sapiens TBX5 protein.
Length = 513
Score = 30.3 bits (65), Expect = 8.5
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = +2
Query: 437 FSMCTGTCFSMWTGYGLSTGMLTGNGTAFSTGY 535
+S CT T WTGY ST LT +S G+
Sbjct: 404 YSSCTVTTVQPWTGYPTSTSPLTSPRGPWSLGW 436
>X58521-1|CAA41411.1| 522|Homo sapiens nucleoporin p62 protein.
Length = 522
Score = 30.3 bits (65), Expect = 8.5
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +2
Query: 437 FSMCTGTCFSMWTGYGLSTGMLTGNGTAFSTGYG 538
FS+ T T + TG+ T L GT FS G G
Sbjct: 60 FSLATQTPATQTTGFTFGTATLASGGTGFSLGIG 93
>L14076-1|AAA36649.1| 494|Homo sapiens pre-mRNA splicing factor
protein.
Length = 494
Score = 30.3 bits (65), Expect = 8.5
Identities = 17/46 (36%), Positives = 25/46 (54%)
Frame = -3
Query: 551 SRSTSRTQ*KRPCRSQLTSPSTGHTQSTSRSTCLCTLRSPYRTQLR 414
SRS S+++ P S+ S S T+S S+S RSP R++ R
Sbjct: 444 SRSNSKSKPNLPSESRSRSKSASKTRSRSKSRSRSASRSPSRSRSR 489
>CR541721-1|CAG46522.1| 522|Homo sapiens NUP62 protein.
Length = 522
Score = 30.3 bits (65), Expect = 8.5
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +2
Query: 437 FSMCTGTCFSMWTGYGLSTGMLTGNGTAFSTGYG 538
FS+ T T + TG+ T L GT FS G G
Sbjct: 60 FSLATQTPATQTTGFTFGTATLASGGTGFSLGIG 93
>BT007415-1|AAP36083.1| 494|Homo sapiens splicing factor,
arginine/serine-rich 4 protein.
Length = 494
Score = 30.3 bits (65), Expect = 8.5
Identities = 17/46 (36%), Positives = 25/46 (54%)
Frame = -3
Query: 551 SRSTSRTQ*KRPCRSQLTSPSTGHTQSTSRSTCLCTLRSPYRTQLR 414
SRS S+++ P S+ S S T+S S+S RSP R++ R
Sbjct: 444 SRSNSKSKPNLPSESRSRSKSASKTRSRSKSRSRSASRSPSRSRSR 489
>BC101107-1|AAI01108.1| 522|Homo sapiens nucleoporin 62kDa protein.
Length = 522
Score = 30.3 bits (65), Expect = 8.5
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +2
Query: 437 FSMCTGTCFSMWTGYGLSTGMLTGNGTAFSTGYG 538
FS+ T T + TG+ T L GT FS G G
Sbjct: 60 FSLATQTPATQTTGFTFGTATLASGGTGFSLGIG 93
>BC101106-1|AAI01107.1| 522|Homo sapiens nucleoporin 62kDa protein.
Length = 522
Score = 30.3 bits (65), Expect = 8.5
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +2
Query: 437 FSMCTGTCFSMWTGYGLSTGMLTGNGTAFSTGYG 538
FS+ T T + TG+ T L GT FS G G
Sbjct: 60 FSLATQTPATQTTGFTFGTATLASGGTGFSLGIG 93
>BC101105-1|AAI01106.1| 522|Homo sapiens nucleoporin 62kDa protein.
Length = 522
Score = 30.3 bits (65), Expect = 8.5
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +2
Query: 437 FSMCTGTCFSMWTGYGLSTGMLTGNGTAFSTGYG 538
FS+ T T + TG+ T L GT FS G G
Sbjct: 60 FSLATQTPATQTTGFTFGTATLASGGTGFSLGIG 93
>BC101104-1|AAI01105.1| 522|Homo sapiens nucleoporin 62kDa protein.
Length = 522
Score = 30.3 bits (65), Expect = 8.5
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +2
Query: 437 FSMCTGTCFSMWTGYGLSTGMLTGNGTAFSTGYG 538
FS+ T T + TG+ T L GT FS G G
Sbjct: 60 FSLATQTPATQTTGFTFGTATLASGGTGFSLGIG 93
>BC095410-1|AAH95410.1| 522|Homo sapiens nucleoporin 62kDa protein.
Length = 522
Score = 30.3 bits (65), Expect = 8.5
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +2
Query: 437 FSMCTGTCFSMWTGYGLSTGMLTGNGTAFSTGYG 538
FS+ T T + TG+ T L GT FS G G
Sbjct: 60 FSLATQTPATQTTGFTFGTATLASGGTGFSLGIG 93
>BC050717-1|AAH50717.1| 522|Homo sapiens nucleoporin 62kDa protein.
Length = 522
Score = 30.3 bits (65), Expect = 8.5
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +2
Query: 437 FSMCTGTCFSMWTGYGLSTGMLTGNGTAFSTGYG 538
FS+ T T + TG+ T L GT FS G G
Sbjct: 60 FSLATQTPATQTTGFTFGTATLASGGTGFSLGIG 93
>BC036372-1|AAH36372.1| 1377|Homo sapiens zinc finger, MYM-type 2
protein.
Length = 1377
Score = 30.3 bits (65), Expect = 8.5
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -2
Query: 531 PVEKAVPFPVNIPVDRPYPVHIEKHVPVHIEK 436
PV VP PV +PV P P+ + +P IE+
Sbjct: 905 PVPTTVPVPVPVPVFLPAPLDSSEKIPAAIEE 936
>BC036187-1|AAH36187.1| 904|Homo sapiens serine/arginine repetitive
matrix 1 protein.
Length = 904
Score = 30.3 bits (65), Expect = 8.5
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = -1
Query: 589 VPRQGTSARPLPRREAHPVPSRKGRAVPS*HPRRQAIPSP 470
+ R+ + + P RR A P P K RA PS P+R+ SP
Sbjct: 600 IQRRYSPSPPPKRRTASPPPPPKRRASPSPPPKRRVSHSP 639
>BC014842-1|AAH14842.1| 522|Homo sapiens nucleoporin 62kDa protein.
Length = 522
Score = 30.3 bits (65), Expect = 8.5
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +2
Query: 437 FSMCTGTCFSMWTGYGLSTGMLTGNGTAFSTGYG 538
FS+ T T + TG+ T L GT FS G G
Sbjct: 60 FSLATQTPATQTTGFTFGTATLASGGTGFSLGIG 93
>BC003663-1|AAH03663.1| 522|Homo sapiens nucleoporin 62kDa protein.
Length = 522
Score = 30.3 bits (65), Expect = 8.5
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +2
Query: 437 FSMCTGTCFSMWTGYGLSTGMLTGNGTAFSTGYG 538
FS+ T T + TG+ T L GT FS G G
Sbjct: 60 FSLATQTPATQTTGFTFGTATLASGGTGFSLGIG 93
>BC002781-1|AAH02781.1| 494|Homo sapiens splicing factor,
arginine/serine-rich 4 protein.
Length = 494
Score = 30.3 bits (65), Expect = 8.5
Identities = 17/46 (36%), Positives = 25/46 (54%)
Frame = -3
Query: 551 SRSTSRTQ*KRPCRSQLTSPSTGHTQSTSRSTCLCTLRSPYRTQLR 414
SRS S+++ P S+ S S T+S S+S RSP R++ R
Sbjct: 444 SRSNSKSKPNLPSESRSRSKSASKTRSRSKSRSRSASRSPSRSRSR 489
>AL590729-1|CAI14326.1| 494|Homo sapiens splicing factor,
arginine/serine-rich 4 protein.
Length = 494
Score = 30.3 bits (65), Expect = 8.5
Identities = 17/46 (36%), Positives = 25/46 (54%)
Frame = -3
Query: 551 SRSTSRTQ*KRPCRSQLTSPSTGHTQSTSRSTCLCTLRSPYRTQLR 414
SRS S+++ P S+ S S T+S S+S RSP R++ R
Sbjct: 444 SRSNSKSKPNLPSESRSRSKSASKTRSRSKSRSRSASRSPSRSRSR 489
>AL445686-4|CAI14682.1| 904|Homo sapiens serine/arginine repetitive
matrix 1 protein.
Length = 904
Score = 30.3 bits (65), Expect = 8.5
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = -1
Query: 589 VPRQGTSARPLPRREAHPVPSRKGRAVPS*HPRRQAIPSP 470
+ R+ + + P RR A P P K RA PS P+R+ SP
Sbjct: 600 IQRRYSPSPPPKRRTASPPPPPKRRASPSPPPKRRVSHSP 639
>AL445686-3|CAI14683.1| 913|Homo sapiens serine/arginine repetitive
matrix 1 protein.
Length = 913
Score = 30.3 bits (65), Expect = 8.5
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = -1
Query: 589 VPRQGTSARPLPRREAHPVPSRKGRAVPS*HPRRQAIPSP 470
+ R+ + + P RR A P P K RA PS P+R+ SP
Sbjct: 609 IQRRYSPSPPPKRRTASPPPPPKRRASPSPPPKRRVSHSP 648
>AL445648-3|CAH73090.1| 904|Homo sapiens serine/arginine repetitive
matrix 1 protein.
Length = 904
Score = 30.3 bits (65), Expect = 8.5
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = -1
Query: 589 VPRQGTSARPLPRREAHPVPSRKGRAVPS*HPRRQAIPSP 470
+ R+ + + P RR A P P K RA PS P+R+ SP
Sbjct: 600 IQRRYSPSPPPKRRTASPPPPPKRRASPSPPPKRRVSHSP 639
>AL445648-2|CAH73089.1| 913|Homo sapiens serine/arginine repetitive
matrix 1 protein.
Length = 913
Score = 30.3 bits (65), Expect = 8.5
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = -1
Query: 589 VPRQGTSARPLPRREAHPVPSRKGRAVPS*HPRRQAIPSP 470
+ R+ + + P RR A P P K RA PS P+R+ SP
Sbjct: 609 IQRRYSPSPPPKRRTASPPPPPKRRASPSPPPKRRVSHSP 648
>AL357500-1|CAH71635.1| 494|Homo sapiens splicing factor,
arginine/serine-rich 4 protein.
Length = 494
Score = 30.3 bits (65), Expect = 8.5
Identities = 17/46 (36%), Positives = 25/46 (54%)
Frame = -3
Query: 551 SRSTSRTQ*KRPCRSQLTSPSTGHTQSTSRSTCLCTLRSPYRTQLR 414
SRS S+++ P S+ S S T+S S+S RSP R++ R
Sbjct: 444 SRSNSKSKPNLPSESRSRSKSASKTRSRSKSRSRSASRSPSRSRSR 489
>AL138688-3|CAH71823.1| 755|Homo sapiens zinc finger, MYM-type 2
protein.
Length = 755
Score = 30.3 bits (65), Expect = 8.5
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -2
Query: 531 PVEKAVPFPVNIPVDRPYPVHIEKHVPVHIEK 436
PV VP PV +PV P P+ + +P IE+
Sbjct: 283 PVPTTVPVPVPVPVFLPAPLDSSEKIPAAIEE 314
>AL138688-1|CAH71822.1| 1375|Homo sapiens zinc finger, MYM-type 2
protein.
Length = 1375
Score = 30.3 bits (65), Expect = 8.5
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -2
Query: 531 PVEKAVPFPVNIPVDRPYPVHIEKHVPVHIEK 436
PV VP PV +PV P P+ + +P IE+
Sbjct: 903 PVPTTVPVPVPVPVFLPAPLDSSEKIPAAIEE 934
>AL137119-3|CAH70135.1| 755|Homo sapiens zinc finger, MYM-type 2
protein.
Length = 755
Score = 30.3 bits (65), Expect = 8.5
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -2
Query: 531 PVEKAVPFPVNIPVDRPYPVHIEKHVPVHIEK 436
PV VP PV +PV P P+ + +P IE+
Sbjct: 283 PVPTTVPVPVPVPVFLPAPLDSSEKIPAAIEE 314
>AL137119-1|CAH70133.1| 1375|Homo sapiens zinc finger, MYM-type 2
protein.
Length = 1375
Score = 30.3 bits (65), Expect = 8.5
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -2
Query: 531 PVEKAVPFPVNIPVDRPYPVHIEKHVPVHIEK 436
PV VP PV +PV P P+ + +P IE+
Sbjct: 903 PVPTTVPVPVPVPVFLPAPLDSSEKIPAAIEE 934
>AJ224901-1|CAA12204.1| 1377|Homo sapiens ZNF198 protein protein.
Length = 1377
Score = 30.3 bits (65), Expect = 8.5
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -2
Query: 531 PVEKAVPFPVNIPVDRPYPVHIEKHVPVHIEK 436
PV VP PV +PV P P+ + +P IE+
Sbjct: 905 PVPTTVPVPVPVPVFLPAPLDSSEKIPAAIEE 936
>AJ007676-1|CAA07604.1| 1377|Homo sapiens ZNF198 protein protein.
Length = 1377
Score = 30.3 bits (65), Expect = 8.5
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -2
Query: 531 PVEKAVPFPVNIPVDRPYPVHIEKHVPVHIEK 436
PV VP PV +PV P P+ + +P IE+
Sbjct: 905 PVPTTVPVPVPVPVFLPAPLDSSEKIPAAIEE 936
>AF419855-1|AAP97290.1| 820|Homo sapiens Ser/Arg-related nuclear
matrix protein protein.
Length = 820
Score = 30.3 bits (65), Expect = 8.5
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = -1
Query: 589 VPRQGTSARPLPRREAHPVPSRKGRAVPS*HPRRQAIPSP 470
+ R+ + + P RR A P P K RA PS P+R+ SP
Sbjct: 598 IQRRYSPSPPPKRRTASPPPPPKRRASPSPPPKRRVSHSP 637
>AF060181-1|AAC23591.1| 1113|Homo sapiens zinc finger protein
protein.
Length = 1113
Score = 30.3 bits (65), Expect = 8.5
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -2
Query: 531 PVEKAVPFPVNIPVDRPYPVHIEKHVPVHIEK 436
PV VP PV +PV P P+ + +P IE+
Sbjct: 641 PVPTTVPVPVPVPVFLPAPLDSSEKIPAAIEE 672
>AF048977-1|AAC09321.1| 820|Homo sapiens Ser/Arg-related nuclear
matrix protein protein.
Length = 820
Score = 30.3 bits (65), Expect = 8.5
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = -1
Query: 589 VPRQGTSARPLPRREAHPVPSRKGRAVPS*HPRRQAIPSP 470
+ R+ + + P RR A P P K RA PS P+R+ SP
Sbjct: 598 IQRRYSPSPPPKRRTASPPPPPKRRASPSPPPKRRVSHSP 637
>AF035374-1|AAB88464.1| 699|Homo sapiens Cys-rich protein protein.
Length = 699
Score = 30.3 bits (65), Expect = 8.5
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -2
Query: 531 PVEKAVPFPVNIPVDRPYPVHIEKHVPVHIEK 436
PV VP PV +PV P P+ + +P IE+
Sbjct: 633 PVPTTVPVPVPVPVFLPAPLDSSEKIPAAIEE 664
>AF012126-1|AAC01561.1| 757|Homo sapiens zinc finger protein
protein.
Length = 757
Score = 30.3 bits (65), Expect = 8.5
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -2
Query: 531 PVEKAVPFPVNIPVDRPYPVHIEKHVPVHIEK 436
PV VP PV +PV P P+ + +P IE+
Sbjct: 285 PVPTTVPVPVPVPVFLPAPLDSSEKIPAAIEE 316
>AB209856-1|BAD93093.1| 419|Homo sapiens splicing factor,
arginine/serine-rich 4 variant protein.
Length = 419
Score = 30.3 bits (65), Expect = 8.5
Identities = 17/46 (36%), Positives = 25/46 (54%)
Frame = -3
Query: 551 SRSTSRTQ*KRPCRSQLTSPSTGHTQSTSRSTCLCTLRSPYRTQLR 414
SRS S+++ P S+ S S T+S S+S RSP R++ R
Sbjct: 369 SRSNSKSKPNLPSESRSRSKSASKTRSRSKSRSRSASRSPSRSRSR 414
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 79,456,362
Number of Sequences: 237096
Number of extensions: 1364191
Number of successful extensions: 7990
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 7218
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7848
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9869080686
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -