Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_T7_O21
(802 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g40040.1 68415.m04920 defective chloroplasts and leaves prote... 35 0.072
At4g35785.2 68417.m05083 transformer serine/arginine-rich ribonu... 33 0.29
At4g00890.1 68417.m00120 proline-rich family protein contains pr... 31 1.2
At4g32420.1 68417.m04615 peptidyl-prolyl cis-trans isomerase cyc... 30 1.6
At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative stro... 30 2.1
At4g12480.1 68417.m01973 protease inhibitor/seed storage/lipid t... 29 2.7
At3g16460.2 68416.m02097 jacalin lectin family protein contains ... 29 2.7
At3g16460.1 68416.m02098 jacalin lectin family protein contains ... 29 2.7
At4g35785.1 68417.m05082 transformer serine/arginine-rich ribonu... 29 3.6
At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-l... 29 3.6
At2g29210.1 68415.m03550 splicing factor PWI domain-containing p... 29 4.7
At1g25550.1 68414.m03172 myb family transcription factor contain... 28 6.3
>At2g40040.1 68415.m04920 defective chloroplasts and leaves
protein-related / DCL protein-related similar to DCL
protein, chloroplast precursor (Defective chloroplasts
and leaves protein) (Swiss-Prot:Q42463) [Lycopersicon
esculentum]
Length = 839
Score = 34.7 bits (76), Expect = 0.072
Identities = 24/71 (33%), Positives = 40/71 (56%), Gaps = 3/71 (4%)
Frame = -3
Query: 623 AQCPSMSRSQFRTPSRYQCPPLTPSRSTSRTQ*KRPCRSQLTSPSTGHTQSTSRSTCLC- 447
AQ S S++Q ++ S+ Q + S+S S++Q + +SQ SPS TQS S++
Sbjct: 768 AQAQSPSQTQSQSQSQSQSQSQSQSQSQSQSQSQSQSQSQSQSPSQTQTQSPSQTQAQAQ 827
Query: 446 --TLRSPYRTQ 420
+ +SP +TQ
Sbjct: 828 SPSSQSPSQTQ 838
>At4g35785.2 68417.m05083 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 141
Score = 32.7 bits (71), Expect = 0.29
Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 4/68 (5%)
Frame = -3
Query: 677 PIXR*KNQCPTPLKYTLTAQCPSMSRSQ----FRTPSRYQCPPLTPSRSTSRTQ*KRPCR 510
P R ++ P+P K ++ S SRS+ R+ SR P++PSRS R++ + R
Sbjct: 5 PQRRRDSRSPSPRKERARSRSRSRSRSRSRPRLRSRSRSLPRPVSPSRSRGRSRSRSRGR 64
Query: 509 SQLTSPST 486
S++ +P T
Sbjct: 65 SEVENPGT 72
>At4g00890.1 68417.m00120 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 431
Score = 30.7 bits (66), Expect = 1.2
Identities = 17/53 (32%), Positives = 23/53 (43%)
Frame = -3
Query: 650 PTPLKYTLTAQCPSMSRSQFRTPSRYQCPPLTPSRSTSRTQ*KRPCRSQLTSP 492
P P + PSM + PPL PS+S T+ + P SQ +SP
Sbjct: 175 PPPQEAKTPPSSPSMMLNATEEFESQPKPPLLPSKSIDETRLRSPLMSQASSP 227
>At4g32420.1 68417.m04615 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein weak similarity to
CARS-Cyp [Homo sapiens] GI:1117968; contains Pfam
profile PF00160: peptidyl-prolyl cis-trans isomerase,
cyclophilin-type
Length = 837
Score = 30.3 bits (65), Expect = 1.6
Identities = 31/115 (26%), Positives = 48/115 (41%)
Frame = -3
Query: 758 STSKGPCGQXLPRAYSQTSXLPRREARPIXR*KNQCPTPLKYTLTAQCPSMSRSQFRTPS 579
S S+G G+ R S+ S R R R ++ P L ++ P+ + + S
Sbjct: 504 SASRGSLGRGPLRRSSRRSP-SRSPVRSSRRSLSRSPIQLSRRSLSRSPTRLSRRSLSRS 562
Query: 578 RYQCPPLTPSRSTSRTQ*KRPCRSQLTSPSTGHTQSTSRSTCLCTLRSPYRTQLR 414
+ P + SRS R+ K RS + S ++S RS+ RSP R R
Sbjct: 563 PIRSPRKSVSRSPVRSSRKSVSRSPVRSSRRRISRSPVRSSRKSVSRSPIRLSRR 617
Score = 27.9 bits (59), Expect = 8.3
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = -3
Query: 584 PSRYQCPPLTPSRSTSRTQ*KRPCRSQLTSPSTGHTQSTSRS 459
PS+ + L+P R+ S++ P RSQ SPS+ + RS
Sbjct: 374 PSKSRSRSLSPKRTVSKSTSVSPRRSQSKSPSSSPRWNGGRS 415
>At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative strong
similarity to SP|O22315 Pre-mRNA splicing factor SF2
(SR1 protein) {Arabidopsis thaliana}
Length = 300
Score = 29.9 bits (64), Expect = 2.1
Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Frame = -3
Query: 623 AQCPSMSRSQFRTPSRYQCPPLTPSRSTSRTQ*KRPCRSQLTSP--STGHTQSTSRSTCL 450
++ PS SRS+ R+ SR + + SRS S ++ K P + SP S + S SRS
Sbjct: 205 SRSPSRSRSRSRSRSRSRGRGRSHSRSRSLSRSKSPRKDLSKSPRRSLSRSISKSRSPSP 264
Query: 449 CTLRSPYRTQLR 414
+SP R R
Sbjct: 265 DKKKSPPRAMSR 276
>At4g12480.1 68417.m01973 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein identical to
pEARLI 1 (Accession No. L43080): an Arabidopsis member
of a conserved gene family (PGF95-099), Plant Physiol.
109 (4), 1497 (1995); contains Pfam protease
inhibitor/seed storage/LTP family domain PF00234
Length = 168
Score = 29.5 bits (63), Expect = 2.7
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -1
Query: 565 RPLPRREAHPVPSRKGRAVPS*HPRRQAIPSP 470
+P+P + PVPS K + VPS ++PSP
Sbjct: 37 KPVPSPKPKPVPSPKPKPVPSPSVPSPSVPSP 68
>At3g16460.2 68416.m02097 jacalin lectin family protein contains
Pfam profile: PF01419 jacalin-like lectin domain;
similar to myrosinase binding protein [Brassica napus]
GI:1711296, GI:1655824, myrosinase-binding protein
homolog [Arabidopsis thaliana] GI:2997767; contains Pfam
profile PF01419 jacalin-like lectin family
Length = 647
Score = 29.5 bits (63), Expect = 2.7
Identities = 15/30 (50%), Positives = 15/30 (50%)
Frame = +2
Query: 449 TGTCFSMWTGYGLSTGMLTGNGTAFSTGYG 538
TGT TG G TG TG GT TG G
Sbjct: 138 TGTGTGTGTGTGTGTGTGTGTGTGTGTGTG 167
>At3g16460.1 68416.m02098 jacalin lectin family protein contains
Pfam profile: PF01419 jacalin-like lectin domain;
similar to myrosinase binding protein [Brassica napus]
GI:1711296, GI:1655824, myrosinase-binding protein
homolog [Arabidopsis thaliana] GI:2997767; contains Pfam
profile PF01419 jacalin-like lectin family
Length = 705
Score = 29.5 bits (63), Expect = 2.7
Identities = 15/30 (50%), Positives = 15/30 (50%)
Frame = +2
Query: 449 TGTCFSMWTGYGLSTGMLTGNGTAFSTGYG 538
TGT TG G TG TG GT TG G
Sbjct: 138 TGTGTGTGTGTGTGTGTGTGTGTGTGTGTG 167
>At4g35785.1 68417.m05082 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 140
Score = 29.1 bits (62), Expect = 3.6
Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 4/68 (5%)
Frame = -3
Query: 677 PIXR*KNQCPTPLKYTLTAQCPSMSRS----QFRTPSRYQCPPLTPSRSTSRTQ*KRPCR 510
P R ++ P+P K ++ S SRS + R+ SR P++PSRS R++ R
Sbjct: 5 PQRRRDSRSPSPRKERARSRSRSRSRSRSRPRLRSRSRSLPRPVSPSRSRGRSR-SRSRG 63
Query: 509 SQLTSPST 486
S++ +P T
Sbjct: 64 SEVENPGT 71
>At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-like
SR protein (SRZ22) identical to RSZp22 protein
[Arabidopsis thaliana] gi|2582645|emb|CAA05352, 9G8-like
SR protein [Arabidopsis thaliana] GI:3435094; contains
Pfam profiles PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) and PF00098: Zinc knuckle;
identical to cDNA 9G8-like SR protein (SRZ22) GI:3435093
Length = 200
Score = 29.1 bits (62), Expect = 3.6
Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = -3
Query: 605 SRSQFRTPSRYQCPPLTPSRSTS-RTQ*KRPCRSQLTSPSTGHTQSTSRS 459
S+S+ RTP RY+ P RS S R + P R + SP +S SRS
Sbjct: 125 SKSRSRTPPRYRRSPSYGRRSYSPRARSPPPPRRRSPSPPPARGRSYSRS 174
>At2g29210.1 68415.m03550 splicing factor PWI domain-containing
protein contains Pfam profile PF01480: PWI domain
Length = 878
Score = 28.7 bits (61), Expect = 4.7
Identities = 25/94 (26%), Positives = 36/94 (38%), Gaps = 1/94 (1%)
Frame = -3
Query: 767 RGTSTSKGPCGQXLPRAYSQTSXLP-RREARPIXR*KNQCPTPLKYTLTAQCPSMSRSQF 591
R S P + + + S P RR RP + Q P P + + P+ R
Sbjct: 264 RSVRRSLSPRRRRIHSPFRSRSRSPIRRHRRPTHEGRRQSPAPSRRRRSPSPPARRRRSP 323
Query: 590 RTPSRYQCPPLTPSRSTSRTQ*KRPCRSQLTSPS 489
P+R + P P+R R + P Q SPS
Sbjct: 324 SPPARRRRSPSPPAR---RHRSPTPPARQRRSPS 354
Score = 27.9 bits (59), Expect = 8.3
Identities = 15/31 (48%), Positives = 17/31 (54%)
Frame = -1
Query: 562 PLPRREAHPVPSRKGRAVPS*HPRRQAIPSP 470
P PRR P P R +PS PRR +PSP
Sbjct: 463 PPPRRAGLPSPPPAQR-LPSPPPRRAGLPSP 492
>At1g25550.1 68414.m03172 myb family transcription factor contains
Pfam domain, PF00249: Myb-like DNA-binding domain
Length = 344
Score = 28.3 bits (60), Expect = 6.3
Identities = 23/74 (31%), Positives = 32/74 (43%), Gaps = 2/74 (2%)
Frame = -3
Query: 692 RREARPIXR*KNQCPTPLKYTLTAQCPSMSRSQFRTPSRYQCPPLT--PSRSTSRTQ*KR 519
RR A P+ R + P ++ + S T +R P T P STS + R
Sbjct: 266 RRPATPVVRTGGENPQQRQFMVMEGIWVPSHDT--TNNRVYAPVATQPPQSSTSGERSNR 323
Query: 518 PCRSQLTSPSTGHT 477
C+S TS +T HT
Sbjct: 324 GCKSPATSSTTTHT 337
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,613,620
Number of Sequences: 28952
Number of extensions: 192827
Number of successful extensions: 680
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 575
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 646
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1814318400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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