Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_T7_O20
(803 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P23396 Cluster: 40S ribosomal protein S3; n=174; Eukary... 297 2e-79
UniRef50_Q59N00 Cluster: Likely cytosolic ribosomal protein S3; ... 208 1e-52
UniRef50_Q38EW1 Cluster: 40S ribosomal protein S3, putative; n=4... 207 3e-52
UniRef50_A2DIM3 Cluster: Ribosomal protein S3, putative; n=1; Tr... 169 7e-41
UniRef50_Q22AV9 Cluster: KH domain containing protein; n=3; Olig... 165 2e-39
UniRef50_A7NTL0 Cluster: Chromosome chr18 scaffold_1, whole geno... 157 2e-37
UniRef50_A7NXL1 Cluster: Chromosome chr5 scaffold_2, whole genom... 143 5e-33
UniRef50_Q8SQM3 Cluster: 40S ribosomal protein S3; n=1; Encephal... 141 2e-32
UniRef50_Q7QNT9 Cluster: GLP_157_11435_12088; n=1; Giardia lambl... 119 7e-26
UniRef50_Q8U004 Cluster: 30S ribosomal protein S3P; n=5; Euryarc... 113 4e-24
UniRef50_Q8TRU1 Cluster: 30S ribosomal protein S3P; n=8; Euryarc... 106 7e-22
UniRef50_Q01BA3 Cluster: Putative ribosomal protein; n=1; Ostreo... 103 4e-21
UniRef50_A3CT03 Cluster: 30S ribosomal protein S3P; n=4; Archaea... 103 5e-21
UniRef50_A1RXG6 Cluster: 30S ribosomal protein S3P; n=2; Thermof... 99 1e-19
UniRef50_Q8TX35 Cluster: 30S ribosomal protein S3P; n=1; Methano... 97 3e-19
UniRef50_P20281 Cluster: 30S ribosomal protein S3P; n=5; Halobac... 97 3e-19
UniRef50_UPI00015BB204 Cluster: SSU ribosomal protein S3P; n=1; ... 97 5e-19
UniRef50_O26116 Cluster: 30S ribosomal protein S3P; n=3; Methano... 95 2e-18
UniRef50_Q6LXE7 Cluster: 30S ribosomal protein S3P; n=5; Methano... 95 2e-18
UniRef50_O28360 Cluster: 30S ribosomal protein S3P; n=1; Archaeo... 87 6e-16
UniRef50_Q8ZWI0 Cluster: 30S ribosomal protein S3P; n=6; Pyrobac... 81 4e-14
UniRef50_Q9UXA0 Cluster: 30S ribosomal protein S3P; n=2; Thermop... 80 7e-14
UniRef50_Q4JB46 Cluster: 30S ribosomal protein S3P; n=3; Sulfolo... 80 7e-14
UniRef50_A5DF25 Cluster: Putative uncharacterized protein; n=1; ... 77 4e-13
UniRef50_A3DNB3 Cluster: 30S ribosomal protein S3P; n=1; Staphyl... 75 2e-12
UniRef50_A3H696 Cluster: Ribosomal protein S3-like; n=1; Caldivi... 75 3e-12
UniRef50_UPI00005A35DE Cluster: PREDICTED: similar to 40S riboso... 74 5e-12
UniRef50_Q9HIR5 Cluster: 30S ribosomal protein S3P; n=4; Thermop... 73 6e-12
UniRef50_A0RVX9 Cluster: 30S ribosomal protein S3P; n=2; Thermop... 69 1e-10
UniRef50_Q673S3 Cluster: Ribosomal protein S3; n=2; environmenta... 66 7e-10
UniRef50_Q8LNX7 Cluster: Putative ribosomal protein S3; n=1; Zin... 56 1e-06
UniRef50_A7QEK7 Cluster: Chromosome chr17 scaffold_85, whole gen... 56 1e-06
UniRef50_A7NXL5 Cluster: Chromosome chr5 scaffold_2, whole genom... 56 1e-06
UniRef50_A5ATU8 Cluster: Putative uncharacterized protein; n=1; ... 56 1e-06
UniRef50_Q9RXJ6 Cluster: 30S ribosomal protein S3; n=2; Deinococ... 54 6e-06
UniRef50_Q6KI49 Cluster: 30S ribosomal protein S3; n=9; Mycoplas... 53 1e-05
UniRef50_Q3LWD3 Cluster: Ribosomal protein S3; n=1; Bigelowiella... 52 2e-05
UniRef50_Q74MZ4 Cluster: 30S ribosomal protein S3P; n=2; Nanoarc... 50 7e-05
UniRef50_O83225 Cluster: 30S ribosomal protein S3; n=1; Treponem... 47 5e-04
UniRef50_Q7MTL9 Cluster: 30S ribosomal protein S3; n=19; Bactero... 47 6e-04
UniRef50_A5B260 Cluster: Putative uncharacterized protein; n=1; ... 45 0.003
UniRef50_A6EHQ8 Cluster: 30S ribosomal protein S3; n=1; Pedobact... 44 0.003
UniRef50_P46772 Cluster: 30S ribosomal protein S3; n=5; Thermoto... 43 0.008
UniRef50_Q7UN14 Cluster: 30S ribosomal protein S3; n=3; Planctom... 43 0.008
UniRef50_Q12GW5 Cluster: 30S ribosomal protein S3; n=197; Bacter... 42 0.014
UniRef50_A1KB21 Cluster: 30S ribosomal protein S3; n=67; cellula... 42 0.014
UniRef50_Q8KAH8 Cluster: 30S ribosomal protein S3; n=10; Chlorob... 42 0.024
UniRef50_P46247 Cluster: 30S ribosomal protein S3; n=3; Entomopl... 39 0.13
UniRef50_A6NXD5 Cluster: Putative uncharacterized protein; n=1; ... 39 0.17
UniRef50_Q04G79 Cluster: 30S ribosomal protein S3; n=1; Oenococc... 38 0.22
UniRef50_A0MNG0 Cluster: Putative uncharacterized protein; n=1; ... 38 0.30
UniRef50_A6R2L3 Cluster: Predicted protein; n=1; Ajellomyces cap... 38 0.30
UniRef50_UPI00015BD7E8 Cluster: UPI00015BD7E8 related cluster; n... 38 0.39
UniRef50_Q3ZZL8 Cluster: 30S ribosomal protein S3; n=18; Bacteri... 37 0.52
UniRef50_Q20F10 Cluster: Chloroplast 30S ribosomal protein S3; n... 37 0.68
UniRef50_A5AUQ8 Cluster: Putative uncharacterized protein; n=1; ... 36 0.90
UniRef50_Q9XD30 Cluster: 30S ribosomal protein S3; n=4; Leptospi... 36 1.2
UniRef50_P56798 Cluster: Chloroplast 30S ribosomal protein S3; n... 36 1.2
UniRef50_Q9AA22 Cluster: Putative uncharacterized protein; n=1; ... 35 2.1
UniRef50_Q2JFH0 Cluster: 30S ribosomal protein S3; n=94; Bacteri... 35 2.1
UniRef50_Q9U982 Cluster: Drosophila dodeca-satellite protein 1; ... 35 2.8
UniRef50_UPI0000DA2268 Cluster: PREDICTED: hypothetical protein;... 34 3.6
UniRef50_Q6ABZ1 Cluster: Serine/threonine kinase; n=1; Leifsonia... 34 3.6
UniRef50_Q6A6N2 Cluster: 30S ribosomal protein S3; n=27; Bacteri... 34 3.6
UniRef50_A4X2E1 Cluster: Phage integrase family protein; n=8; Ac... 34 4.8
UniRef50_P0A4C3 Cluster: 30S ribosomal protein S3; n=39; Bacteri... 33 6.4
UniRef50_Q9XDW7 Cluster: PsbAa; n=1; Rhodopseudomonas palustris|... 29 7.2
>UniRef50_P23396 Cluster: 40S ribosomal protein S3; n=174;
Eukaryota|Rep: 40S ribosomal protein S3 - Homo sapiens
(Human)
Length = 243
Score = 297 bits (730), Expect = 2e-79
Identities = 147/175 (84%), Positives = 156/175 (89%)
Frame = -3
Query: 768 QXFKEAKIGGDGVFKAELNEFLTRELAEDGYXXRXXPVTPIRSEIIIMATRTQSVLGEKG 589
Q K+ K DG+FKAELNEFLTRELAEDGY VTP R+EIII+ATRTQ+VLGEKG
Sbjct: 4 QISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLGEKG 63
Query: 588 RRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVL 409
RRIRELT+VVQKRF PE SVELYAEKVATRGLCAIAQAESLRYKL+GGLAVRRACYGVL
Sbjct: 64 RRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACYGVL 123
Query: 408 RFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLR 244
RFIMESGA+GCEVVVSGKLRGQRAKSMKFVDGLMIHSGDP N YV+TA RHVLLR
Sbjct: 124 RFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLR 178
Score = 78.6 bits (185), Expect = 2e-13
Identities = 34/47 (72%), Positives = 37/47 (78%)
Frame = -1
Query: 242 QGVLGIKVKIMLPWDQQGKNGPKKPQPDHILVTEPKDEPVPLEPTSE 102
QGVLGIKVKIMLPWD GK GPKKP PDH+ + EPKDE +P P SE
Sbjct: 179 QGVLGIKVKIMLPWDPTGKIGPKKPLPDHVSIVEPKDEILPTTPISE 225
>UniRef50_Q59N00 Cluster: Likely cytosolic ribosomal protein S3;
n=4; Saccharomycetales|Rep: Likely cytosolic ribosomal
protein S3 - Candida albicans (Yeast)
Length = 251
Score = 208 bits (508), Expect = 1e-52
Identities = 99/172 (57%), Positives = 125/172 (72%)
Frame = -3
Query: 759 KEAKIGGDGVFKAELNEFLTRELAEDGYXXRXXPVTPIRSEIIIMATRTQSVLGEKGRRI 580
K+ K+ DGVF AELNEF TRELAE GY TP + E+I+ A+ TQ VLGE+GRRI
Sbjct: 8 KKKKLVADGVFYAELNEFFTRELAEQGYAGVEVRKTPSKLEVIVKASNTQGVLGEQGRRI 67
Query: 579 RELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFI 400
ELTS++ KRF + + + +YAE+V RGL A QAE+L+ KL+ GL +RRA YGVLRF
Sbjct: 68 HELTSLIVKRFKLSPEGIAIYAERVEERGLSAAVQAEALKAKLLSGLPIRRAAYGVLRFA 127
Query: 399 MESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLR 244
M +GA+G EVV+SGKLR RAKS K+ DG MIHSG P D+++ A RHVL+R
Sbjct: 128 MGAGAKGVEVVISGKLRAARAKSQKYADGFMIHSGQPTRDFIDIAIRHVLMR 179
>UniRef50_Q38EW1 Cluster: 40S ribosomal protein S3, putative; n=4;
Trypanosoma|Rep: 40S ribosomal protein S3, putative -
Trypanosoma brucei
Length = 266
Score = 207 bits (505), Expect = 3e-52
Identities = 100/165 (60%), Positives = 127/165 (76%)
Frame = -3
Query: 738 DGVFKAELNEFLTRELAEDGYXXRXXPVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVV 559
DGVF AEL EFL RELA+DG+ VTP R+EI+I +T+T+ VLGEKGRRIRELT+ +
Sbjct: 65 DGVFYAELFEFLKRELADDGFAGVEHRVTPTRTEIVIRSTKTREVLGEKGRRIRELTACL 124
Query: 558 QKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARG 379
Q+RFN E ++L+AE+V RGL A+AQAESLR+KL+ L VRRA G++R++MESGA+G
Sbjct: 125 QQRFNYKEGKLQLFAERVEVRGLSAMAQAESLRFKLLSNLQVRRAAMGIIRYVMESGAKG 184
Query: 378 CEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLR 244
CEV + GK++GQRAKSM F DG MI SG +V+TATRH LR
Sbjct: 185 CEVTIGGKIKGQRAKSMTFRDGYMIKSGTAHKHFVDTATRHCHLR 229
>UniRef50_A2DIM3 Cluster: Ribosomal protein S3, putative; n=1;
Trichomonas vaginalis G3|Rep: Ribosomal protein S3,
putative - Trichomonas vaginalis G3
Length = 216
Score = 169 bits (411), Expect = 7e-41
Identities = 82/197 (41%), Positives = 125/197 (63%)
Frame = -3
Query: 759 KEAKIGGDGVFKAELNEFLTRELAEDGYXXRXXPVTPIRSEIIIMATRTQSVLGEKGRRI 580
K +I G+F AELNE LTREL ++GY TP R+EIII A T+ + GRR+
Sbjct: 8 KVRRIIETGLFYAELNELLTRELTKEGYGGCEVRQTPTRTEIIIKAANTKEFVDNHGRRL 67
Query: 579 RELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFI 400
+E+ ++QKR+ + E S+E++ +++ +GL A+ Q ESLRYKLI + RRA Y ++RF+
Sbjct: 68 QEVRMMIQKRWRLKEDSLEIFIDRIQRKGLSALNQLESLRYKLIARIPARRAAYSIIRFV 127
Query: 399 MESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRXRSTRNQG 220
M++GARGCEV +SGKLRG RA + K+ +G M+ SGD +V A H+ ++ + +
Sbjct: 128 MDAGARGCEVAISGKLRGARASTSKYKEGYMVKSGDVTKQFVTQAVGHIPMKQATIGIRV 187
Query: 219 QNHVAVGPARQERPEEA 169
+A P+ P+E+
Sbjct: 188 LIMLAQDPSGISGPKES 204
Score = 41.1 bits (92), Expect = 0.032
Identities = 20/37 (54%), Positives = 24/37 (64%)
Frame = -1
Query: 242 QGVLGIKVKIMLPWDQQGKNGPKKPQPDHILVTEPKD 132
Q +GI+V IML D G +GPK+ QPD I V E KD
Sbjct: 180 QATIGIRVLIMLAQDPSGISGPKESQPDVIKVHEAKD 216
>UniRef50_Q22AV9 Cluster: KH domain containing protein; n=3;
Oligohymenophorea|Rep: KH domain containing protein -
Tetrahymena thermophila SB210
Length = 253
Score = 165 bits (400), Expect = 2e-39
Identities = 74/172 (43%), Positives = 115/172 (66%)
Frame = -3
Query: 759 KEAKIGGDGVFKAELNEFLTRELAEDGYXXRXXPVTPIRSEIIIMATRTQSVLGEKGRRI 580
K+ K DGVF AEL+ F ++ L + GY TP ++EI I AT+ Q V+G +G++
Sbjct: 20 KKKKFVADGVFNAELHSFFSKSLQDAGYAGIEVRRTPTKTEIRIKATKPQQVIGVEGKKH 79
Query: 579 RELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFI 400
+ELT +QKRF + ++++AE + +GLCA AQ E++ YKL+ + VR A +++ +
Sbjct: 80 KELTQFLQKRFGYSDDQIQIWAEPIKFKGLCASAQVEAMNYKLLKDVPVRLAANYIIKSV 139
Query: 399 MESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLR 244
++ GA+GCE+++SGKL+ QRAK+MKF G MI +G P NDY++ A RHV +
Sbjct: 140 IQDGAKGCEIIISGKLKQQRAKTMKFKQGYMICTGQPKNDYIDVAVRHVFFK 191
Score = 41.9 bits (94), Expect = 0.018
Identities = 19/41 (46%), Positives = 28/41 (68%), Gaps = 2/41 (4%)
Frame = -1
Query: 251 FSGQGVLGIKVKIMLPWDQQ--GKNGPKKPQPDHILVTEPK 135
F QG++G+KVKIMLP++ K G K P PD++++ PK
Sbjct: 189 FFKQGIMGVKVKIMLPYEPNPAKKFGVKTPIPDNVIIHPPK 229
>UniRef50_A7NTL0 Cluster: Chromosome chr18 scaffold_1, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr18 scaffold_1, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 617
Score = 157 bits (382), Expect = 2e-37
Identities = 95/173 (54%), Positives = 109/173 (63%)
Frame = -3
Query: 768 QXFKEAKIGGDGVFKAELNEFLTRELAEDGYXXRXXPVTPIRSEIIIMATRTQSVLGEKG 589
Q K+ K DGVF A LNE LTREL E+GY VTP+ +EIII AT+T +VLGEKG
Sbjct: 4 QMSKKRKFAVDGVFFAGLNEVLTRELVENGYSGDEVRVTPMCTEIIIRATQTHNVLGEKG 63
Query: 588 RRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVL 409
++I+ELTSVVQKRF E SVEL AEKV RG AIAQAESLRYKL+GGLA+
Sbjct: 64 KKIKELTSVVQKRFEFLENSVELCAEKVNNRGFYAIAQAESLRYKLLGGLAM-------- 115
Query: 408 RFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVL 250
L QRAKSMKF DG +I SG P DY++ A RHVL
Sbjct: 116 ------------------LCAQRAKSMKFKDGYLISSGQPVKDYIDLAVRHVL 150
Score = 43.6 bits (98), Expect = 0.006
Identities = 19/35 (54%), Positives = 22/35 (62%)
Frame = -1
Query: 242 QGVLGIKVKIMLPWDQQGKNGPKKPQPDHILVTEP 138
QGVLGIKVKIM WD +GK P PD + + P
Sbjct: 152 QGVLGIKVKIMFNWDPKGKQSLTTPLPDLVTIQTP 186
>UniRef50_A7NXL1 Cluster: Chromosome chr5 scaffold_2, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr5 scaffold_2, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 243
Score = 143 bits (346), Expect = 5e-33
Identities = 78/132 (59%), Positives = 92/132 (69%)
Frame = -3
Query: 639 EIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLR 460
EIII AT+TQ+VLG+KGR+IRELTSVVQKRF E +VELYAEK R AIAQAESLR
Sbjct: 101 EIIIHATQTQNVLGKKGRKIRELTSVVQKRFEFLENNVELYAEKFNNRVFYAIAQAESLR 160
Query: 459 YKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCND 280
+KL+GGL VRRA YGVL F+MESG +GCEV + +I SG P D
Sbjct: 161 FKLLGGLVVRRAGYGVLSFVMESGTKGCEV----------------IGWYIISSGQPVKD 204
Query: 279 YVNTATRHVLLR 244
Y+N+ RHVLL+
Sbjct: 205 YINSVVRHVLLK 216
>UniRef50_Q8SQM3 Cluster: 40S ribosomal protein S3; n=1;
Encephalitozoon cuniculi|Rep: 40S ribosomal protein S3 -
Encephalitozoon cuniculi
Length = 228
Score = 141 bits (342), Expect = 2e-32
Identities = 64/157 (40%), Positives = 99/157 (63%)
Frame = -3
Query: 738 DGVFKAELNEFLTRELAEDGYXXRXXPVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVV 559
+G+ AEL EF + L +G+ + +II+ + +GEK R+R+ +
Sbjct: 25 NGLMNAELKEFFEKALVNEGFSTMELRMQETPIKIILKVAKPHEAIGEKKFRLRQFQHLA 84
Query: 558 QKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARG 379
+R +P++SVE+ EKV +GLCA+ QA +R K++GG+ RRA L+ + A+G
Sbjct: 85 AQRLEVPDESVEIVVEKVHEKGLCALIQANFIREKILGGVQYRRAVNMALKTARHAKAQG 144
Query: 378 CEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNT 268
C+++VSGKL+GQRAKS+KF DG++IHSGD DY+NT
Sbjct: 145 CQIIVSGKLKGQRAKSVKFQDGVLIHSGDAVKDYINT 181
Score = 49.2 bits (112), Expect = 1e-04
Identities = 20/37 (54%), Positives = 27/37 (72%)
Frame = -1
Query: 242 QGVLGIKVKIMLPWDQQGKNGPKKPQPDHILVTEPKD 132
QGV+GI+V+IMLP+D +G GP P PD I + EP +
Sbjct: 190 QGVIGIQVRIMLPYDPEGVLGPNYPLPDRITILEPSE 226
>UniRef50_Q7QNT9 Cluster: GLP_157_11435_12088; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_157_11435_12088 - Giardia lamblia
ATCC 50803
Length = 217
Score = 119 bits (287), Expect = 7e-26
Identities = 61/176 (34%), Positives = 101/176 (57%)
Frame = -3
Query: 771 EQXFKEAKIGGDGVFKAELNEFLTRELAEDGYXXRXXPVTPIRSEIIIMATRTQSVLGEK 592
E+ +K D + +AEL+EF +REL + GY T +II + V+G+
Sbjct: 9 EENVYYSKYLNDCIMEAELHEFFSRELVDAGYASCSLCRTIDSICVIIQCAEPEVVMGDN 68
Query: 591 GRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGV 412
R+ ++ ++ RF ++ ++ +K+ RGL A ++LR KL + +RRA Y +
Sbjct: 69 HYRLHKIEYLLAGRFMCDPKNFNIWVDKIIKRGLSAEIMVDNLRAKLEEAMPIRRAAYSI 128
Query: 411 LRFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLR 244
+R M +GA GCEV+V+GKLR QRA++ KF +G +I +G P ++ ATRH+ +R
Sbjct: 129 IRTAMRAGAAGCEVIVAGKLRAQRARANKFKEGCLISTGHPKRIFLAEATRHIKMR 184
>UniRef50_Q8U004 Cluster: 30S ribosomal protein S3P; n=5;
Euryarchaeota|Rep: 30S ribosomal protein S3P -
Pyrococcus furiosus
Length = 210
Score = 113 bits (273), Expect = 4e-24
Identities = 62/158 (39%), Positives = 90/158 (56%)
Frame = -3
Query: 717 LNEFLTRELAEDGYXXRXXPVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIP 538
++EFL +EL GY TP+ +++II A V+G GRRIRELT +++K+F +
Sbjct: 17 IDEFLEKELRRAGYGGLDIKKTPLGTKVIIFAANPGYVIGRGGRRIRELTRILEKQFGLE 76
Query: 537 EQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSG 358
+E+ E++ L A QA L L G+ RRA Y LR IM +GARG E+ +SG
Sbjct: 77 NPQIEV--EEIKNPYLNAKVQAVRLAQALERGIHFRRAAYAALRAIMNNGARGVEIRLSG 134
Query: 357 KLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLR 244
KL G+RAKS++F G + G+P V+ LL+
Sbjct: 135 KLTGERAKSIRFYQGYLAKVGNPAETLVSKGYAQALLK 172
>UniRef50_Q8TRU1 Cluster: 30S ribosomal protein S3P; n=8;
Euryarchaeota|Rep: 30S ribosomal protein S3P -
Methanosarcina acetivorans
Length = 318
Score = 106 bits (254), Expect = 7e-22
Identities = 57/162 (35%), Positives = 92/162 (56%)
Frame = -3
Query: 756 EAKIGGDGVFKAELNEFLTRELAEDGYXXRXXPVTPIRSEIIIMATRTQSVLGEKGRRIR 577
E K DG KA ++E+ +L+ GY TP+ ++I+I + + V+G+ G+ IR
Sbjct: 4 EKKFVNDGYVKASMDEYFAEQLSRAGYGGMELNRTPMGTQIVIYSEKPGMVIGKAGKVIR 63
Query: 576 ELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIM 397
+LT V ++++ ++ A++V L A A L + G R+A + LR +M
Sbjct: 64 KLTRDVANKYSLENPQID--AQEVKRPELNAQMMASRLAASIERGWYFRKAGHNTLRAVM 121
Query: 396 ESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVN 271
+GA GCEVV+SGKL G R++ KFVDG + HSG+P + V+
Sbjct: 122 NAGALGCEVVISGKLTGARSRVEKFVDGYIKHSGNPVEEVVD 163
>UniRef50_Q01BA3 Cluster: Putative ribosomal protein; n=1;
Ostreococcus tauri|Rep: Putative ribosomal protein -
Ostreococcus tauri
Length = 145
Score = 103 bits (248), Expect = 4e-21
Identities = 48/64 (75%), Positives = 54/64 (84%)
Frame = -3
Query: 435 VRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRH 256
VR ACYGVLR+IMESGA+G EVVVSGKLRGQRAK+MKF DG MI SG+P DY+ + TRH
Sbjct: 30 VRSACYGVLRYIMESGAKGAEVVVSGKLRGQRAKAMKFKDGYMISSGNPVRDYIVSCTRH 89
Query: 255 VLLR 244
LLR
Sbjct: 90 ALLR 93
Score = 46.0 bits (104), Expect = 0.001
Identities = 18/44 (40%), Positives = 30/44 (68%)
Frame = -1
Query: 242 QGVLGIKVKIMLPWDQQGKNGPKKPQPDHILVTEPKDEPVPLEP 111
QG +G++VKIML D +G++GP P PD +++ PK++ +P
Sbjct: 94 QGTIGMRVKIMLDHDPKGRDGPSTPIPDTVVIHTPKEDEDMAKP 137
>UniRef50_A3CT03 Cluster: 30S ribosomal protein S3P; n=4;
Archaea|Rep: 30S ribosomal protein S3P - Methanoculleus
marisnigri (strain ATCC 35101 / DSM 1498 / JR1)
Length = 234
Score = 103 bits (247), Expect = 5e-21
Identities = 58/161 (36%), Positives = 88/161 (54%)
Frame = -3
Query: 756 EAKIGGDGVFKAELNEFLTRELAEDGYXXRXXPVTPIRSEIIIMATRTQSVLGEKGRRIR 577
E K DGV + +FLT+EL GY TP+ +++ I A + V+G+ G+++R
Sbjct: 4 EKKFITDGVRNVRVEKFLTKELKRAGYGGMDIARTPLGTQVTIFAEKPGIVIGKGGKQVR 63
Query: 576 ELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIM 397
+LT + ++I VE+ ++V A AE L L G R+A +R IM
Sbjct: 64 QLTQDLATDYDIESPQVEV--QQVQNPNFNAQIMAERLANALERGWYFRKAGSSTIRRIM 121
Query: 396 ESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYV 274
ESGA GCEV+V+GKL G R+++ KF +G + H G+P V
Sbjct: 122 ESGALGCEVIVAGKLTGSRSRTQKFTEGYIKHCGEPSETIV 162
>UniRef50_A1RXG6 Cluster: 30S ribosomal protein S3P; n=2;
Thermofilum pendens Hrk 5|Rep: 30S ribosomal protein S3P
- Thermofilum pendens (strain Hrk 5)
Length = 202
Score = 99.1 bits (236), Expect = 1e-19
Identities = 58/169 (34%), Positives = 90/169 (53%)
Frame = -3
Query: 750 KIGGDGVFKAELNEFLTRELAEDGYXXRXXPVTPIRSEIIIMATRTQSVLGEKGRRIREL 571
K+ G+ LNE+L R+L Y TPI +++I+ A V+G KG I+ +
Sbjct: 7 KVISQGLQYMMLNEYLQRQLVRANYVHAQFFKTPIGTKVIVYAGVPGLVIGRKGANIKAI 66
Query: 570 TSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMES 391
V+++ F I +++ +V + L A A + L+ G+ RRA L IM +
Sbjct: 67 AEVLEREFGIENPQIDVV--EVPNQDLNAKIMAYRVARALVRGVRFRRAALVALNRIMAA 124
Query: 390 GARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLR 244
GARG E+V+SGKL QR ++ KF G + SG+P + V+ A HVLL+
Sbjct: 125 GARGAEIVISGKLTSQRHRTEKFTRGYVPKSGEPGEELVDEAIVHVLLK 173
>UniRef50_Q8TX35 Cluster: 30S ribosomal protein S3P; n=1;
Methanopyrus kandleri|Rep: 30S ribosomal protein S3P -
Methanopyrus kandleri
Length = 227
Score = 97.5 bits (232), Expect = 3e-19
Identities = 54/154 (35%), Positives = 86/154 (55%)
Frame = -3
Query: 735 GVFKAELNEFLTRELAEDGYXXRXXPVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQ 556
G+ K EL+E+L EL GY P ++II R +G +GR IR + VQ
Sbjct: 18 GMLKTELDEYLEEELGRAGYGGMRLQRVPNATKIIAYVERPAIAIGRRGRNIRRVEEEVQ 77
Query: 555 KRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGC 376
+RF + + V + +++ + L A L L G+ RRA YG LR IM +GA+G
Sbjct: 78 ERFPLLGR-VSIEVKELPSPELNPRVVARRLASALERGIHFRRAAYGALRRIMNAGAKGA 136
Query: 375 EVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYV 274
+++SGKL G RA++ KF++G + + G+P ++Y+
Sbjct: 137 MIILSGKLIGARARTEKFMEGAVKYCGEPGDEYM 170
>UniRef50_P20281 Cluster: 30S ribosomal protein S3P; n=5;
Halobacteriaceae|Rep: 30S ribosomal protein S3P -
Haloarcula marismortui (Halobacterium marismortui)
Length = 304
Score = 97.5 bits (232), Expect = 3e-19
Identities = 52/157 (33%), Positives = 92/157 (58%)
Frame = -3
Query: 738 DGVFKAELNEFLTRELAEDGYXXRXXPVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVV 559
DG+ + +++EF EL GY TP+ ++I++ A + V+G+ G+ IR++T+ +
Sbjct: 10 DGLQRTQIDEFFAEELGRAGYGGMDVAKTPMGTQIVLKAEKPGMVIGKGGKNIRKITTEL 69
Query: 558 QKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARG 379
+ RFN+ + V++ ++V L A A+ L L G R+A + + IMESGA G
Sbjct: 70 EDRFNLDDPQVDV--QEVDEPDLNARIVADRLANALERGWYFRKAGHTTIDRIMESGALG 127
Query: 378 CEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNT 268
E+V+SGK+ G R++ KF G + H+G+P + V++
Sbjct: 128 AEIVLSGKVTGARSRVEKFNRGYVKHNGEPAEEIVDS 164
>UniRef50_UPI00015BB204 Cluster: SSU ribosomal protein S3P; n=1;
Ignicoccus hospitalis KIN4/I|Rep: SSU ribosomal protein
S3P - Ignicoccus hospitalis KIN4/I
Length = 241
Score = 97.1 bits (231), Expect = 5e-19
Identities = 61/185 (32%), Positives = 99/185 (53%)
Frame = -3
Query: 726 KAELNEFLTRELAEDGYXXRXXPVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRF 547
+ +++E+L + GY TP+ + +II A R+ +++G +G+ I+++T V+++ F
Sbjct: 19 QVKVDEYLAYKFHSVGYSKVELQKTPMGTRVIIYAERSGAIIGRRGQTIKQITKVLEEWF 78
Query: 546 NIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVV 367
IP V + KV L A A L L G RRA Y LR IM +GA G +V
Sbjct: 79 GIPNPQVTVV--KVEEPELDARVMAFRLANALQRGFHFRRAAYTTLRRIMGAGAIGAQVK 136
Query: 366 VSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRXRSTRNQGQNHVAVGPARQ 187
VSGKLRG+RA+ K++ G + SG+ + A HVLL+ +G + + +
Sbjct: 137 VSGKLRGERARFEKYIAGKVYKSGNQVVRLTDRAIAHVLLK---VGVEGVEVIISKKSEE 193
Query: 186 ERPEE 172
ERP++
Sbjct: 194 ERPDD 198
>UniRef50_O26116 Cluster: 30S ribosomal protein S3P; n=3;
Methanobacteriaceae|Rep: 30S ribosomal protein S3P -
Methanobacterium thermoautotrophicum
Length = 258
Score = 95.1 bits (226), Expect = 2e-18
Identities = 51/165 (30%), Positives = 88/165 (53%)
Frame = -3
Query: 738 DGVFKAELNEFLTRELAEDGYXXRXXPVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVV 559
+G+ + ++E+L +EL GY VTP+ + +++ A R V+G G+ +R +T +
Sbjct: 9 EGLRRTRIDEYLEKELERAGYGGMDVQVTPMGTMVVVYAERPGMVIGRGGKTVRAITQKL 68
Query: 558 QKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARG 379
+ +F++ VE+ ++V L A + L G+ RR Y +R IM +GA+G
Sbjct: 69 KNKFDLENPQVEV--KEVDVPELNPKIMAHKIAAMLQRGMHFRRVAYTTMRRIMAAGAQG 126
Query: 378 CEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLR 244
EV +SGK+RG R+ + KF DG + G+P +V V L+
Sbjct: 127 VEVTISGKIRGARSATAKFTDGYIKKCGEPSVKHVREGFATVQLK 171
>UniRef50_Q6LXE7 Cluster: 30S ribosomal protein S3P; n=5;
Methanococcus|Rep: 30S ribosomal protein S3P -
Methanococcus maripaludis
Length = 211
Score = 94.7 bits (225), Expect = 2e-18
Identities = 47/157 (29%), Positives = 83/157 (52%)
Frame = -3
Query: 741 GDGVFKAELNEFLTRELAEDGYXXRXXPVTPIRSEIIIMATRTQSVLGEKGRRIRELTSV 562
G+ V + ++E+ +L GY TPI + I + A + V+G KG+ ++ELT
Sbjct: 8 GENVSETLIDEYFKTKLVRAGYSHIDFKKTPIGTRITVFAEKPGFVIGRKGKMVKELTET 67
Query: 561 VQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGAR 382
+ +++ +E+ ++V L + L G+ R+ + +R +M SGA+
Sbjct: 68 LATEYSVKNPQIEV--KQVENPDLDPAVVGHKIASSLERGMHFRKTAHSAIRRVMGSGAK 125
Query: 381 GCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVN 271
G ++VSGKL G+R+++ KF+DG M H G+P VN
Sbjct: 126 GVAIIVSGKLSGERSRTEKFMDGYMKHCGEPAEALVN 162
>UniRef50_O28360 Cluster: 30S ribosomal protein S3P; n=1;
Archaeoglobus fulgidus|Rep: 30S ribosomal protein S3P -
Archaeoglobus fulgidus
Length = 229
Score = 86.6 bits (205), Expect = 6e-16
Identities = 55/161 (34%), Positives = 84/161 (52%)
Frame = -3
Query: 756 EAKIGGDGVFKAELNEFLTRELAEDGYXXRXXPVTPIRSEIIIMATRTQSVLGEKGRRIR 577
E K + + K + E++ E+ G+ TP+ +++ + R V+G+ GRRI+
Sbjct: 4 ERKFVQERLKKLMVKEWIKDEVRSAGFGGVDILRTPLGTQVTLFVERPGLVIGKGGRRIK 63
Query: 576 ELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIM 397
LT + K F I V + ++V A A L L G RRA Y L IM
Sbjct: 64 ALTEKL-KDFGIENPQVSV--DEVEKPEFNAQLMASLLARALERGWYFRRAGYRFLYRIM 120
Query: 396 ESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYV 274
E+GA+GCE+ +SGKL +RA++ KFV G ++H+GDP V
Sbjct: 121 EAGAKGCEIEISGKLVSERARTEKFVAGTIVHTGDPAESMV 161
>UniRef50_Q8ZWI0 Cluster: 30S ribosomal protein S3P; n=6;
Pyrobaculum|Rep: 30S ribosomal protein S3P - Pyrobaculum
aerophilum
Length = 218
Score = 80.6 bits (190), Expect = 4e-14
Identities = 45/159 (28%), Positives = 81/159 (50%), Gaps = 1/159 (0%)
Frame = -3
Query: 717 LNEFLTRELAEDGYXXRXXPVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIP 538
+ EFL L++ GY TP+ + I+I A R ++G KG ++E+++++ + +
Sbjct: 24 IKEFLEYRLSKYGYIDSEILKTPLGTRIVIYAERPSRIIGRKGAIVKEISNILTTKLGVE 83
Query: 537 EQSVELY-AEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVS 361
+++ K+ + A + + G+ RR + +R +ME+GA+G E+VVS
Sbjct: 84 NPQIDVIDISKIEAPEMFPKVVAYRIANAMAKGVRFRRVMFVAIRQLMEAGAKGFEIVVS 143
Query: 360 GKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLR 244
GKL +RA+ K G + G + V A HVLL+
Sbjct: 144 GKLSTERARFEKQTYGKLYKIGYDAKNRVRRAVVHVLLK 182
>UniRef50_Q9UXA0 Cluster: 30S ribosomal protein S3P; n=2;
Thermoprotei|Rep: 30S ribosomal protein S3P - Sulfolobus
solfataricus
Length = 229
Score = 79.8 bits (188), Expect = 7e-14
Identities = 47/163 (28%), Positives = 80/163 (49%)
Frame = -3
Query: 732 VFKAELNEFLTRELAEDGYXXRXXPVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQK 553
+ K +++E+L ++ Y TPI + +II A R ++G GR I++L + +K
Sbjct: 13 IVKVKIDEYLAKQYYNAEYAGVEVLKTPIGTRVIIYAGRPSMIIGRGGRNIKQLAQIFEK 72
Query: 552 RFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCE 373
F + + + V L A A L L G RRA + +R IM +GA G E
Sbjct: 73 VFGLENPQITI--TNVENPELNARVMAFRLAIALEKGYHFRRAAFISMRRIMNAGALGAE 130
Query: 372 VVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLR 244
+++SGKL +RA+ K +G++ SG ++ A +L+
Sbjct: 131 IIISGKLTTERARYEKLKEGIVYKSGQQLEKMIDRAIAIAMLK 173
>UniRef50_Q4JB46 Cluster: 30S ribosomal protein S3P; n=3;
Sulfolobaceae|Rep: 30S ribosomal protein S3P -
Sulfolobus acidocaldarius
Length = 231
Score = 79.8 bits (188), Expect = 7e-14
Identities = 51/161 (31%), Positives = 80/161 (49%)
Frame = -3
Query: 726 KAELNEFLTRELAEDGYXXRXXPVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRF 547
K ++E+L ++ Y TPI + +II A R ++G+ G+ I++L V++K F
Sbjct: 15 KVMVDEYLAKQFYNAEYAGVEIVKTPIGTRVIIYAGRPPLIIGKGGKTIKQLAQVLEKFF 74
Query: 546 NIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVV 367
+ + + A + L A A L L G RRA + +R IM SGA G EV+
Sbjct: 75 GLENPQITVTAAE--NPELNARVMAFRLAIALEKGYHFRRAAFITIRRIMSSGAVGAEVI 132
Query: 366 VSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLR 244
VSGKL +RAK K +G + SG ++ A +L+
Sbjct: 133 VSGKLTSERAKYEKLKEGTVYKSGQQLEKIIDRAIGIAMLK 173
>UniRef50_A5DF25 Cluster: Putative uncharacterized protein; n=1;
Pichia guilliermondii|Rep: Putative uncharacterized
protein - Pichia guilliermondii (Yeast) (Candida
guilliermondii)
Length = 278
Score = 77.4 bits (182), Expect = 4e-13
Identities = 46/169 (27%), Positives = 84/169 (49%)
Frame = +1
Query: 250 KHMSGSSVDVVIARVSRVDHESIYKLH*FGTLTTQLARYNNFTTTGARFHDETENTIAST 429
+H+S +V+ V+ ++RVDHE++ L G+ ++Q +N T H ++++T+ +
Sbjct: 95 QHVSDGNVNKVVGWLTRVDHETVRVLLRLGSSSSQFTGDDNLHTLSTSSHGKSQHTVGGS 154
Query: 430 TYSETSDKLVS*RFGLGDSAKTTSSHLFSIQFYRLLWNVESLLYYGSQLTDSASFLSEHT 609
++ +T +L FGL S +T+ + +ESL G QL DS S S++T
Sbjct: 155 SHWQTVQQLGFQGFGLDSSGQTSLLDSLGVDDNSFRRQLESLDNQGGQLVDSTSLFSQNT 214
Query: 610 LCPGGHNNDLRADGSDRXXTPXVXVLGQLPSEELIEFRLENSISTNFRF 756
L G +N+L+ V + Q EE ++ +E++IS F
Sbjct: 215 LGVGSLDNNLQLGWGLSDLNTGVTLFSQFSGEEFVQLGVEDTISYQLSF 263
>UniRef50_A3DNB3 Cluster: 30S ribosomal protein S3P; n=1;
Staphylothermus marinus F1|Rep: 30S ribosomal protein
S3P - Staphylothermus marinus (strain ATCC 43588 / DSM
3639 / F1)
Length = 224
Score = 75.4 bits (177), Expect = 2e-12
Identities = 49/161 (30%), Positives = 78/161 (48%)
Frame = -3
Query: 726 KAELNEFLTRELAEDGYXXRXXPVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRF 547
K L+EFL + GY TP ++I A ++G G IR+L +++Q F
Sbjct: 17 KVMLDEFLANYFKDAGYAGMELYKTPTGYRVVIYAEYPGRIIGRGGSIIRKLMTIMQTHF 76
Query: 546 NIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVV 367
+ ++V + V L A A + L + RR +LR +ME+GA G E++
Sbjct: 77 GL--ENVNITVSPVPDPDLNARIVAFRIVRALEKEIPYRRVAMAMLRRVMEAGAVGAEII 134
Query: 366 VSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLR 244
+SGKLR +RA+ K G + +GD + V+ A LL+
Sbjct: 135 ISGKLRSERARYEKLKAGRIYKAGDMVDYVVDRAVGKALLK 175
>UniRef50_A3H696 Cluster: Ribosomal protein S3-like; n=1; Caldivirga
maquilingensis IC-167|Rep: Ribosomal protein S3-like -
Caldivirga maquilingensis IC-167
Length = 226
Score = 74.5 bits (175), Expect = 3e-12
Identities = 43/169 (25%), Positives = 84/169 (49%)
Frame = -3
Query: 750 KIGGDGVFKAELNEFLTRELAEDGYXXRXXPVTPIRSEIIIMATRTQSVLGEKGRRIREL 571
+I D K + E+L L + Y T + + I+I+A + ++G KG++++ L
Sbjct: 4 RIIDDNKKKWMIKEYLNIALTRNRYVDSIIQRTTLGTRIVIIAEKKNRIIGRKGQQVKAL 63
Query: 570 TSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMES 391
+++ +FN+ +++ E +A + + G+ RRA LR + E+
Sbjct: 64 ADILKSKFNLDNVVIDVIQEPHPEYNARLVALR--IADAMAKGIRFRRAAIIALRQLQEA 121
Query: 390 GARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLR 244
+G EV++SGKL +R++ K+ G++I +G + V A VLL+
Sbjct: 122 NVQGAEVIISGKLTTERSRFEKYTTGIVIKAGQDALEKVQEAVIPVLLK 170
>UniRef50_UPI00005A35DE Cluster: PREDICTED: similar to 40S ribosomal
protein S3; n=1; Canis lupus familiaris|Rep: PREDICTED:
similar to 40S ribosomal protein S3 - Canis familiaris
Length = 161
Score = 73.7 bits (173), Expect = 5e-12
Identities = 35/53 (66%), Positives = 41/53 (77%)
Frame = -3
Query: 402 IMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLR 244
+ ESGA+G E +VSGKL+GQRAKS KFVD MIHS D N YV+T+ HVLLR
Sbjct: 80 VQESGAKGYEAMVSGKLQGQRAKSAKFVDDSMIHSRDCVNHYVDTSVHHVLLR 132
Score = 72.5 bits (170), Expect = 1e-11
Identities = 36/59 (61%), Positives = 43/59 (72%)
Frame = -3
Query: 768 QXFKEAKIGGDGVFKAELNEFLTRELAEDGYXXRXXPVTPIRSEIIIMATRTQSVLGEK 592
Q K+ + DG+F+AELNEFLTRELAEDG VTP + EIII+ TRTQ+VLGEK
Sbjct: 4 QTSKKRQFVADGIFRAELNEFLTRELAEDGDSRVEVRVTPTKPEIIILTTRTQNVLGEK 62
>UniRef50_Q9HIR5 Cluster: 30S ribosomal protein S3P; n=4;
Thermoplasmatales|Rep: 30S ribosomal protein S3P -
Thermoplasma acidophilum
Length = 225
Score = 73.3 bits (172), Expect = 6e-12
Identities = 41/157 (26%), Positives = 81/157 (51%)
Frame = -3
Query: 759 KEAKIGGDGVFKAELNEFLTRELAEDGYXXRXXPVTPIRSEIIIMATRTQSVLGEKGRRI 580
KE K + V + + E++ +E G+ TP + I + R V+G +G ++
Sbjct: 2 KERKFINEAVKRLLVCEYVVKETENAGFGNMVMKRTPFGTNITLYVNRPGLVIGRRGSKV 61
Query: 579 RELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFI 400
+++T ++K++ I +E+ + V L A+ + L G + R+A L
Sbjct: 62 QQMTDTLEKKYGIETPQIEV--KDVKDPDLNPSVIAKKIALSLEKGWSYRKAGNTSLNRT 119
Query: 399 MESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDP 289
+++GA+G + +SGK+ G+RA+ KF+ G + +SG+P
Sbjct: 120 IQAGAKGVLIKISGKISGERARYQKFIYGNVKYSGEP 156
>UniRef50_A0RVX9 Cluster: 30S ribosomal protein S3P; n=2;
Thermoprotei|Rep: 30S ribosomal protein S3P -
Cenarchaeum symbiosum
Length = 261
Score = 69.3 bits (162), Expect = 1e-10
Identities = 60/220 (27%), Positives = 97/220 (44%), Gaps = 17/220 (7%)
Frame = -3
Query: 720 ELNEFLTRELAEDGYXXRXXPVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNI 541
+L EFL + + G+ P ++I + TR V+G KG IRELT ++K F++
Sbjct: 16 KLREFLRENIKDSGFSGVEVEKNPRGTKITLHVTRPGIVIGRKGVGIRELTERLEKDFDL 75
Query: 540 PEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIME-SGARGCEVVV 364
V++ +++ T L + + G A RRA ++ IME A G ++ +
Sbjct: 76 KSPQVDV--KEIETPELYPGVMCNRMASHIERGTAFRRATMWTIQQIMEKKDAMGVQITI 133
Query: 363 SGKLRGQRAKSMKFVDGLMIHSGD-----PCNDYVNTATRHVL--LRXRSTRN------- 226
SGKLRG R+ K G++ +G +D V+ T L +R R R
Sbjct: 134 SGKLRGDRSAFEKHTSGILPRAGHYADVIVLDDVVHVKTPMGLIGIRIRIARRDKFRKDF 193
Query: 225 --QGQNHVAVGPARQERPEEATTRPHPGDRAQGRARAPRA 112
+ + V P + + T P G A+ A AP+A
Sbjct: 194 EMKAEKDVVPAPKPEHHDVKDETDPSAGTEAKDGAAAPKA 233
>UniRef50_Q673S3 Cluster: Ribosomal protein S3; n=2; environmental
samples|Rep: Ribosomal protein S3 - uncultured marine
group II euryarchaeote DeepAnt-JyKC7
Length = 307
Score = 66.5 bits (155), Expect = 7e-10
Identities = 41/149 (27%), Positives = 73/149 (48%)
Frame = -3
Query: 717 LNEFLTRELAEDGYXXRXXPVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIP 538
+ E+L RE G+ TP +++ + A + V+G +G+ I EL ++ F +
Sbjct: 21 VREYLLRETERAGFGGLEFNRTPEGTKVTLSAEQVGRVIGRRGKVIHELQYRLKSDFKLE 80
Query: 537 EQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSG 358
+E+ ++ L A A L L G RRA + + IM++GARGC +++SG
Sbjct: 81 NPRLEV--NEIEEPRLNAQVMASRLASSLERGWFFRRAGHSTAQNIMDAGARGCLIILSG 138
Query: 357 KLRGQRAKSMKFVDGLMIHSGDPCNDYVN 271
K+ G R + KF G + G+ +++
Sbjct: 139 KISGPRHRVQKFQQGHIKFCGETALQFMD 167
>UniRef50_Q8LNX7 Cluster: Putative ribosomal protein S3; n=1; Zinnia
elegans|Rep: Putative ribosomal protein S3 - Zinnia
elegans (Zinnia)
Length = 143
Score = 56.0 bits (129), Expect = 1e-06
Identities = 24/36 (66%), Positives = 28/36 (77%)
Frame = -1
Query: 242 QGVLGIKVKIMLPWDQQGKNGPKKPQPDHILVTEPK 135
QGVLGIKVKIML WD GK GPK P PD++++ PK
Sbjct: 36 QGVLGIKVKIMLDWDPTGKLGPKTPLPDNVVIHMPK 71
Score = 52.0 bits (119), Expect = 2e-05
Identities = 22/34 (64%), Positives = 27/34 (79%)
Frame = -3
Query: 345 QRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLR 244
QRAKSMKF DG M+ SG P +Y+++A RHVLLR
Sbjct: 2 QRAKSMKFKDGYMVSSGQPVKEYIDSAVRHVLLR 35
>UniRef50_A7QEK7 Cluster: Chromosome chr17 scaffold_85, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr17 scaffold_85, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 514
Score = 55.6 bits (128), Expect = 1e-06
Identities = 28/45 (62%), Positives = 32/45 (71%)
Frame = -3
Query: 696 ELAEDGYXXRXXPVTPIRSEIIIMATRTQSVLGEKGRRIRELTSV 562
++ EDGY VTP+ EIII ATRTQ+ L EKGRRIRELT V
Sbjct: 406 DILEDGYSDVKVRVTPMGMEIIIRATRTQNALSEKGRRIRELTLV 450
Score = 34.3 bits (75), Expect = 3.6
Identities = 17/32 (53%), Positives = 21/32 (65%)
Frame = -3
Query: 696 ELAEDGYXXRXXPVTPIRSEIIIMATRTQSVL 601
++ EDGY VT +R EIII ATRTQ+ L
Sbjct: 281 DIPEDGYSDIKVKVTGMRMEIIIHATRTQNAL 312
>UniRef50_A7NXL5 Cluster: Chromosome chr5 scaffold_2, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr5 scaffold_2, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 149
Score = 55.6 bits (128), Expect = 1e-06
Identities = 28/45 (62%), Positives = 33/45 (73%)
Frame = -3
Query: 696 ELAEDGYXXRXXPVTPIRSEIIIMATRTQSVLGEKGRRIRELTSV 562
+++EDGY VTP+R EIII ATRTQ+ LGEK RRIREL V
Sbjct: 16 DISEDGYSGVQVRVTPMRMEIIIHATRTQNALGEKRRRIRELILV 60
>UniRef50_A5ATU8 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 286
Score = 55.6 bits (128), Expect = 1e-06
Identities = 27/46 (58%), Positives = 33/46 (71%)
Frame = -3
Query: 696 ELAEDGYXXRXXPVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVV 559
++ EDGY VTP+ EII+ ATRTQ+ L EKGRRIRELT V+
Sbjct: 139 DILEDGYSNVKVRVTPMGMEIIVRATRTQNALSEKGRRIRELTLVM 184
>UniRef50_Q9RXJ6 Cluster: 30S ribosomal protein S3; n=2;
Deinococcus|Rep: 30S ribosomal protein S3 - Deinococcus
radiodurans
Length = 249
Score = 53.6 bits (123), Expect = 6e-06
Identities = 51/209 (24%), Positives = 94/209 (44%), Gaps = 7/209 (3%)
Frame = -3
Query: 720 ELNEFLTRELAEDGYXXRXXPVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNI 541
++ + + ++LA G + +II A + V+G+ G I+EL +++ +
Sbjct: 38 QIRQLINKKLAAAGIARIEIERAGQQVNVIISAAKPGVVIGKGGESIKELRGDIERL--V 95
Query: 540 PEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVS 361
+V + ++ + A A + ++ A RRA + +MESGARG +V++S
Sbjct: 96 SAGTVAVNVAEIPNPNISAPLVALRIAEQIERRFAFRRAMKQAAQRVMESGARGVKVILS 155
Query: 360 GKLRG-QRAKSMKFVDG-LMIHSGDPCNDYVNTATRHVLLRXRSTRNQGQNHVAVGP--- 196
G+L G ++A++ K ++G + +H+ DY TA + N +G
Sbjct: 156 GRLGGAEQARTEKVLEGRVPLHTLRADIDY-GTALARTTYGILGIKVLVFNGEVIGGKTE 214
Query: 195 --ARQERPEEATTRPHPGDRAQGRARAPR 115
AR +R + RP GDR R R
Sbjct: 215 TFARPQRRDRDERRPEGGDRPARRRPTAR 243
>UniRef50_Q6KI49 Cluster: 30S ribosomal protein S3; n=9;
Mycoplasma|Rep: 30S ribosomal protein S3 - Mycoplasma
mobile
Length = 225
Score = 52.8 bits (121), Expect = 1e-05
Identities = 33/111 (29%), Positives = 55/111 (49%), Gaps = 1/111 (0%)
Frame = -3
Query: 636 IIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRY 457
+++ + + ++LG+ G I +LT +QK E + + + L AI AE +
Sbjct: 67 VLVHSAKPGAILGQNGENINKLTQDIQKLLRNKELKLNIEVVNIKNPDLNAIILAEQIAI 126
Query: 456 KLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRG-QRAKSMKFVDGLM 307
KL R A +R M+SGA+G + VSG+L G A+S + +G M
Sbjct: 127 KLENRAPFRVAQKFAIRNAMKSGAKGIKTQVSGRLNGVDMARSEGYSEGEM 177
>UniRef50_Q3LWD3 Cluster: Ribosomal protein S3; n=1; Bigelowiella
natans|Rep: Ribosomal protein S3 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 262
Score = 52.0 bits (119), Expect = 2e-05
Identities = 25/101 (24%), Positives = 51/101 (50%), Gaps = 1/101 (0%)
Frame = -3
Query: 567 SVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKL-IGGLAVRRACYGVLRFIMES 391
+++ F I +++ + + + + Q+ ++ + R + LRF++ S
Sbjct: 112 NIISHLFFINSNKLKILYKNYKSSNISTMTQSSRMKEAFNYTNKSFRSIIFNTLRFLINS 171
Query: 390 GARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNT 268
G RGC + + G R +R K+ KF GL+ HSG ND++++
Sbjct: 172 GVRGCMIKLKGVYRSKRTKTFKFRRGLISHSGIQNNDWIDS 212
>UniRef50_Q74MZ4 Cluster: 30S ribosomal protein S3P; n=2;
Nanoarchaeum equitans|Rep: 30S ribosomal protein S3P -
Nanoarchaeum equitans
Length = 230
Score = 50.0 bits (114), Expect = 7e-05
Identities = 36/121 (29%), Positives = 61/121 (50%), Gaps = 1/121 (0%)
Frame = -3
Query: 654 TPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQ 475
TPI + +II + R + + E R L +++ +F + + +E+ + L A
Sbjct: 40 TPIVNRVIIYSARPKMISEE---RKAHLAKLLELKFGLEKPVIEVLP--IENPNLDAHVI 94
Query: 474 AESLRYKLIGGL-AVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHS 298
AE L + + A RR L IM +GA G E+V++G+L GQR K+ +F G + +
Sbjct: 95 AERLAMGIERNIRAYRRLAQRYLETIMNAGAIGAEIVIAGRLSGQRGKTWRFKAGNLRKT 154
Query: 297 G 295
G
Sbjct: 155 G 155
>UniRef50_O83225 Cluster: 30S ribosomal protein S3; n=1; Treponema
pallidum|Rep: 30S ribosomal protein S3 - Treponema
pallidum
Length = 247
Score = 47.2 bits (107), Expect = 5e-04
Identities = 29/102 (28%), Positives = 54/102 (52%)
Frame = -3
Query: 651 PIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQA 472
P R +++ R V+G KG I ++ + VQKR N + V++ +++ L A A
Sbjct: 63 PQRVTVVMHTARPGVVIGAKGVNIEKIGAEVQKRLN---KKVQIKVKEIKRMELNAYLVA 119
Query: 471 ESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRG 346
+++ +L ++ R+ M+SGA+G ++ VSG+L G
Sbjct: 120 QNVARQLTARVSFRKCLRQACAGTMKSGAQGVKIRVSGRLGG 161
>UniRef50_Q7MTL9 Cluster: 30S ribosomal protein S3; n=19;
Bacteroidetes|Rep: 30S ribosomal protein S3 -
Porphyromonas gingivalis (Bacteroides gingivalis)
Length = 246
Score = 46.8 bits (106), Expect = 6e-04
Identities = 31/109 (28%), Positives = 57/109 (52%), Gaps = 1/109 (0%)
Frame = -3
Query: 636 IIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRY 457
I I R ++G+ G+ + +L +++ I ++ V++ ++ L A AE++
Sbjct: 65 ITICTARPGMIIGKAGQEVDKLKEELKR---ITKKDVQINIYEIRKPELDAAIVAENIAR 121
Query: 456 KLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRG-QRAKSMKFVDG 313
+L G +A RRA + M GA G ++ VSG+L G + A+S F +G
Sbjct: 122 QLEGKIAYRRAVKMAIASAMRMGAEGIKIQVSGRLNGAEMARSEMFKEG 170
>UniRef50_A5B260 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 414
Score = 44.8 bits (101), Expect = 0.003
Identities = 23/47 (48%), Positives = 31/47 (65%)
Frame = -3
Query: 696 ELAEDGYXXRXXPVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQ 556
++ EDGY VT + EIII AT+TQ+ L E GR++RELT V +
Sbjct: 238 DIPEDGYSDIKVKVTGMCMEIIIRATQTQNALIENGRKMRELTLVTR 284
>UniRef50_A6EHQ8 Cluster: 30S ribosomal protein S3; n=1; Pedobacter
sp. BAL39|Rep: 30S ribosomal protein S3 - Pedobacter sp.
BAL39
Length = 281
Score = 44.4 bits (100), Expect = 0.003
Identities = 33/150 (22%), Positives = 74/150 (49%), Gaps = 2/150 (1%)
Frame = -3
Query: 720 ELNEFLTRELAEDGYXXRXXPVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNI 541
++ ++L+ +A+ G T R + I R V+G+ G+ + ++ ++K +
Sbjct: 37 KIRKYLSARIAKGGVAKVVIERTLKRITVTIHTARPGIVIGKAGQEVDKIKEELKK---L 93
Query: 540 PEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVS 361
++ +++ ++ L A AE + +L ++ RRA + M GA G +++ S
Sbjct: 94 TKKEIQINIFEIKRPELDAQLVAEGVAKQLEARISFRRAMKSTIAATMRMGAEGIKIMTS 153
Query: 360 GKLRG-QRAKSMKFVDG-LMIHSGDPCNDY 277
G+L G + A+S ++ +G + +H+ DY
Sbjct: 154 GRLGGAEMARSEQYKEGRIPLHTFRADIDY 183
>UniRef50_P46772 Cluster: 30S ribosomal protein S3; n=5;
Thermotogaceae|Rep: 30S ribosomal protein S3 -
Thermotoga maritima
Length = 209
Score = 43.2 bits (97), Expect = 0.008
Identities = 28/100 (28%), Positives = 50/100 (50%)
Frame = -3
Query: 645 RSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAES 466
R I + R ++G KG I L ++++FN + V + E++ T L A AES
Sbjct: 63 RINITVKTARPGIIIGRKGSEITSLREELERKFN---RRVVINIEEIKTPELDAQLVAES 119
Query: 465 LRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRG 346
+ ++ + + A + M GA+G +V+V+G+L G
Sbjct: 120 IASRIEKRASYKVAMKRAIMNAMRKGAQGIKVMVAGRLGG 159
>UniRef50_Q7UN14 Cluster: 30S ribosomal protein S3; n=3;
Planctomycetaceae|Rep: 30S ribosomal protein S3 -
Rhodopirellula baltica
Length = 236
Score = 43.2 bits (97), Expect = 0.008
Identities = 34/130 (26%), Positives = 63/130 (48%), Gaps = 5/130 (3%)
Frame = -3
Query: 720 ELNEFLTRELAEDGYXXRXXPVTPI---RSEIIIM--ATRTQSVLGEKGRRIRELTSVVQ 556
++ EF+T+ + Y I R E+ +M R ++G+KG+ I L + +Q
Sbjct: 38 KIREFITKHPKKSQYKSAGIDRIEIERTRDEVRVMLYVARPGLIIGKKGQEIEILQAELQ 97
Query: 555 KRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGC 376
N+ + + L E+V L A AE + +L + RR +L M++GA+G
Sbjct: 98 ---NLVGRRINLKVEEVGRPELQAQLVAEDISQQLAKRSSFRRTMKRMLEQTMDAGAKGI 154
Query: 375 EVVVSGKLRG 346
++ ++G+L G
Sbjct: 155 KIQMAGRLGG 164
>UniRef50_Q12GW5 Cluster: 30S ribosomal protein S3; n=197;
Bacteria|Rep: 30S ribosomal protein S3 - Polaromonas sp.
(strain JS666 / ATCC BAA-500)
Length = 301
Score = 42.3 bits (95), Expect = 0.014
Identities = 52/193 (26%), Positives = 88/193 (45%), Gaps = 16/193 (8%)
Frame = -3
Query: 642 SEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESL 463
+ I I + R V+G+KG I L + ++ +P V + E+V + A A+S+
Sbjct: 64 ARITIFSARPGVVIGKKGEDIENLKKELSRQLGVP---VAVNIEEVRKPEIDAKLIADSI 120
Query: 462 RYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRG-QRAKSMKFVDG-LMIHSGDP 289
+L + RRA ++ M GA G +++ SG+L G + A+ + +G + +H+
Sbjct: 121 TQQLEKRIMFRRAMKRAMQNAMRLGALGIKIMSSGRLNGIEIARCEWYREGRVPLHTLRA 180
Query: 288 CNDYVNTATR--------HVLLRXRSTRNQGQNHVA---VGPARQERPEEATTR-PHPG- 148
DY + + V + T +G++ A P+ +ER R PG
Sbjct: 181 DIDYGTSEAKTTYGVIGVKVWVYKGDTLGRGESPGAKLDAAPSDEERKPRGPRRDARPGS 240
Query: 147 DRAQGR-ARAPRA 112
DR R ARAPRA
Sbjct: 241 DRPAPRGARAPRA 253
>UniRef50_A1KB21 Cluster: 30S ribosomal protein S3; n=67; cellular
organisms|Rep: 30S ribosomal protein S3 - Azoarcus sp.
(strain BH72)
Length = 260
Score = 42.3 bits (95), Expect = 0.014
Identities = 31/125 (24%), Positives = 58/125 (46%)
Frame = -3
Query: 720 ELNEFLTRELAEDGYXXRXXPVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNI 541
++ ++L + LA + + + + R V+G+KG I L +QK +
Sbjct: 38 KVRDYLKKRLAHASVGRVVIERPAKNARVTLFSARPGVVIGKKGEDIEALKRDLQKIVGV 97
Query: 540 PEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVS 361
P V + E+V + A A+S+ +L + RRA ++ M GA+G +++ S
Sbjct: 98 P---VHVNIEEVRKPEIDAKLIADSIAQQLEKRIMFRRAMKRAMQNAMRLGAQGIKIMSS 154
Query: 360 GKLRG 346
G+L G
Sbjct: 155 GRLNG 159
>UniRef50_Q8KAH8 Cluster: 30S ribosomal protein S3; n=10;
Chlorobiaceae|Rep: 30S ribosomal protein S3 - Chlorobium
tepidum
Length = 253
Score = 41.5 bits (93), Expect = 0.024
Identities = 43/169 (25%), Positives = 80/169 (47%), Gaps = 2/169 (1%)
Frame = -3
Query: 750 KIGGDGVFKAELNEFLTRELAEDGYXXRXXPVTPIRSEIIIMATRTQSVLGEKGRRIREL 571
KI D V + ++ L +E A G T +I I A R +++G KG I L
Sbjct: 32 KIKQDQVIRNYVHARLKKEKA--GIAKIVIERTTKHIKINIYAARPGAIVGHKGEEINNL 89
Query: 570 TSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMES 391
+ Q+ I + V++ +V + A E++ Y+L ++ RRA ++ M +
Sbjct: 90 S---QELTRITGKEVKIDVIEVIKPEIEAQLIGENIAYQLENRVSFRRAMKMAIQQAMRA 146
Query: 390 GARGCEVVVSGKLRG-QRAKSMKFVDG-LMIHSGDPCNDYVNTATRHVL 250
GA G + +G+L G + A++ ++ +G + +H+ DY + T H +
Sbjct: 147 GAEGVRIRCAGRLGGAEIARAEQYKEGKIPLHTLRANVDYA-SVTAHTI 194
>UniRef50_P46247 Cluster: 30S ribosomal protein S3; n=3;
Entomoplasmatales|Rep: 30S ribosomal protein S3 -
Mesoplasma florum (Acholeplasma florum)
Length = 241
Score = 39.1 bits (87), Expect = 0.13
Identities = 26/109 (23%), Positives = 52/109 (47%), Gaps = 1/109 (0%)
Frame = -3
Query: 636 IIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRY 457
+II R VLG++G+ + + + VQK VE+ +V A A +
Sbjct: 66 LIIRTARPAIVLGQEGKNVSNIATAVQKIAKDRNLKVEVKVIEVKNPDADATLVARWIGE 125
Query: 456 KLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRG-QRAKSMKFVDG 313
++ + R +R +++G +G + VSG+L G + A++ +++G
Sbjct: 126 QITNRASFRTVQKLAIRKALKAGVKGIKTSVSGRLGGVEMARTEGYIEG 174
>UniRef50_A6NXD5 Cluster: Putative uncharacterized protein; n=1;
Bacteroides capillosus ATCC 29799|Rep: Putative
uncharacterized protein - Bacteroides capillosus ATCC
29799
Length = 283
Score = 38.7 bits (86), Expect = 0.17
Identities = 38/150 (25%), Positives = 64/150 (42%), Gaps = 1/150 (0%)
Frame = -3
Query: 759 KEAKIGGDGVFKAELNEFLTRELAEDGYXXRXXPVTPIRSEIIIMATRTQSVLGEKGRRI 580
+ K+G V ++ +FL + G + I + R V+G+ G I
Sbjct: 25 RNEKVGDLLVEDKKIRDFLKKTQYGAGIPKIEIERDNAKVRIYLHCARPGVVIGKGGEAI 84
Query: 579 RELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFI 400
L ++K +SV L +V + A AE++ +L + RRA +
Sbjct: 85 EALRLQLEKMLG---KSVALNIVEVKNPDMDAQLIAENIAQQLEKRIGFRRAMKNAMGRA 141
Query: 399 MESGARGCEVVVSGKLRG-QRAKSMKFVDG 313
M GARG + VSG+L G + A++ + DG
Sbjct: 142 MRMGARGIKTQVSGRLGGAEIARTEHYHDG 171
>UniRef50_Q04G79 Cluster: 30S ribosomal protein S3; n=1; Oenococcus
oeni PSU-1|Rep: 30S ribosomal protein S3 - Oenococcus
oeni (strain BAA-331 / PSU-1)
Length = 267
Score = 38.3 bits (85), Expect = 0.22
Identities = 28/117 (23%), Positives = 52/117 (44%), Gaps = 4/117 (3%)
Frame = -3
Query: 651 PIRSEIIIMATRTQSVLGEKGRRIRELTSVVQK---RFNIPEQSVELYAEKVATRGLCAI 481
P R + I + V+G G + L S + K + + V + ++ L A
Sbjct: 62 PTRINLTIHTAKPGIVIGRGGADVERLRSELSKIVDTYKGQHKRVNINIVEIRKPDLNAH 121
Query: 480 AQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRG-QRAKSMKFVDG 313
+ + L +A RRA G ++ + +GA+G +VSG+L G A+ ++ +G
Sbjct: 122 LVGQQIAADLERRVAFRRAMRGAIQRVQRAGAKGVRTMVSGRLNGADIARKEQYTEG 178
>UniRef50_A0MNG0 Cluster: Putative uncharacterized protein; n=1;
Thermus phage phiYS40|Rep: Putative uncharacterized
protein - Thermus phage phiYS40
Length = 1014
Score = 37.9 bits (84), Expect = 0.30
Identities = 24/79 (30%), Positives = 40/79 (50%)
Frame = -3
Query: 732 VFKAELNEFLTRELAEDGYXXRXXPVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQK 553
+FK+E FL+R L+E Y ++ RS I R L +K + E+ + ++
Sbjct: 228 IFKSEREIFLSRTLSEF-YNESLNAISIARSNFIAQLNRVNESL-QKAQSPEEVARLQEE 285
Query: 552 RFNIPEQSVELYAEKVATR 496
RFN + +LYAE++ R
Sbjct: 286 RFNYLKSLTQLYAEELKIR 304
>UniRef50_A6R2L3 Cluster: Predicted protein; n=1; Ajellomyces
capsulatus NAm1|Rep: Predicted protein - Ajellomyces
capsulatus NAm1
Length = 151
Score = 37.9 bits (84), Expect = 0.30
Identities = 21/43 (48%), Positives = 24/43 (55%)
Frame = -3
Query: 759 KEAKIGGDGVFKAELNEFLTRELAEDGYXXRXXPVTPIRSEII 631
K K GVF A LN F RELAE+GY VTP ++II
Sbjct: 87 KRRKFVVGGVFYAGLNGFFLRELAEEGYSGVEVRVTPTGTDII 129
>UniRef50_UPI00015BD7E8 Cluster: UPI00015BD7E8 related cluster; n=1;
unknown|Rep: UPI00015BD7E8 UniRef100 entry - unknown
Length = 231
Score = 37.5 bits (83), Expect = 0.39
Identities = 26/109 (23%), Positives = 58/109 (53%), Gaps = 1/109 (0%)
Frame = -3
Query: 630 IMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKL 451
I++++ ++G KG + +L + +++ + + + L ++V L A AE + ++
Sbjct: 68 ILSSKPGIIIGRKGAEVDQLKNDLERI--VKNKDISLSVDEVRVPQLDAQLVAEDIALQI 125
Query: 450 IGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRG-QRAKSMKFVDGLM 307
++ RRA + ++SGA+G +V V G++ G A++ F+ G M
Sbjct: 126 ERRVSHRRAMKRAIDNAIKSGAKGIKVQVKGRIGGADLARAEWFLVGRM 174
>UniRef50_Q3ZZL8 Cluster: 30S ribosomal protein S3; n=18;
Bacteria|Rep: 30S ribosomal protein S3 - Dehalococcoides
sp. (strain CBDB1)
Length = 278
Score = 37.1 bits (82), Expect = 0.52
Identities = 24/97 (24%), Positives = 50/97 (51%)
Frame = -3
Query: 636 IIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRY 457
+ + R V+G G+R+ E+ ++ ++ + V+L +++ L A A S+
Sbjct: 66 VSVRTARPGIVIGRGGQRVDEMRHFLE---DLIGKKVQLNIVEISQAELDAFLVARSVAE 122
Query: 456 KLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRG 346
++ +A RRA + M++GA+G ++ SG+L G
Sbjct: 123 QIERRVAYRRAMKQAIFRSMQAGAKGIKICASGRLGG 159
>UniRef50_Q20F10 Cluster: Chloroplast 30S ribosomal protein S3; n=2;
Chlorophyta|Rep: Chloroplast 30S ribosomal protein S3 -
Oltmannsiellopsis viridis (Marine flagellate)
Length = 235
Score = 36.7 bits (81), Expect = 0.68
Identities = 39/142 (27%), Positives = 59/142 (41%), Gaps = 11/142 (7%)
Frame = -3
Query: 738 DGVFKAELNEFLTRELAEDGYXXRXXPVTPIRSEIIIMATRTQSVLGEKGR---RIRELT 568
D + ELN+ D + R T + E+ I TR ++G K + ++++L
Sbjct: 36 DHFLREELNKRFPNSGIIDLFIQRKVDRTQV--EVEIRTTRPGLLVGRKRQNCDKLKQLR 93
Query: 567 SVVQKRFN--------IPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGV 412
+Q N P V L V + AI AE L +L +A RRA V
Sbjct: 94 DELQVELNKFRAKNGVSPTAKVALQVTTVQNKSSEAIVIAEFLVNQLERRIAFRRALRRV 153
Query: 411 LRFIMESGARGCEVVVSGKLRG 346
L I +G ++ VSG+L G
Sbjct: 154 LSIIQRDRVQGAKIQVSGRLNG 175
>UniRef50_A5AUQ8 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 617
Score = 36.3 bits (80), Expect = 0.90
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Frame = -3
Query: 633 IIMATRTQSVLGEK-GRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRY 457
+I TRT S+ + ++IREL SV Q +I + + A A RGL A+ ES+R
Sbjct: 101 VIRQTRTLSMTSAQFPKKIRELQSVTQSYVSIDATTKDKAAALAAARGLGRNAKIESVRL 160
Query: 456 KLIGGLAVRRACYGVLRFIMESGARG 379
++ L + +C G+ M + + G
Sbjct: 161 PMLTVLKL-HSCEGITSASMAAISHG 185
>UniRef50_Q9XD30 Cluster: 30S ribosomal protein S3; n=4;
Leptospira|Rep: 30S ribosomal protein S3 - Leptospira
interrogans
Length = 225
Score = 35.9 bits (79), Expect = 1.2
Identities = 24/102 (23%), Positives = 45/102 (44%)
Frame = -3
Query: 651 PIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQA 472
P + + + + V+G+KG I + +++ + P + +K T C A
Sbjct: 60 PEKINVNLHTAKPGIVIGQKGANIEAVKKILKTMTDKPVNLNIIEVKKPETVAQCI---A 116
Query: 471 ESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRG 346
ES+ ++ RR LR M G G ++++SG+L G
Sbjct: 117 ESIALQIEQRQPFRRVMKQELRRAMRGGVEGIKILISGRLNG 158
>UniRef50_P56798 Cluster: Chloroplast 30S ribosomal protein S3;
n=78; Streptophyta|Rep: Chloroplast 30S ribosomal
protein S3 - Arabidopsis thaliana (Mouse-ear cress)
Length = 218
Score = 35.9 bits (79), Expect = 1.2
Identities = 21/107 (19%), Positives = 52/107 (48%)
Frame = -3
Query: 639 EIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLR 460
+III + ++ +K RR+ EL VQK N + + + +++ AE +
Sbjct: 73 QIIIYMGFPKLLIEDKPRRVEELQMNVQKELNCVNRKLNIAITRISNPYGDPNILAEFIA 132
Query: 459 YKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFV 319
+L ++ R+A + ++ +G +V ++G++ G+ ++++
Sbjct: 133 GQLKNRVSFRKAMKKAIELTEQANTKGIQVQIAGRIDGKEIARVEWI 179
>UniRef50_Q9AA22 Cluster: Putative uncharacterized protein; n=1;
Caulobacter vibrioides|Rep: Putative uncharacterized
protein - Caulobacter crescentus (Caulobacter
vibrioides)
Length = 1026
Score = 35.1 bits (77), Expect = 2.1
Identities = 15/31 (48%), Positives = 20/31 (64%)
Frame = +3
Query: 63 DRLRQRRGREGAHFAGRLEGHGLVLGLCHQD 155
DR R+ GR+GA GRL G GL +G+ H +
Sbjct: 491 DRRRRPAGRDGAPVIGRLAGGGLAIGVAHAE 521
>UniRef50_Q2JFH0 Cluster: 30S ribosomal protein S3; n=94;
Bacteria|Rep: 30S ribosomal protein S3 - Frankia sp.
(strain CcI3)
Length = 315
Score = 35.1 bits (77), Expect = 2.1
Identities = 29/133 (21%), Positives = 57/133 (42%)
Frame = -3
Query: 720 ELNEFLTRELAEDGYXXRXXPVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNI 541
++ + ++R + G T R + I R V+G +G + ++K +
Sbjct: 37 KIRKMMSRGMERAGISRVDIERTQGRLRVDIHTARPGIVIGRRGAEADRIRGDLEK---L 93
Query: 540 PEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVS 361
+ V+L +V + A A+ + +L ++ RRA ++ M+ GA+G V S
Sbjct: 94 TGKQVQLNILEVKNPEVDAQLVAQGVAEQLSSRVSFRRAMRKAMQTAMKGGAKGIRVQCS 153
Query: 360 GKLRGQRAKSMKF 322
G+L G +F
Sbjct: 154 GRLGGAEMSRSEF 166
>UniRef50_Q9U982 Cluster: Drosophila dodeca-satellite protein 1;
n=9; Endopterygota|Rep: Drosophila dodeca-satellite
protein 1 - Drosophila melanogaster (Fruit fly)
Length = 1301
Score = 34.7 bits (76), Expect = 2.8
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = -3
Query: 654 TPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLC-AIA 478
T ++ + + +LG+ G+R+RE+ V R NIP QS E +E + G IA
Sbjct: 167 TQASRQVTVPREHFRVILGKGGQRLREIERVTATRINIPSQSDE--SEFITIAGTKEGIA 224
Query: 477 QAE 469
QAE
Sbjct: 225 QAE 227
>UniRef50_UPI0000DA2268 Cluster: PREDICTED: hypothetical protein;
n=2; Rattus norvegicus|Rep: PREDICTED: hypothetical
protein - Rattus norvegicus
Length = 328
Score = 34.3 bits (75), Expect = 3.6
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = -2
Query: 478 PGRISKIQAYRRSRCTSCLLWCSPFHH 398
PGR +A RRSRC+ C W HH
Sbjct: 240 PGRDWSAEASRRSRCSRCCTWSGDIHH 266
>UniRef50_Q6ABZ1 Cluster: Serine/threonine kinase; n=1; Leifsonia
xyli subsp. xyli|Rep: Serine/threonine kinase -
Leifsonia xyli subsp. xyli
Length = 974
Score = 34.3 bits (75), Expect = 3.6
Identities = 16/37 (43%), Positives = 18/37 (48%)
Frame = -3
Query: 225 QGQNHVAVGPARQERPEEATTRPHPGDRAQGRARAPR 115
+G A G A + PE R H GD A G RAPR
Sbjct: 830 RGARDAAAGAAERHGPEWGPARDHGGDAAAGAVRAPR 866
>UniRef50_Q6A6N2 Cluster: 30S ribosomal protein S3; n=27;
Bacteria|Rep: 30S ribosomal protein S3 -
Propionibacterium acnes
Length = 269
Score = 34.3 bits (75), Expect = 3.6
Identities = 31/137 (22%), Positives = 59/137 (43%), Gaps = 1/137 (0%)
Frame = -3
Query: 720 ELNEFLTRELAEDGYXXRXXPVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNI 541
++ E+L + L G R I + A R V+G G + ++K +
Sbjct: 37 KIREWLHKNLERAGLSSIEIERRSERVTIFLYAARPGIVIGRNGAEAERVRGELEK---L 93
Query: 540 PEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVS 361
+ ++L +V + A A+ + +L +A RRA + M +GA G + S
Sbjct: 94 TGKQIQLNILEVKSPETDAQLVAQGIAEQLAARVAFRRAMRKAQQSAMNAGALGIRIKCS 153
Query: 360 GKLRG-QRAKSMKFVDG 313
G+L G + ++S + +G
Sbjct: 154 GRLGGAEMSRSEGYREG 170
>UniRef50_A4X2E1 Cluster: Phage integrase family protein; n=8;
Actinomycetales|Rep: Phage integrase family protein -
Salinispora tropica CNB-440
Length = 464
Score = 33.9 bits (74), Expect = 4.8
Identities = 43/151 (28%), Positives = 66/151 (43%), Gaps = 3/151 (1%)
Frame = -3
Query: 648 IRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAE 469
+R ++ A R V + +R L +R ++P V E VA RG A A
Sbjct: 131 LRDHLLPPAVRESEVPADLAPALRWL-----RRASLPLAEV---GETVAVRGALE-ALAV 181
Query: 468 SLRYKLIGGLAVRR---ACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHS 298
L + VRR Y L++ +E A V ++RGQRAK K +D ++ +
Sbjct: 182 RLDGRAAAATTVRRKRSVFYNALQYAVELDALPFNPVDKIRVRGQRAKIAKSIDRRVVIN 241
Query: 297 GDPCNDYVNTATRHVLLRXRSTRNQGQNHVA 205
G + + TA +V R R R +G+ VA
Sbjct: 242 GRQARELL-TAVSYVGERGRDGR-RGERLVA 270
>UniRef50_P0A4C3 Cluster: 30S ribosomal protein S3; n=39;
Bacteria|Rep: 30S ribosomal protein S3 - Streptococcus
pneumoniae
Length = 217
Score = 33.5 bits (73), Expect = 6.4
Identities = 27/124 (21%), Positives = 55/124 (44%)
Frame = -3
Query: 717 LNEFLTRELAEDGYXXRXXPVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIP 538
+ +F+ +ELA+ + + + + V+G+ G + L + + K +
Sbjct: 38 IRKFVQKELADAAVSTIEIERAVNKVNVSLHTAKPGMVIGKGGANVDALRAKLNK---LT 94
Query: 537 EQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSG 358
+ V + ++ L A E + +L +A RRA ++ M +GA+G + VSG
Sbjct: 95 GKQVHINIIEIKQPDLDAHLVGEGIARQLEQRVAFRRAQKQAIQRAMRAGAKGIKTQVSG 154
Query: 357 KLRG 346
+L G
Sbjct: 155 RLNG 158
>UniRef50_Q9XDW7 Cluster: PsbAa; n=1; Rhodopseudomonas
palustris|Rep: PsbAa - Rhodopseudomonas palustris
Length = 403
Score = 29.1 bits (62), Expect(2) = 7.2
Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Frame = -3
Query: 540 PEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGA--RGCEVV 367
P + L KVA L I A +LR +LI G V GV+ + + A RGCEV
Sbjct: 114 PRRLAALEGTKVAVHYLRGIDDALTLRPQLIEGHRVALVGGGVIGLEVAAAALSRGCEVT 173
Query: 366 V 364
+
Sbjct: 174 I 174
Score = 23.0 bits (47), Expect(2) = 7.2
Identities = 8/27 (29%), Positives = 15/27 (55%)
Frame = -3
Query: 384 RGCEVVVSGKLRGQRAKSMKFVDGLMI 304
RG ++ +L GQ+ S+ DG ++
Sbjct: 201 RGAAILCKAELSGQQTHSLTLADGRVV 227
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 715,639,471
Number of Sequences: 1657284
Number of extensions: 14903447
Number of successful extensions: 47304
Number of sequences better than 10.0: 67
Number of HSP's better than 10.0 without gapping: 44712
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47176
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 69143070360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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