Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_O20
         (803 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16G5.14c |rps3||40S ribosomal protein S3|Schizosaccharomyces...   255   5e-69
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ...    28   1.8  
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    27   4.1  
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    27   4.1  
SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|...    26   7.2  
SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces...    25   9.5  

>SPBC16G5.14c |rps3||40S ribosomal protein S3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 249

 Score =  255 bits (625), Expect = 5e-69
 Identities = 123/172 (71%), Positives = 140/172 (81%)
 Frame = -3

Query: 759 KEAKIGGDGVFKAELNEFLTRELAEDGYXXRXXPVTPIRSEIIIMATRTQSVLGEKGRRI 580
           K+ K   DGVF AELNEF TREL+E+GY      VTP RSEIII AT TQ VLGEKGRRI
Sbjct: 9   KKRKFVADGVFYAELNEFFTRELSEEGYSGCEVRVTPSRSEIIIRATHTQDVLGEKGRRI 68

Query: 579 RELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFI 400
           RELT++VQKRF   E +VELYAEKV  RGLCA+AQ ESLRYKL+ GLAVRRA YGVLR++
Sbjct: 69  RELTALVQKRFKFAENTVELYAEKVQNRGLCAVAQCESLRYKLLAGLAVRRAAYGVLRYV 128

Query: 399 MESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLR 244
           ME+GA+GCEVV+SGKLR  RAKSMKF DG MIHSG P  D++++ATRHVLLR
Sbjct: 129 MEAGAKGCEVVISGKLRAARAKSMKFADGFMIHSGQPAVDFIDSATRHVLLR 180



 Score = 42.3 bits (95), Expect = 8e-05
 Identities = 22/44 (50%), Positives = 29/44 (65%)
 Frame = -1

Query: 242 QGVLGIKVKIMLPWDQQGKNGPKKPQPDHILVTEPKDEPVPLEP 111
           QGVLG+KVKIMLP   + K   KK  PD ++V +PK+E    +P
Sbjct: 181 QGVLGVKVKIMLP---EPKTRQKKSLPDIVVVLDPKEEEPITKP 221


>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2111

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 15/52 (28%), Positives = 26/52 (50%)
 Frame = -3

Query: 411  LRFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRH 256
            + F ME   +  + ++  +L+     S K  D ++I  GD  ND + T+ RH
Sbjct: 1868 IHFAMEFLHKNTKSLLDSELKDGNYISAKGKDVIVIGGGDTGNDCLGTSVRH 1919


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 2685

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 12/44 (27%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
 Frame = -2

Query: 346  STCQINEVCR-WTHDPLWRPLQ*LRQHCYQTCASQXKEY*ESRS 218
            + C   + CR W   P W+ +  + Q+C+ T       Y + RS
Sbjct: 1420 TVCNRKKACRLWNFKPHWQVITRIPQYCHDTHYGVYDAYRDFRS 1463


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1217

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
 Frame = -3

Query: 627 MATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAI-AQAESLRYKL 451
           MATR Q       RR  E  + +QK +N  + ++EL  E+V   G   +  + +  RY +
Sbjct: 726 MATRIQRAWRSYVRRRSEAAACIQKLWNRNKVNMEL--ERVRNEGTKLLQGKKQRRRYSI 783

Query: 450 IG 445
           +G
Sbjct: 784 LG 785


>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1402

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = -3

Query: 354 LRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRXRSTRNQGQN 214
           LRG   ++ K+V G+++ +GD     +N+     L R R TRN   N
Sbjct: 409 LRGCVLRNTKWVIGVVVFTGDDTKIMLNSGA-PPLKRSRITRNLNWN 454


>SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 471

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 22/70 (31%), Positives = 28/70 (40%), Gaps = 2/70 (2%)
 Frame = +1

Query: 313 SIYKLH*FGTLTTQLARYNNFTTTGARFHDETENTIASTTYSETSDKLVS*RFGLG--DS 486
           S+Y    +   T+ LA+YN             E  I+ST  S      V  R  LG    
Sbjct: 296 SVYSTMAYAEATSNLAKYNTIAFGNCLDEKFEEEIISSTARSFFLGDEVKKRLLLGAYSL 355

Query: 487 AKTTSSHLFS 516
           A+  SS LFS
Sbjct: 356 ARMNSSDLFS 365


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,829,525
Number of Sequences: 5004
Number of extensions: 57021
Number of successful extensions: 136
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)