Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_T7_O20
(803 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1220 - 24966169-24966327,24966421-24966552,24966639-249666... 273 1e-73
05_02_0059 + 6230139-6230199,6231716-6232506,6233108-6233149 31 1.4
11_01_0278 - 2068800-2068826,2070001-2070442,2070702-2072047 30 2.5
02_05_0237 + 27095817-27097433 30 2.5
05_04_0322 + 20239793-20240127,20240176-20240728,20241317-202414... 29 3.3
02_05_1123 + 34275272-34275331,34275451-34275523,34275631-342757... 29 5.7
08_02_1338 - 26244928-26245159,26246420-26247374,26247921-26249187 28 10.0
08_01_0892 - 8778097-8778236,8778390-8778486,8778568-8778747,877... 28 10.0
08_01_0346 - 3063440-3064189 28 10.0
05_06_0254 - 26706830-26706943,26707063-26707193,26707330-267074... 28 10.0
01_07_0132 - 41298184-41298558,41298648-41298729,41298850-412989... 28 10.0
01_01_0908 + 7158172-7158356,7159436-7159866,7159953-7161061,716... 28 10.0
01_01_0213 + 1833221-1835062,1835429-1835558,1835726-1836411 28 10.0
>07_03_1220 -
24966169-24966327,24966421-24966552,24966639-24966693,
24967496-24967667,24967771-24967918,24968015-24968050
Length = 233
Score = 273 bits (669), Expect = 1e-73
Identities = 136/175 (77%), Positives = 147/175 (84%)
Frame = -3
Query: 768 QXFKEAKIGGDGVFKAELNEFLTRELAEDGYXXRXXPVTPIRSEIIIMATRTQSVLGEKG 589
Q K+ K DGVF AELNE LTRELAEDGY VTP+R+EIII ATRTQ+VLGEKG
Sbjct: 6 QISKKRKFVADGVFFAELNEMLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKG 65
Query: 588 RRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVL 409
RRIRELTSVVQKRFN PE VELYAEKV RGLCAIAQAESLRYKL+GGLAVRRACYGVL
Sbjct: 66 RRIRELTSVVQKRFNFPENGVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVL 125
Query: 408 RFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLR 244
RF+MESGA+GCEV+VSGKLR QRAKSMKF DG MI SG P N Y+++A RHVLLR
Sbjct: 126 RFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGYPVNLYIDSAVRHVLLR 180
Score = 58.8 bits (136), Expect = 5e-09
Identities = 28/49 (57%), Positives = 34/49 (69%), Gaps = 1/49 (2%)
Frame = -1
Query: 242 QGVLGIKVKIMLPWDQQGKNGPKKPQPDHILVTEPKDEPVPLEP-TSEV 99
QGVLGIKVKIML WD +GK GP P PD + + PKDE +P T+E+
Sbjct: 181 QGVLGIKVKIMLDWDPKGKQGPMTPLPDLVTIHAPKDEDEFSKPLTAEI 229
>05_02_0059 + 6230139-6230199,6231716-6232506,6233108-6233149
Length = 297
Score = 30.7 bits (66), Expect = 1.4
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = -3
Query: 189 QERPEEATTRPHPGDRAQGRARAPR 115
Q R + +T RP PG R++GR+R PR
Sbjct: 194 QLRSDYSTHRPPPGGRSRGRSRHPR 218
>11_01_0278 - 2068800-2068826,2070001-2070442,2070702-2072047
Length = 604
Score = 29.9 bits (64), Expect = 2.5
Identities = 16/49 (32%), Positives = 22/49 (44%)
Frame = -3
Query: 267 ATRHVLLRXRSTRNQGQNHVAVGPARQERPEEATTRPHPGDRAQGRARA 121
AT R S R G++ + P R+E + T RP PG + A A
Sbjct: 450 ATHFSAERTMSLRGGGESAGSDSPCRREEAKSRTPRPQPGSAGERSAAA 498
>02_05_0237 + 27095817-27097433
Length = 538
Score = 29.9 bits (64), Expect = 2.5
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +1
Query: 127 GSSLGSVTRMWSGCGFFGPFLPCWSHGNMILTLIPS 234
G+ L +V R GCG+FG + W G + L+PS
Sbjct: 152 GAHLPAVIRALVGCGWFG--IESWIGGRAVFLLLPS 185
>05_04_0322 +
20239793-20240127,20240176-20240728,20241317-20241425,
20244456-20244723,20244943-20245197,20245594-20246539
Length = 821
Score = 29.5 bits (63), Expect = 3.3
Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Frame = -2
Query: 508 GGYSWSLRYRPG-RISKIQAYRRSRCTSCLLWC 413
G SWS RY+ ISK Y RC C++ C
Sbjct: 665 GALSWSRRYQIAIGISKGLPYLHERCRDCIIHC 697
>02_05_1123 +
34275272-34275331,34275451-34275523,34275631-34275728,
34276012-34276153,34276261-34276361,34276633-34276716,
34276949-34277014,34277102-34277167,34277324-34277404,
34277489-34277566,34277687-34277848,34277936-34278011,
34278111-34278223,34278323-34278751
Length = 542
Score = 28.7 bits (61), Expect = 5.7
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = -1
Query: 242 QGVLGIKVKIMLPWDQQGKNGPKKPQPDHILVTEPKDEPVPLEPTSEV 99
Q VL I+ K ++ + P P P +EP+ EP P++ S V
Sbjct: 283 QAVLAIEYKRKPEDEESSSSAPLPPPPVSTSESEPEPEPEPVKEVSPV 330
>08_02_1338 - 26244928-26245159,26246420-26247374,26247921-26249187
Length = 817
Score = 27.9 bits (59), Expect = 10.0
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +3
Query: 54 DSGDRLRQRRGREGAHFAGRLEGHGLVLG 140
+ GD+ + +G EG +G GHG V+G
Sbjct: 164 EEGDKGMKVKGEEGCRASGSDSGHGCVIG 192
>08_01_0892 -
8778097-8778236,8778390-8778486,8778568-8778747,
8779138-8779247,8781153-8781294,8782298-8782686,
8782752-8782834,8783524-8785244,8785894-8786040,
8786121-8786264,8786669-8786741,8787413-8787633
Length = 1148
Score = 27.9 bits (59), Expect = 10.0
Identities = 15/69 (21%), Positives = 32/69 (46%)
Frame = +1
Query: 256 MSGSSVDVVIARVSRVDHESIYKLH*FGTLTTQLARYNNFTTTGARFHDETENTIASTTY 435
+ GS +++ V R D +++Y+ G ++ +NN +++G HD N I
Sbjct: 746 IDGSRDELLETDVIRQDIKALYQSIDMGLVSEATVCFNNVSSSGLSVHDTGGNVIGQGDQ 805
Query: 436 SETSDKLVS 462
++ +S
Sbjct: 806 DSEKNRYLS 814
>08_01_0346 - 3063440-3064189
Length = 249
Score = 27.9 bits (59), Expect = 10.0
Identities = 13/23 (56%), Positives = 14/23 (60%)
Frame = -3
Query: 474 AESLRYKLIGGLAVRRACYGVLR 406
A S L+GG A ACYGVLR
Sbjct: 221 ARSAARVLLGGWAAMAACYGVLR 243
>05_06_0254 -
26706830-26706943,26707063-26707193,26707330-26707417,
26707970-26708087,26708184-26708332,26708787-26708840,
26708963-26709031,26709146-26709246,26709391-26709473,
26709846-26710041,26710171-26710279
Length = 403
Score = 27.9 bits (59), Expect = 10.0
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = +1
Query: 142 SVTRMWSGCGFFGPFLPCWSH 204
S T M S CGF G CW+H
Sbjct: 211 SSTGMQSNCGFEGQVNACWTH 231
>01_07_0132 -
41298184-41298558,41298648-41298729,41298850-41298977,
41299059-41299157,41299279-41299434,41300709-41300783,
41301962-41302137,41303210-41303252,41303336-41303503,
41303584-41303731,41306316-41306587
Length = 573
Score = 27.9 bits (59), Expect = 10.0
Identities = 15/63 (23%), Positives = 30/63 (47%)
Frame = -3
Query: 438 AVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATR 259
A R A G++ + + G G SG+ RGQ +++ ++G + +Y++ A
Sbjct: 472 AARLAAAGIVGILKKLGRDGSGAASSGRGRGQPRRTVVAIEGGLYQGYPVFREYLDEALV 531
Query: 258 HVL 250
+L
Sbjct: 532 EIL 534
>01_01_0908 +
7158172-7158356,7159436-7159866,7159953-7161061,
7161372-7162820
Length = 1057
Score = 27.9 bits (59), Expect = 10.0
Identities = 18/59 (30%), Positives = 26/59 (44%)
Frame = -2
Query: 337 QINEVCRWTHDPLWRPLQ*LRQHCYQTCASQXKEY*ESRSKSCCRGTSKARTARRSHNQ 161
Q+ E C T DP +P+ Q C Q C +E RS R T K ++ H++
Sbjct: 296 QVAEQCNLTKDP--KPVS--GQKCEQICNEPCEEVVLKRSSKSKRKTDKKLMKKQQHSK 350
>01_01_0213 + 1833221-1835062,1835429-1835558,1835726-1836411
Length = 885
Score = 27.9 bits (59), Expect = 10.0
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = -1
Query: 179 PKKPQPDHILVTEPKDEPVPLEPTS 105
P+ +PD +LV P P PL P +
Sbjct: 129 PRADEPDVVLVLPPSQRPPPLSPAA 153
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,044,666
Number of Sequences: 37544
Number of extensions: 443448
Number of successful extensions: 1422
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1337
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1417
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2185924824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -