Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_T7_O20
(803 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_29492| Best HMM Match : Ribosomal_S3_C (HMM E-Value=1.8e-28) 292 2e-79
SB_1330| Best HMM Match : Phage_Coat_Gp8 (HMM E-Value=1.9) 36 0.051
SB_20734| Best HMM Match : Abi_HHR (HMM E-Value=3.59994e-42) 31 1.1
SB_28852| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_14482| Best HMM Match : Cornifin (HMM E-Value=3.7) 30 1.9
SB_27312| Best HMM Match : Pox_A32 (HMM E-Value=0.012) 30 2.5
SB_3270| Best HMM Match : MMPL (HMM E-Value=0.68) 29 4.4
SB_1988| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.4
SB_51602| Best HMM Match : Glyco_hydro_38C (HMM E-Value=1.1e-31) 29 4.4
SB_42203| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.4
SB_50664| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.8
SB_43553| Best HMM Match : Gp-FAR-1 (HMM E-Value=0.29) 29 5.8
SB_48415| Best HMM Match : Pox_A32 (HMM E-Value=0.014) 28 7.7
>SB_29492| Best HMM Match : Ribosomal_S3_C (HMM E-Value=1.8e-28)
Length = 240
Score = 292 bits (717), Expect = 2e-79
Identities = 144/175 (82%), Positives = 154/175 (88%)
Frame = -3
Query: 768 QXFKEAKIGGDGVFKAELNEFLTRELAEDGYXXRXXPVTPIRSEIIIMATRTQSVLGEKG 589
Q K+ K DG+FKAELNEFLTRELAEDGY VTPIR+EIII+ATRTQ+VLGEKG
Sbjct: 4 QISKKRKFVADGLFKAELNEFLTRELAEDGYSGVEVRVTPIRTEIIILATRTQNVLGEKG 63
Query: 588 RRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVL 409
RRIRELTSVVQKRF PE SVELYAEKVATRGLCAIAQ ESLRYKLIGGLAVRRACYGVL
Sbjct: 64 RRIRELTSVVQKRFGFPEGSVELYAEKVATRGLCAIAQCESLRYKLIGGLAVRRACYGVL 123
Query: 408 RFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLR 244
RFIMESGA+GCEVVVSGKLRGQRAKSMKFVDGLM+H+G+P YV+TA RHV LR
Sbjct: 124 RFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMVHAGEPTTHYVDTAVRHVYLR 178
Score = 81.8 bits (193), Expect = 6e-16
Identities = 35/47 (74%), Positives = 38/47 (80%)
Frame = -1
Query: 242 QGVLGIKVKIMLPWDQQGKNGPKKPQPDHILVTEPKDEPVPLEPTSE 102
QGVLGIKVKIMLPWD GK GPKKP PD + + EPKDE VP +PTSE
Sbjct: 179 QGVLGIKVKIMLPWDPTGKTGPKKPLPDQVSIVEPKDEVVPAQPTSE 225
>SB_1330| Best HMM Match : Phage_Coat_Gp8 (HMM E-Value=1.9)
Length = 482
Score = 35.5 bits (78), Expect = 0.051
Identities = 17/30 (56%), Positives = 17/30 (56%)
Frame = -3
Query: 210 VAVGPARQERPEEATTRPHPGDRAQGRARA 121
VA GPAR PE TRPHPG GR A
Sbjct: 107 VAAGPARITSPEPPATRPHPGRVEAGRRLA 136
>SB_20734| Best HMM Match : Abi_HHR (HMM E-Value=3.59994e-42)
Length = 426
Score = 31.1 bits (67), Expect = 1.1
Identities = 13/66 (19%), Positives = 32/66 (48%)
Frame = -3
Query: 354 LRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRXRSTRNQGQNHVAVGPARQERPE 175
L Q+ ++ ++ + + + N + R + +++N + H + PA+QE+PE
Sbjct: 123 LLDQQVSQLQTMESKINYISETVNIHKEKVARREIGVLATSKNTSRTHKIIAPAKQEKPE 182
Query: 174 EATTRP 157
+ +P
Sbjct: 183 RYSRKP 188
>SB_28852| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3172
Score = 30.3 bits (65), Expect = 1.9
Identities = 17/70 (24%), Positives = 33/70 (47%)
Frame = -3
Query: 681 GYXXRXXPVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVA 502
GY R + S +++ A +++ ++ + +RE +QKRF E+ +Y
Sbjct: 1941 GYTARKEYSRCVTSIVLMQALVRRNLAVKRYQALREAAIGIQKRFRAKEEGKLVYLMFHI 2000
Query: 501 TRGLCAIAQA 472
RG C + Q+
Sbjct: 2001 QRGACIVIQS 2010
>SB_14482| Best HMM Match : Cornifin (HMM E-Value=3.7)
Length = 301
Score = 30.3 bits (65), Expect = 1.9
Identities = 14/26 (53%), Positives = 14/26 (53%)
Frame = -3
Query: 198 PARQERPEEATTRPHPGDRAQGRARA 121
PAR PE TRPHPG GR A
Sbjct: 42 PARVTSPEPPATRPHPGRVEAGRRLA 67
>SB_27312| Best HMM Match : Pox_A32 (HMM E-Value=0.012)
Length = 1115
Score = 29.9 bits (64), Expect = 2.5
Identities = 14/26 (53%), Positives = 14/26 (53%)
Frame = -3
Query: 198 PARQERPEEATTRPHPGDRAQGRARA 121
PAR PE TRPHPG GR A
Sbjct: 537 PARITSPEPPATRPHPGRVEAGRRLA 562
>SB_3270| Best HMM Match : MMPL (HMM E-Value=0.68)
Length = 401
Score = 29.1 bits (62), Expect = 4.4
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = -2
Query: 361 WQAAWSTCQINEVCRWTHDPLW 296
W+ AW+ C + E +T++P W
Sbjct: 76 WKQAWTPCSLQETTIYTNNPPW 97
>SB_1988| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3889
Score = 29.1 bits (62), Expect = 4.4
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +3
Query: 45 ILSDSGDRLRQRRGREGAHFAGRLEGHGL 131
+LS +GD +R GRE HF + HGL
Sbjct: 769 VLSSNGDFIRSFGGRESMHFRYCVYSHGL 797
>SB_51602| Best HMM Match : Glyco_hydro_38C (HMM E-Value=1.1e-31)
Length = 976
Score = 29.1 bits (62), Expect = 4.4
Identities = 10/26 (38%), Positives = 12/26 (46%)
Frame = -2
Query: 367 CIWQAAWSTCQINEVCRWTHDPLWRP 290
C W + W + E WTH P RP
Sbjct: 185 CRWLSQWKQSEEEESVLWTHSPARRP 210
>SB_42203| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 228
Score = 29.1 bits (62), Expect = 4.4
Identities = 11/41 (26%), Positives = 19/41 (46%)
Frame = -2
Query: 502 YSWSLRYRPGRISKIQAYRRSRCTSCLLWCSPFHHGIWRPW 380
Y+W L + P + ++ Y R + L C+P + W W
Sbjct: 4 YNWWLAWNPALLCLMRQYNRWLAWNPALLCNPRQYNRWLAW 44
>SB_50664| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 173
Score = 28.7 bits (61), Expect = 5.8
Identities = 23/71 (32%), Positives = 36/71 (50%)
Frame = -2
Query: 367 CIWQAAWSTCQINEVCRWTHDPLWRPLQ*LRQHCYQTCASQXKEY*ESRSKSCCRGTSKA 188
C++ A WS C INE+ R H L+ L + Q+ SQ + SR KS + +
Sbjct: 10 CVF-ACWSNCLINEINRTNH------LE-LSGNIRQSVGSQSE---HSRDKSVTKTHNPG 58
Query: 187 RTARRSHNQTT 155
++ R+ N+TT
Sbjct: 59 GSSSRTKNKTT 69
>SB_43553| Best HMM Match : Gp-FAR-1 (HMM E-Value=0.29)
Length = 1851
Score = 28.7 bits (61), Expect = 5.8
Identities = 14/27 (51%), Positives = 14/27 (51%)
Frame = -3
Query: 207 AVGPARQERPEEATTRPHPGDRAQGRA 127
A AR PE TRPHPG GRA
Sbjct: 1497 AARDARITSPEPPATRPHPGRVEAGRA 1523
>SB_48415| Best HMM Match : Pox_A32 (HMM E-Value=0.014)
Length = 988
Score = 28.3 bits (60), Expect = 7.7
Identities = 17/42 (40%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Frame = -3
Query: 240 RSTRNQGQNHVAVGPA--RQERPEEATTRPHPGDRAQGRARA 121
+ R + VA PA R PE TRPHPG GR A
Sbjct: 801 KQRREPARTPVAALPAAARVTSPEPPATRPHPGRVEAGRRLA 842
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,435,507
Number of Sequences: 59808
Number of extensions: 478524
Number of successful extensions: 1484
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1343
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1480
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2227723674
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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