Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_T7_O20
(803 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U39851-9|AAF99870.1| 247|Caenorhabditis elegans Ribosomal prote... 266 1e-71
Z69302-1|CAA93264.1| 191|Caenorhabditis elegans Hypothetical pr... 30 2.2
AL034393-1|CAA22308.1| 1634|Caenorhabditis elegans Hypothetical ... 29 2.9
Z92827-3|CAB07328.1| 191|Caenorhabditis elegans Hypothetical pr... 28 6.8
Z81586-11|CAF31485.1| 1165|Caenorhabditis elegans Hypothetical p... 28 9.0
Z70686-12|CAB54289.1| 2584|Caenorhabditis elegans Hypothetical p... 28 9.0
Z70686-11|CAA94615.1| 2606|Caenorhabditis elegans Hypothetical p... 28 9.0
Z70686-8|CAM35837.1| 1427|Caenorhabditis elegans Hypothetical pr... 28 9.0
Z70686-7|CAM35836.1| 1405|Caenorhabditis elegans Hypothetical pr... 28 9.0
Z70310-9|CAB54294.1| 2584|Caenorhabditis elegans Hypothetical pr... 28 9.0
Z70310-8|CAA94370.1| 2606|Caenorhabditis elegans Hypothetical pr... 28 9.0
U58749-5|AAU05597.1| 1551|Caenorhabditis elegans Hypothetical pr... 28 9.0
U58749-4|AAU05598.1| 1592|Caenorhabditis elegans Hypothetical pr... 28 9.0
>U39851-9|AAF99870.1| 247|Caenorhabditis elegans Ribosomal protein,
small subunitprotein 3 protein.
Length = 247
Score = 266 bits (652), Expect = 1e-71
Identities = 131/172 (76%), Positives = 146/172 (84%)
Frame = -3
Query: 759 KEAKIGGDGVFKAELNEFLTRELAEDGYXXRXXPVTPIRSEIIIMATRTQSVLGEKGRRI 580
K+A IGG +FKAELN FL +ELAEDGY TP R+E+IIMATRTQ+VLGE+GRRI
Sbjct: 11 KKAVIGG--IFKAELNNFLMKELAEDGYSGVEVRSTPARAEVIIMATRTQNVLGERGRRI 68
Query: 579 RELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFI 400
+ELTSVVQKRF E SVELYAEKV+ RGLCA+AQ ESLRYKL+GGLAVRRACYGVLRFI
Sbjct: 69 KELTSVVQKRFGFEEGSVELYAEKVSNRGLCAVAQCESLRYKLVGGLAVRRACYGVLRFI 128
Query: 399 MESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLR 244
MESGA+G EV+VSGKLRGQRAK+MKFVDGLMIHSG P NDY+ A RHV LR
Sbjct: 129 MESGAQGVEVIVSGKLRGQRAKAMKFVDGLMIHSGHPVNDYIQQAVRHVQLR 180
Score = 68.1 bits (159), Expect = 7e-12
Identities = 27/47 (57%), Positives = 38/47 (80%)
Frame = -1
Query: 242 QGVLGIKVKIMLPWDQQGKNGPKKPQPDHILVTEPKDEPVPLEPTSE 102
QGV+GIKVKIMLP+D +G+NGP+ PDH+ + EP++E +P EP S+
Sbjct: 181 QGVIGIKVKIMLPYDPRGQNGPRNALPDHVQIVEPQEEVLPKEPHSQ 227
>Z69302-1|CAA93264.1| 191|Caenorhabditis elegans Hypothetical
protein F40F8.1 protein.
Length = 191
Score = 29.9 bits (64), Expect = 2.2
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +3
Query: 39 SYILSDSGDRLRQRRGREGAHFAGRLEGH 125
+Y+ +GD LR R REG+ F +E H
Sbjct: 27 NYVHLSAGDLLRAERQREGSEFGALIESH 55
>AL034393-1|CAA22308.1| 1634|Caenorhabditis elegans Hypothetical
protein Y18D10A.1 protein.
Length = 1634
Score = 29.5 bits (63), Expect = 2.9
Identities = 13/40 (32%), Positives = 25/40 (62%)
Frame = -3
Query: 615 TQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATR 496
+ S+ G+KG+ +REL + + K ++ E++ + AE A R
Sbjct: 396 SSSIHGKKGKTVRELQTEMMKGESVKEKAARMRAEASAGR 435
>Z92827-3|CAB07328.1| 191|Caenorhabditis elegans Hypothetical
protein C29F7.3 protein.
Length = 191
Score = 28.3 bits (60), Expect = 6.8
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +3
Query: 42 YILSDSGDRLRQRRGREGAHFAGRLEGH 125
Y+ +GD LR R R G+ + +EGH
Sbjct: 28 YVHLSAGDLLRAERERAGSEYGALIEGH 55
>Z81586-11|CAF31485.1| 1165|Caenorhabditis elegans Hypothetical
protein T05F1.6 protein.
Length = 1165
Score = 27.9 bits (59), Expect = 9.0
Identities = 17/53 (32%), Positives = 27/53 (50%)
Frame = -3
Query: 273 NTATRHVLLRXRSTRNQGQNHVAVGPARQERPEEATTRPHPGDRAQGRARAPR 115
++AT + RSTR +G+ A QE+ E T+ H ++A+ R PR
Sbjct: 419 SSATSSAVPTPRSTRGRGRKSQANEENLQEKETEDPTKTHDTNQAKS-TRTPR 470
>Z70686-12|CAB54289.1| 2584|Caenorhabditis elegans Hypothetical
protein R11A8.7b protein.
Length = 2584
Score = 27.9 bits (59), Expect = 9.0
Identities = 11/26 (42%), Positives = 18/26 (69%), Gaps = 3/26 (11%)
Frame = -1
Query: 170 PQPDHILVTEPKDEPVPL---EPTSE 102
P+P+ ++++EP EPVP+ EP E
Sbjct: 1647 PEPEPVVISEPVPEPVPIVVEEPPKE 1672
>Z70686-11|CAA94615.1| 2606|Caenorhabditis elegans Hypothetical
protein R11A8.7a protein.
Length = 2606
Score = 27.9 bits (59), Expect = 9.0
Identities = 11/26 (42%), Positives = 18/26 (69%), Gaps = 3/26 (11%)
Frame = -1
Query: 170 PQPDHILVTEPKDEPVPL---EPTSE 102
P+P+ ++++EP EPVP+ EP E
Sbjct: 1647 PEPEPVVISEPVPEPVPIVVEEPPKE 1672
>Z70686-8|CAM35837.1| 1427|Caenorhabditis elegans Hypothetical
protein R11A8.7d protein.
Length = 1427
Score = 27.9 bits (59), Expect = 9.0
Identities = 11/26 (42%), Positives = 18/26 (69%), Gaps = 3/26 (11%)
Frame = -1
Query: 170 PQPDHILVTEPKDEPVPL---EPTSE 102
P+P+ ++++EP EPVP+ EP E
Sbjct: 468 PEPEPVVISEPVPEPVPIVVEEPPKE 493
>Z70686-7|CAM35836.1| 1405|Caenorhabditis elegans Hypothetical
protein R11A8.7c protein.
Length = 1405
Score = 27.9 bits (59), Expect = 9.0
Identities = 11/26 (42%), Positives = 18/26 (69%), Gaps = 3/26 (11%)
Frame = -1
Query: 170 PQPDHILVTEPKDEPVPL---EPTSE 102
P+P+ ++++EP EPVP+ EP E
Sbjct: 468 PEPEPVVISEPVPEPVPIVVEEPPKE 493
>Z70310-9|CAB54294.1| 2584|Caenorhabditis elegans Hypothetical protein
R11A8.7b protein.
Length = 2584
Score = 27.9 bits (59), Expect = 9.0
Identities = 11/26 (42%), Positives = 18/26 (69%), Gaps = 3/26 (11%)
Frame = -1
Query: 170 PQPDHILVTEPKDEPVPL---EPTSE 102
P+P+ ++++EP EPVP+ EP E
Sbjct: 1647 PEPEPVVISEPVPEPVPIVVEEPPKE 1672
>Z70310-8|CAA94370.1| 2606|Caenorhabditis elegans Hypothetical protein
R11A8.7a protein.
Length = 2606
Score = 27.9 bits (59), Expect = 9.0
Identities = 11/26 (42%), Positives = 18/26 (69%), Gaps = 3/26 (11%)
Frame = -1
Query: 170 PQPDHILVTEPKDEPVPL---EPTSE 102
P+P+ ++++EP EPVP+ EP E
Sbjct: 1647 PEPEPVVISEPVPEPVPIVVEEPPKE 1672
>U58749-5|AAU05597.1| 1551|Caenorhabditis elegans Hypothetical
protein B0496.3a protein.
Length = 1551
Score = 27.9 bits (59), Expect = 9.0
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +1
Query: 127 GSSLGSVTRMWSGCGFFGPFLPCWSHGNMILTLI 228
GS L + + +G + GP + CWS G ++ TL+
Sbjct: 234 GSPLYASPEIINGTPYKGPEVDCWSLGILLYTLV 267
>U58749-4|AAU05598.1| 1592|Caenorhabditis elegans Hypothetical
protein B0496.3b protein.
Length = 1592
Score = 27.9 bits (59), Expect = 9.0
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +1
Query: 127 GSSLGSVTRMWSGCGFFGPFLPCWSHGNMILTLI 228
GS L + + +G + GP + CWS G ++ TL+
Sbjct: 234 GSPLYASPEIINGTPYKGPEVDCWSLGILLYTLV 267
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,029,006
Number of Sequences: 27780
Number of extensions: 342423
Number of successful extensions: 1103
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1025
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1095
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1966828226
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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