Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_O20
         (803 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g35530.1 68418.m04226 40S ribosomal protein S3 (RPS3C)             270   7e-73
At3g53870.1 68416.m05951 40S ribosomal protein S3 (RPS3B) riboso...   266   9e-72
At2g31610.1 68415.m03862 40S ribosomal protein S3 (RPS3A)             266   1e-71
At3g06190.2 68416.m00712 speckle-type POZ protein-related simila...    32   0.51 
At3g06190.1 68416.m00711 speckle-type POZ protein-related simila...    32   0.51 
At3g48010.1 68416.m05234 cyclic nucleotide-regulated ion channel...    31   0.90 
At4g30360.1 68417.m04314 cyclic nucleotide-regulated ion channel...    30   1.6  
At5g14870.1 68418.m01744 cyclic nucleotide-regulated ion channel...    28   6.3  
At4g01830.1 68417.m00240 multidrug resistance P-glycoprotein, pu...    28   6.3  
At1g09830.1 68414.m01105 phosphoribosylamine--glycine ligase (PU...    28   8.3  

>At5g35530.1 68418.m04226 40S ribosomal protein S3 (RPS3C)
          Length = 248

 Score =  270 bits (662), Expect = 7e-73
 Identities = 132/175 (75%), Positives = 146/175 (83%)
 Frame = -3

Query: 768 QXFKEAKIGGDGVFKAELNEFLTRELAEDGYXXRXXPVTPIRSEIIIMATRTQSVLGEKG 589
           Q  K+ K   DGVF AELNE LTRELAEDGY      VTP+R+EIII ATRTQ+VLGEKG
Sbjct: 4   QISKKRKFVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKG 63

Query: 588 RRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVL 409
           RRIRELTS+VQKRF  P+ SVELYAEKVA RGLCAIAQAESLRYKL+GGLAVRRACYGVL
Sbjct: 64  RRIRELTSLVQKRFKFPQDSVELYAEKVANRGLCAIAQAESLRYKLLGGLAVRRACYGVL 123

Query: 408 RFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLR 244
           RF+MESGA+GCEV+VSGKLR  RAKSMKF DG M+ SG P  +Y++ A RHVLLR
Sbjct: 124 RFVMESGAKGCEVIVSGKLRAARAKSMKFKDGYMVSSGQPTKEYIDAAVRHVLLR 178



 Score = 59.7 bits (138), Expect = 2e-09
 Identities = 25/48 (52%), Positives = 33/48 (68%)
 Frame = -1

Query: 242 QGVLGIKVKIMLPWDQQGKNGPKKPQPDHILVTEPKDEPVPLEPTSEV 99
           QGVLG+KVKIML WD +GK GP  P PD +++  PK++ V + P   V
Sbjct: 179 QGVLGLKVKIMLDWDPKGKQGPMTPLPDVVIIHTPKEDDVYIAPAQVV 226


>At3g53870.1 68416.m05951 40S ribosomal protein S3 (RPS3B) ribosomal
           protein S3a - Xenopus laevis, PIR:R3XL3A
          Length = 249

 Score =  266 bits (653), Expect = 9e-72
 Identities = 131/175 (74%), Positives = 145/175 (82%)
 Frame = -3

Query: 768 QXFKEAKIGGDGVFKAELNEFLTRELAEDGYXXRXXPVTPIRSEIIIMATRTQSVLGEKG 589
           Q  K+ K   DGVF AELNE LTRELAEDGY      VTP+R+EIII ATRTQ+VLGEKG
Sbjct: 4   QISKKRKFVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKG 63

Query: 588 RRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVL 409
           RRIRELTS+VQKRF  P  SVELYAEKV  RGLCAIAQAESLRYKL+GGLAVRRACYGVL
Sbjct: 64  RRIRELTSLVQKRFKFPVDSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVL 123

Query: 408 RFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLR 244
           RF+MESGA+GCEV+VSGKLR  RAKSMKF DG M+ SG P  +Y+++A RHVLLR
Sbjct: 124 RFVMESGAKGCEVIVSGKLRAARAKSMKFKDGYMVSSGQPTKEYIDSAVRHVLLR 178



 Score = 57.6 bits (133), Expect = 9e-09
 Identities = 24/44 (54%), Positives = 31/44 (70%)
 Frame = -1

Query: 242 QGVLGIKVKIMLPWDQQGKNGPKKPQPDHILVTEPKDEPVPLEP 111
           QGVLGIKVK+ML WD +G +GPK P PD +++  PK+E     P
Sbjct: 179 QGVLGIKVKVMLDWDPKGISGPKTPLPDVVIIHSPKEEEAIYAP 222


>At2g31610.1 68415.m03862 40S ribosomal protein S3 (RPS3A)
          Length = 250

 Score =  266 bits (652), Expect = 1e-71
 Identities = 131/175 (74%), Positives = 144/175 (82%)
 Frame = -3

Query: 768 QXFKEAKIGGDGVFKAELNEFLTRELAEDGYXXRXXPVTPIRSEIIIMATRTQSVLGEKG 589
           Q  K+ K   DGVF AELNE LTRELAEDGY      VTP+R+EIII ATRTQ+VLGEKG
Sbjct: 4   QISKKRKFVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKG 63

Query: 588 RRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVL 409
           RRIRELTS+VQKRF  P  SVELYAEKV  RGLCAIAQAESLRYKL+GGLAVRRACYGVL
Sbjct: 64  RRIRELTSLVQKRFKFPVDSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVL 123

Query: 408 RFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLR 244
           RF+MESGA+GCEV+VSGKLR  RAKSMKF DG M+ SG P  +Y++ A RHVLLR
Sbjct: 124 RFVMESGAKGCEVIVSGKLRAARAKSMKFKDGYMVSSGQPTKEYIDAAVRHVLLR 178



 Score = 61.3 bits (142), Expect = 7e-10
 Identities = 27/44 (61%), Positives = 32/44 (72%)
 Frame = -1

Query: 242 QGVLGIKVKIMLPWDQQGKNGPKKPQPDHILVTEPKDEPVPLEP 111
           QGVLGIKVKIML WD  GK+GPK P PD +++  PKD+ V   P
Sbjct: 179 QGVLGIKVKIMLDWDPTGKSGPKTPLPDVVIIHAPKDDVVYSAP 222


>At3g06190.2 68416.m00712 speckle-type POZ protein-related similar
           to SPOP (novel nuclear speckle-type protein)
           (SP:O43791)   [Homo sapiens]; contains Pfam PF00651 :
           BTB/POZ domain; contains Pfam PF00917: MATH domain
          Length = 295

 Score = 31.9 bits (69), Expect = 0.51
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = +1

Query: 568 SQLTDSASFLSEHTLCPGGHNNDLRADGSD 657
           S+L +  + LSEH+L   GH  +L ADG D
Sbjct: 255 SELLEYVARLSEHSLTSSGHRKELFADGCD 284


>At3g06190.1 68416.m00711 speckle-type POZ protein-related similar
           to SPOP (novel nuclear speckle-type protein)
           (SP:O43791)   [Homo sapiens]; contains Pfam PF00651 :
           BTB/POZ domain; contains Pfam PF00917: MATH domain
          Length = 406

 Score = 31.9 bits (69), Expect = 0.51
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = +1

Query: 568 SQLTDSASFLSEHTLCPGGHNNDLRADGSD 657
           S+L +  + LSEH+L   GH  +L ADG D
Sbjct: 366 SELLEYVARLSEHSLTSSGHRKELFADGCD 395


>At3g48010.1 68416.m05234 cyclic nucleotide-regulated ion channel,
           putative (CNGC16) similar to cyclic nucleotide and
           calmodulin-regulated ion channel (cngc6) GI:4581207 from
           [Arabidopsis thaliana]
          Length = 705

 Score = 31.1 bits (67), Expect = 0.90
 Identities = 19/48 (39%), Positives = 24/48 (50%)
 Frame = +1

Query: 469 FGLGDSAKTTSSHLFSIQFYRLLWNVESLLYYGSQLTDSASFLSEHTL 612
           FG   +   TSS  F   FY L W + +L  YG  L  +AS LS  T+
Sbjct: 309 FGDAFTNDVTSSPFFDKYFYCLWWGLRNLSSYGQSL--AASTLSSETI 354


>At4g30360.1 68417.m04314 cyclic nucleotide-regulated ion channel,
           putative (CNGC17) similar to cyclic nucleotide and
           calmodulin-regulated ion channel cngc5 GI:4581205 from
           [Arabidopsis thaliana]
          Length = 720

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = +1

Query: 469 FGLGDSAKTTSSHLFSIQFYRLLWNVESLLYYGSQLTDSASFLSEHT 609
           FG   +    SS  F   FY L W ++ L  YG  L+ +  F+ E T
Sbjct: 333 FGNAITKNVVSSQFFERYFYCLWWGLQQLSSYGQNLS-TTMFMGETT 378


>At5g14870.1 68418.m01744 cyclic nucleotide-regulated ion channel,
           putative (CNGC18) similar to cyclic nucleotide and
           calmodulin-regulated ion channel (cngc6) GI:4581207 from
           [Arabidopsis thaliana]
          Length = 706

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 3/72 (4%)
 Frame = +1

Query: 409 ENTIASTTYSETSDKLVS*RFGLGDSAKTT---SSHLFSIQFYRLLWNVESLLYYGSQLT 579
           +N     ++ + +    + +FG+   A TT   ++   S   Y L W + +L  YG  +T
Sbjct: 278 QNVTQVLSHCDATSSTTNFKFGMFAEAFTTQVATTDFVSKYLYCLWWGLRNLSSYGQNIT 337

Query: 580 DSASFLSEHTLC 615
            S  +L E   C
Sbjct: 338 TSV-YLGETLFC 348


>At4g01830.1 68417.m00240 multidrug resistance P-glycoprotein,
           putative similar to multidrug resistant P-glycoprotein
           GI:4204793 from [Solanum tuberosum]
          Length = 1230

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 15/51 (29%), Positives = 27/51 (52%)
 Frame = +1

Query: 172 FFGPFLPCWSHGNMILTLIPSTPXPEKHMSGSSVDVVIARVSRVDHESIYK 324
           F G F+  +  G  +LTL+  T  P   MSG+++ +++ R S  +  +  K
Sbjct: 161 FVGGFVIAFLRG-WLLTLVMLTSIPLLAMSGAAIAIIVTRASSQEQAAYAK 210


>At1g09830.1 68414.m01105 phosphoribosylamine--glycine ligase (PUR2)
           Identical to phosphoribosylamine--glycine ligase,
           chloroplast [precursor] SP:P52420 from [Arabidopsis
           thaliana]
          Length = 532

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -3

Query: 390 GARGCEVVVSGKLRGQRAKSMKFVDG 313
           G+ GC+VVV   L G+ A     VDG
Sbjct: 273 GSAGCQVVVEEFLEGEEASFFALVDG 298


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,482,260
Number of Sequences: 28952
Number of extensions: 331557
Number of successful extensions: 904
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 869
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 903
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1824072800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)