Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_T7_O17
(853 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 144 2e-35
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 143 2e-35
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 65 1e-11
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 40 3e-04
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 31 0.27
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl... 28 1.5
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos... 27 4.5
SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch... 26 5.9
SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme Hus5|Schizosacch... 26 7.8
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 144 bits (348), Expect = 2e-35
Identities = 66/80 (82%), Positives = 71/80 (88%)
Frame = -1
Query: 370 PPWCPEATWPKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFS 191
P P + KV RAVCMLSNTT+IAEAW+RLDHKFDLMY+KRAFVHWYVGEGMEEGEFS
Sbjct: 364 PQHVPGSGIAKVNRAVCMLSNTTSIAEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFS 423
Query: 190 EAREDLAALEKDYEEVGMDS 131
EAREDLAALE+DYEEVG DS
Sbjct: 424 EAREDLAALERDYEEVGQDS 443
Score = 125 bits (302), Expect = 7e-30
Identities = 51/73 (69%), Positives = 63/73 (86%)
Frame = -3
Query: 557 PPNQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINY 378
P NQMVKCDPR G+YMA C+LYRGDV+P+DV AA+ +IK++RTIQFVDWCPTGFK+GI Y
Sbjct: 302 PYNQMVKCDPRTGRYMATCLLYRGDVIPRDVQAAVTSIKSRRTIQFVDWCPTGFKIGICY 361
Query: 377 QPPTVVPGGDLAQ 339
+PP VPG +A+
Sbjct: 362 EPPQHVPGSGIAK 374
Score = 60.9 bits (141), Expect = 2e-10
Identities = 25/38 (65%), Positives = 29/38 (76%)
Frame = -2
Query: 669 PYPRIXXPXVTYAPVIXAEKAYHEQLSVAEITNACFEP 556
PYPRI P VTY+P++ A KA+HE SV EITN CFEP
Sbjct: 265 PYPRIHFPLVTYSPIVSAAKAFHESNSVQEITNQCFEP 302
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 143 bits (347), Expect = 2e-35
Identities = 68/92 (73%), Positives = 74/92 (80%), Gaps = 1/92 (1%)
Frame = -1
Query: 403 PVSRSVSTTSHPPWCPEATW-PKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHW 227
P + PP E + KV RAVCMLSNTT+IAEAW+RLDHKFDLMY+KRAFVHW
Sbjct: 348 PTGFKIGICDRPPQHIEGSEIAKVDRAVCMLSNTTSIAEAWSRLDHKFDLMYSKRAFVHW 407
Query: 226 YVGEGMEEGEFSEAREDLAALEKDYEEVGMDS 131
YVGEGMEEGEFSEAREDLAALE+DYEEVG DS
Sbjct: 408 YVGEGMEEGEFSEAREDLAALERDYEEVGQDS 439
Score = 121 bits (291), Expect = 1e-28
Identities = 50/73 (68%), Positives = 61/73 (83%)
Frame = -3
Query: 557 PPNQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINY 378
P NQMVKCDPR G+YMA C+LYRGDV+P+DV AA+ TIK KRTIQFVDWCPTGFK+GI
Sbjct: 298 PYNQMVKCDPRAGRYMATCLLYRGDVIPRDVQAAVTTIKAKRTIQFVDWCPTGFKIGICD 357
Query: 377 QPPTVVPGGDLAQ 339
+PP + G ++A+
Sbjct: 358 RPPQHIEGSEIAK 370
Score = 62.1 bits (144), Expect = 1e-10
Identities = 26/38 (68%), Positives = 29/38 (76%)
Frame = -2
Query: 669 PYPRIXXPXVTYAPVIXAEKAYHEQLSVAEITNACFEP 556
PYPRI P VTYAP++ A KA+HE SV EITN CFEP
Sbjct: 261 PYPRIHFPLVTYAPIVSAAKAFHESNSVQEITNQCFEP 298
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 64.9 bits (151), Expect = 1e-11
Identities = 30/74 (40%), Positives = 48/74 (64%), Gaps = 4/74 (5%)
Frame = -1
Query: 343 PK-VQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAR---ED 176
PK ++ + + N+T+I E + RL +F M+ ++AF+HWY GEGM+E EF+EA D
Sbjct: 358 PKDLKMSATFIGNSTSIQEIFRRLGDQFSAMFRRKAFLHWYTGEGMDEMEFTEAESNMND 417
Query: 175 LAALEKDYEEVGMD 134
L + + Y+E G+D
Sbjct: 418 LVSEYQQYQEAGID 431
Score = 57.2 bits (132), Expect = 3e-09
Identities = 24/61 (39%), Positives = 35/61 (57%)
Frame = -3
Query: 551 NQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQP 372
N MV DPRHG+Y+ L+RG V K+V+ I +++TK + FV+W P + P
Sbjct: 298 NMMVAADPRHGRYLTVAALFRGKVSMKEVDEQIRSVQTKNSAYFVEWIPDNVLKAVCSVP 357
Query: 371 P 369
P
Sbjct: 358 P 358
Score = 25.8 bits (54), Expect = 7.8
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = -2
Query: 669 PYPRIXXPXVTYAPVIXAEKAYHEQLSVAEITNACFE 559
P+PR+ V +AP+ + + +SV E+T F+
Sbjct: 259 PFPRLHFFMVGFAPLAAIGSSSFQAVSVPELTQQMFD 295
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 40.3 bits (90), Expect = 3e-04
Identities = 17/66 (25%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Frame = -3
Query: 557 PPNQMVKCDP-RHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGIN 381
P NQMV +P + +++ + +G+ P DV+ ++ I+ +R F+ W P +V ++
Sbjct: 302 PKNQMVSVNPSKKSCFISILDIIQGEADPADVHKSLLRIRERRYASFIPWGPASIQVALS 361
Query: 380 YQPPTV 363
+ P +
Sbjct: 362 KKSPYI 367
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 30.7 bits (66), Expect = 0.27
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = -1
Query: 490 VVTSYPRM*TRPSLPSKPSVLSNSSTGVQPVSRSVSTTSHPPWCP 356
VV P + RP++P P LS V PV+ V + PP P
Sbjct: 552 VVPEAPSVPQRPAVPVVPEALSVPQPPVAPVAPEVPSVPQPPVAP 596
>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 709
Score = 28.3 bits (60), Expect = 1.5
Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
Frame = -2
Query: 285 GLALTTSSTSCTPSVLSCTGTSVRVWRRESSPKPVRTWLPS--RRITKKSAWTPLKARVR 112
G+ TS TS T S S++ S+P P W P+ S+ TP+ V
Sbjct: 148 GVPKFTSDTSSTVSSTPSLNHSLQNSMPPSTPTPPPVWAPTIVSSALGTSSKTPVYVVVD 207
Query: 111 EPKSTK 94
EP+ TK
Sbjct: 208 EPRFTK 213
>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 855
Score = 26.6 bits (56), Expect = 4.5
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = -3
Query: 599 NSFPSPRSQTHASSPPNQMVKCDPRH 522
N+ PS + ++ S+ PNQ +K P+H
Sbjct: 234 NAPPSIPANSNNSASPNQRIKASPKH 259
>SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 628
Score = 26.2 bits (55), Expect = 5.9
Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 3/32 (9%)
Frame = -1
Query: 454 SLPSKPSV---LSNSSTGVQPVSRSVSTTSHP 368
+LP KPS+ +++S V+P S STTS+P
Sbjct: 5 TLPPKPSISPSIASSFPTVKPFSSQNSTTSNP 36
>SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme
Hus5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 157
Score = 25.8 bits (54), Expect = 7.8
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = +2
Query: 473 WVRRHHGTAYSKPCTCHDGG 532
W R H Y+KPC DGG
Sbjct: 16 WRRDHPFGFYAKPCKSSDGG 35
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,651,076
Number of Sequences: 5004
Number of extensions: 55940
Number of successful extensions: 218
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 218
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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