BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FWDP01_T7_O17 (853 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 144 2e-35 SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 143 2e-35 SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 65 1e-11 SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 40 3e-04 SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 31 0.27 SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl... 28 1.5 SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos... 27 4.5 SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch... 26 5.9 SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme Hus5|Schizosacch... 26 7.8 >SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr 2|||Manual Length = 455 Score = 144 bits (348), Expect = 2e-35 Identities = 66/80 (82%), Positives = 71/80 (88%) Frame = -1 Query: 370 PPWCPEATWPKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFS 191 P P + KV RAVCMLSNTT+IAEAW+RLDHKFDLMY+KRAFVHWYVGEGMEEGEFS Sbjct: 364 PQHVPGSGIAKVNRAVCMLSNTTSIAEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFS 423 Query: 190 EAREDLAALEKDYEEVGMDS 131 EAREDLAALE+DYEEVG DS Sbjct: 424 EAREDLAALERDYEEVGQDS 443 Score = 125 bits (302), Expect = 7e-30 Identities = 51/73 (69%), Positives = 63/73 (86%) Frame = -3 Query: 557 PPNQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINY 378 P NQMVKCDPR G+YMA C+LYRGDV+P+DV AA+ +IK++RTIQFVDWCPTGFK+GI Y Sbjct: 302 PYNQMVKCDPRTGRYMATCLLYRGDVIPRDVQAAVTSIKSRRTIQFVDWCPTGFKIGICY 361 Query: 377 QPPTVVPGGDLAQ 339 +PP VPG +A+ Sbjct: 362 EPPQHVPGSGIAK 374 Score = 60.9 bits (141), Expect = 2e-10 Identities = 25/38 (65%), Positives = 29/38 (76%) Frame = -2 Query: 669 PYPRIXXPXVTYAPVIXAEKAYHEQLSVAEITNACFEP 556 PYPRI P VTY+P++ A KA+HE SV EITN CFEP Sbjct: 265 PYPRIHFPLVTYSPIVSAAKAFHESNSVQEITNQCFEP 302 >SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosaccharomyces pombe|chr 2|||Manual Length = 449 Score = 143 bits (347), Expect = 2e-35 Identities = 68/92 (73%), Positives = 74/92 (80%), Gaps = 1/92 (1%) Frame = -1 Query: 403 PVSRSVSTTSHPPWCPEATW-PKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHW 227 P + PP E + KV RAVCMLSNTT+IAEAW+RLDHKFDLMY+KRAFVHW Sbjct: 348 PTGFKIGICDRPPQHIEGSEIAKVDRAVCMLSNTTSIAEAWSRLDHKFDLMYSKRAFVHW 407 Query: 226 YVGEGMEEGEFSEAREDLAALEKDYEEVGMDS 131 YVGEGMEEGEFSEAREDLAALE+DYEEVG DS Sbjct: 408 YVGEGMEEGEFSEAREDLAALERDYEEVGQDS 439 Score = 121 bits (291), Expect = 1e-28 Identities = 50/73 (68%), Positives = 61/73 (83%) Frame = -3 Query: 557 PPNQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINY 378 P NQMVKCDPR G+YMA C+LYRGDV+P+DV AA+ TIK KRTIQFVDWCPTGFK+GI Sbjct: 298 PYNQMVKCDPRAGRYMATCLLYRGDVIPRDVQAAVTTIKAKRTIQFVDWCPTGFKIGICD 357 Query: 377 QPPTVVPGGDLAQ 339 +PP + G ++A+ Sbjct: 358 RPPQHIEGSEIAK 370 Score = 62.1 bits (144), Expect = 1e-10 Identities = 26/38 (68%), Positives = 29/38 (76%) Frame = -2 Query: 669 PYPRIXXPXVTYAPVIXAEKAYHEQLSVAEITNACFEP 556 PYPRI P VTYAP++ A KA+HE SV EITN CFEP Sbjct: 261 PYPRIHFPLVTYAPIVSAAKAFHESNSVQEITNQCFEP 298 >SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces pombe|chr 2|||Manual Length = 448 Score = 64.9 bits (151), Expect = 1e-11 Identities = 30/74 (40%), Positives = 48/74 (64%), Gaps = 4/74 (5%) Frame = -1 Query: 343 PK-VQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAR---ED 176 PK ++ + + N+T+I E + RL +F M+ ++AF+HWY GEGM+E EF+EA D Sbjct: 358 PKDLKMSATFIGNSTSIQEIFRRLGDQFSAMFRRKAFLHWYTGEGMDEMEFTEAESNMND 417 Query: 175 LAALEKDYEEVGMD 134 L + + Y+E G+D Sbjct: 418 LVSEYQQYQEAGID 431 Score = 57.2 bits (132), Expect = 3e-09 Identities = 24/61 (39%), Positives = 35/61 (57%) Frame = -3 Query: 551 NQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQP 372 N MV DPRHG+Y+ L+RG V K+V+ I +++TK + FV+W P + P Sbjct: 298 NMMVAADPRHGRYLTVAALFRGKVSMKEVDEQIRSVQTKNSAYFVEWIPDNVLKAVCSVP 357 Query: 371 P 369 P Sbjct: 358 P 358 Score = 25.8 bits (54), Expect = 7.8 Identities = 11/37 (29%), Positives = 20/37 (54%) Frame = -2 Query: 669 PYPRIXXPXVTYAPVIXAEKAYHEQLSVAEITNACFE 559 P+PR+ V +AP+ + + +SV E+T F+ Sbjct: 259 PFPRLHFFMVGFAPLAAIGSSSFQAVSVPELTQQMFD 295 >SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr 2|||Manual Length = 446 Score = 40.3 bits (90), Expect = 3e-04 Identities = 17/66 (25%), Positives = 36/66 (54%), Gaps = 1/66 (1%) Frame = -3 Query: 557 PPNQMVKCDP-RHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGIN 381 P NQMV +P + +++ + +G+ P DV+ ++ I+ +R F+ W P +V ++ Sbjct: 302 PKNQMVSVNPSKKSCFISILDIIQGEADPADVHKSLLRIRERRYASFIPWGPASIQVALS 361 Query: 380 YQPPTV 363 + P + Sbjct: 362 KKSPYI 367 >SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 857 Score = 30.7 bits (66), Expect = 0.27 Identities = 16/45 (35%), Positives = 21/45 (46%) Frame = -1 Query: 490 VVTSYPRM*TRPSLPSKPSVLSNSSTGVQPVSRSVSTTSHPPWCP 356 VV P + RP++P P LS V PV+ V + PP P Sbjct: 552 VVPEAPSVPQRPAVPVVPEALSVPQPPVAPVAPEVPSVPQPPVAP 596 >SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual Length = 709 Score = 28.3 bits (60), Expect = 1.5 Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 2/66 (3%) Frame = -2 Query: 285 GLALTTSSTSCTPSVLSCTGTSVRVWRRESSPKPVRTWLPS--RRITKKSAWTPLKARVR 112 G+ TS TS T S S++ S+P P W P+ S+ TP+ V Sbjct: 148 GVPKFTSDTSSTVSSTPSLNHSLQNSMPPSTPTPPPVWAPTIVSSALGTSSKTPVYVVVD 207 Query: 111 EPKSTK 94 EP+ TK Sbjct: 208 EPRFTK 213 >SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizosaccharomyces pombe|chr 3|||Manual Length = 855 Score = 26.6 bits (56), Expect = 4.5 Identities = 10/26 (38%), Positives = 17/26 (65%) Frame = -3 Query: 599 NSFPSPRSQTHASSPPNQMVKCDPRH 522 N+ PS + ++ S+ PNQ +K P+H Sbjct: 234 NAPPSIPANSNNSASPNQRIKASPKH 259 >SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr 1|||Manual Length = 628 Score = 26.2 bits (55), Expect = 5.9 Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 3/32 (9%) Frame = -1 Query: 454 SLPSKPSV---LSNSSTGVQPVSRSVSTTSHP 368 +LP KPS+ +++S V+P S STTS+P Sbjct: 5 TLPPKPSISPSIASSFPTVKPFSSQNSTTSNP 36 >SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme Hus5|Schizosaccharomyces pombe|chr 1|||Manual Length = 157 Score = 25.8 bits (54), Expect = 7.8 Identities = 10/20 (50%), Positives = 11/20 (55%) Frame = +2 Query: 473 WVRRHHGTAYSKPCTCHDGG 532 W R H Y+KPC DGG Sbjct: 16 WRRDHPFGFYAKPCKSSDGG 35 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,651,076 Number of Sequences: 5004 Number of extensions: 55940 Number of successful extensions: 218 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 192 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 218 length of database: 2,362,478 effective HSP length: 72 effective length of database: 2,002,190 effective search space used: 422462090 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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