Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_O15
         (799 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    26   0.50 
SPBC660.14 |mik1||mitotic inhibitor kinase Mik1|Schizosaccharomy...    29   0.77 
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9...    28   1.8  
SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo...    27   3.1  
SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo...    27   3.1  
SPBC32H8.02c |nep2|mug120|nedd8 protease Nep2|Schizosaccharomyce...    27   3.1  
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy...    27   4.1  
SPAC3G9.07c |hos2|hda1, phd1|histone deacetylase |Schizosaccharo...    26   5.4  
SPCC1795.05c |||uridylate kinase|Schizosaccharomyces pombe|chr 3...    25   9.5  
SPBC3D6.06c |||ribose-phosphate pyrophosphokinase |Schizosacchar...    25   9.5  
SPAC17C9.16c ||SPAC9E9.16|MFS family transmembrane transporter M...    25   9.5  
SPBC30B4.07c |tfb4||transcription factor TFIIH complex subunit T...    25   9.5  

>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 26.2 bits (55), Expect(2) = 0.50
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +2

Query: 560 LTSEGKKSLTISWCPAD 610
           LT   K +L++SWCP D
Sbjct: 256 LTGHQKAALSLSWCPED 272



 Score = 21.8 bits (44), Expect(2) = 0.50
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +2

Query: 593 SWCPADHNLSAYANM 637
           SWCP++ N  A A++
Sbjct: 310 SWCPSNSNRVAVASL 324


>SPBC660.14 |mik1||mitotic inhibitor kinase Mik1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 581

 Score = 29.1 bits (62), Expect = 0.77
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +2

Query: 212 FSMSKTLPVSSTTGVSFHRWRFSSELLEPHAFLSPXPVYAL 334
           F ++ +LPVSS   +   R   + E+L  H +  P  VY+L
Sbjct: 436 FGLATSLPVSSMVDLEGDRVYIAPEILASHNYGKPADVYSL 476


>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
           Srb9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1223

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +1

Query: 589 YIVVSGGPQLVRVCEHVRFSCVQXSVDQLLDNK 687
           Y +     +L++ C+H  F CV+ S+ +L DNK
Sbjct: 870 YFLEDDSEKLLKACQH--FICVKDSIKRLGDNK 900


>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 15/40 (37%), Positives = 17/40 (42%)
 Frame = +2

Query: 431 TSLVLGCLPRPGGRCTSRDGSPASELDCNVFR*FSPFLAW 550
           T   L  +PR GG  T R G  A    C   R F+P   W
Sbjct: 69  TGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTW 108


>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 15/40 (37%), Positives = 17/40 (42%)
 Frame = +2

Query: 431 TSLVLGCLPRPGGRCTSRDGSPASELDCNVFR*FSPFLAW 550
           T   L  +PR GG  T R G  A    C   R F+P   W
Sbjct: 69  TGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTW 108


>SPBC32H8.02c |nep2|mug120|nedd8 protease Nep2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 415

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
 Frame = -2

Query: 561 KFDHQARKGENHRKTL---QSSSEAGLPSRLVQRPPGLGRQPRTRLV 430
           K D Q       R +L   +++S + LP+ ++QRPP +  +P T  +
Sbjct: 359 KLDSQPNSSPVRRPSLIKVKTASTSVLPTSILQRPPSIVPRPETAAI 405


>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 578

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = +2

Query: 305 FLSPXPVYALVQLQVHSMFSVHYFIQQLVILPYRNKLPAHSVTSL 439
           F  P    A VQ Q+  + S +Y++QQ     YR+ L A++  SL
Sbjct: 462 FEFPANKVANVQSQLEKLVSKNYYLQQSAKDGYRSYLQAYASYSL 506


>SPAC3G9.07c |hos2|hda1, phd1|histone deacetylase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 434

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = -2

Query: 633 FAYADKLWSAGHHDIVNDFFPSEVKFDHQARKG 535
           F  +D++ +   H    DFFP+   FD    KG
Sbjct: 204 FYESDRVLTVSFHKYNGDFFPATGNFDENGVKG 236


>SPCC1795.05c |||uridylate kinase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 191

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +1

Query: 520 LPMIFTLSCLVIKFDF*REKVIDYIVVSGGPQLVRVCE 633
           +PM  T+S L  K     +K ID  ++ G P+ +  CE
Sbjct: 63  VPMEITISLLETKMKECHDKGIDKFLIDGFPREMDQCE 100


>SPBC3D6.06c |||ribose-phosphate pyrophosphokinase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 341

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 6/65 (9%)
 Frame = +1

Query: 610 PQLVR-VCEHVRFSCVQXSVDQLLDNKTDVIIFQKLRGSHCLXVVPGR-----HVLDQQI 771
           P+L   +CEH+     +  + +  + +T V I Q +RG     V P       H+++  I
Sbjct: 13  PKLTESICEHLCLDIGRVELSKFSNGETSVRIKQSVRGCDVYIVSPASGQVNDHLMELLI 72

Query: 772 XXSXC 786
             S C
Sbjct: 73  MISAC 77


>SPAC17C9.16c ||SPAC9E9.16|MFS family transmembrane transporter
           Mfs1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 531

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 14/23 (60%), Positives = 14/23 (60%)
 Frame = +3

Query: 237 SPALPASASTGGASLPSCWSPTL 305
           SPAL    STGGASL   W P L
Sbjct: 189 SPAL----STGGASLADIWQPWL 207


>SPBC30B4.07c |tfb4||transcription factor TFIIH complex subunit Tfb4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 297

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = +2

Query: 200 PYSWFSMSKTLPVS 241
           P SW+S+SK +PVS
Sbjct: 34  PASWYSLSKKVPVS 47


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,992,360
Number of Sequences: 5004
Number of extensions: 60775
Number of successful extensions: 207
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 207
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)