Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_O15
         (799 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44841| Best HMM Match : 7tm_1 (HMM E-Value=4.79999e-40)             30   2.5  
SB_7365| Best HMM Match : ABC_membrane (HMM E-Value=0)                 30   2.5  
SB_36057| Best HMM Match : DUF626 (HMM E-Value=2)                      29   5.8  
SB_22546| Best HMM Match : ABC_tran (HMM E-Value=0)                    29   5.8  
SB_26631| Best HMM Match : ig (HMM E-Value=1.6e-22)                    29   5.8  
SB_16197| Best HMM Match : zf-CCHC (HMM E-Value=0.19)                  28   7.6  

>SB_44841| Best HMM Match : 7tm_1 (HMM E-Value=4.79999e-40)
          Length = 1198

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
 Frame = -3

Query: 584  MTFSLQKSNLITKQERVKIIGRHYNQALKLDSHLD--WYNDRLAWGDSQGQD*SQNELEA 411
            M  + Q+ +L+     VK++  H+ +   LD +    WY     W   +GQ      LE 
Sbjct: 1056 MDKTFQRGDLMDYGVLVKVVPAHWGRDEDLDKNTISCWYRPGFRWSQQRGQSVLPAHLEH 1115

Query: 410  YSGMGE 393
            +  +GE
Sbjct: 1116 FKFIGE 1121


>SB_7365| Best HMM Match : ABC_membrane (HMM E-Value=0)
          Length = 1301

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
 Frame = -1

Query: 301 VGLQQLGREAPPVEADA---GSAGDRQRLTHREPRVRAGSEAGRERGLV 164
           +G  QLG+  P +EA A   G+A +   +  R P + + SEAG + G V
Sbjct: 600 IGATQLGQAGPNIEAIATARGAAHELFAIIDRVPPIDSSSEAGAKPGNV 648


>SB_36057| Best HMM Match : DUF626 (HMM E-Value=2)
          Length = 401

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 17/66 (25%), Positives = 28/66 (42%)
 Frame = -1

Query: 397 ENNKLLYKIMNTEHTMYLKLDKSVDGXRRQESVGLQQLGREAPPVEADAGSAGDRQRLTH 218
           E N   Y+ MN     +   D+ V   R+ +SV   ++ R+ PP        GD+    +
Sbjct: 265 EGNVTQYEAMNR----HASRDQHVPANRQYDSVDSTRMSRQNPPARRARNDTGDQGEPGY 320

Query: 217 REPRVR 200
              R+R
Sbjct: 321 ANTRIR 326


>SB_22546| Best HMM Match : ABC_tran (HMM E-Value=0)
          Length = 844

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
 Frame = -1

Query: 301 VGLQQLGREAPPVEADA---GSAGDRQRLTHREPRVRAGSEAGRERGLVR 161
           VG  QLG+  P +EA A   G+A +   +  R+P + + SE G +   V+
Sbjct: 65  VGATQLGQAGPNIEAIATARGAAYELYSIIDRQPPIDSSSEEGLKPASVK 114


>SB_26631| Best HMM Match : ig (HMM E-Value=1.6e-22)
          Length = 1123

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 17/66 (25%), Positives = 28/66 (42%)
 Frame = -1

Query: 397  ENNKLLYKIMNTEHTMYLKLDKSVDGXRRQESVGLQQLGREAPPVEADAGSAGDRQRLTH 218
            E N   Y+ MN     +   D+ V   R+ +SV   ++ R+ PP        GD+    +
Sbjct: 987  EGNVTQYEAMNR----HASRDQHVPANRQYDSVDSTRMSRQNPPARRARNDTGDQGEPGY 1042

Query: 217  REPRVR 200
               R+R
Sbjct: 1043 ANTRIR 1048


>SB_16197| Best HMM Match : zf-CCHC (HMM E-Value=0.19)
          Length = 241

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 29/100 (29%), Positives = 45/100 (45%), Gaps = 1/100 (1%)
 Frame = -1

Query: 481 TGTTTAWPGETAKDKTSHRMSWKLIPVWENNKLLYKIMNTEHTMYLKLDKSVDGXRRQES 302
           TG   ++  E     T  ++   LI    N K+  K++  EH   L LDK++D  R  E+
Sbjct: 66  TGFAMSYFKECKYTNTDEQIIDALIFGSANPKVQSKLL--EHDNSLTLDKAIDIARTAEA 123

Query: 301 VGLQQLG-REAPPVEADAGSAGDRQRLTHREPRVRAGSEA 185
              Q    R   PV A       +Q  TH++P+ ++ S A
Sbjct: 124 TQAQLADIRAEHPVTAVNAM---KQSSTHKKPQTQSHSTA 160


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,284,078
Number of Sequences: 59808
Number of extensions: 491112
Number of successful extensions: 1587
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1280
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1584
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2203769656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)