Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_O15
         (799 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g64400.1 68418.m08090 expressed protein contains Pfam domain,...    33   0.29 
At3g11690.1 68416.m01433 expressed protein                             31   0.67 

>At5g64400.1 68418.m08090 expressed protein contains Pfam domain,
           PF04933: Protein of unknown function (DUF657)
          Length = 144

 Score = 32.7 bits (71), Expect = 0.29
 Identities = 22/54 (40%), Positives = 30/54 (55%)
 Frame = +3

Query: 147 RAGGRRTSPRSRPASDPARTRGSL*VRRCRSPALPASASTGGASLPSCWSPTLS 308
           R+ G R++PR RPA+  AR+     V R   PA PA AS GG  + S    T++
Sbjct: 4   RSSGGRSAPRPRPAA--ARSPAPQPVHRAPPPA-PAQASGGGGGMFSGIGSTIA 54


>At3g11690.1 68416.m01433 expressed protein
          Length = 252

 Score = 31.5 bits (68), Expect = 0.67
 Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
 Frame = +3

Query: 144 PRAGGRRTSPRSRPASDPART--RGSL*VRRCRSPALPASASTGGASLPSCWSPTLSC 311
           PR   R+T P   P+S P+R+  R  L  R   SP+ P ++  G      C   T SC
Sbjct: 9   PRQISRQTKPSDTPSSSPSRSNRRQPLLQRSLSSPS-PRASCGGSTPAEFCGGTTASC 65


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,024,487
Number of Sequences: 28952
Number of extensions: 335443
Number of successful extensions: 1002
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 964
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1002
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1804564000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)