Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_O12
         (840 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016437-4|AAB65886.1|  416|Caenorhabditis elegans Hypothetical ...    29   5.4  
U46673-3|AAC48151.1|  506|Caenorhabditis elegans Aldehyde dehydr...    28   9.5  

>AF016437-4|AAB65886.1|  416|Caenorhabditis elegans Hypothetical
           protein F13H6.5 protein.
          Length = 416

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +1

Query: 1   FFFFFLRVPFSHFIIVYIKRILLSLEVHTVRYIARLTGSLCG 126
           F F F    F H  ++YIK ++ + +V    Y ++  G  CG
Sbjct: 353 FVFLFCNQQFRHMTVMYIKAVIQTDQVKRKSYFSQ-AGMRCG 393


>U46673-3|AAC48151.1|  506|Caenorhabditis elegans Aldehyde
           dehydrogenase protein 10 protein.
          Length = 506

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = +3

Query: 87  GEVYRTTDRLVMRSAGFAGFNKMHMLVARRYISNCPTTNIHTTI*RSK 230
           GE+   T RL ++   FA F K ++  A+++    PTT +      SK
Sbjct: 303 GEICLCTSRLFVQKPIFADFVKSYVEEAKKFTVGDPTTQVQIGAMNSK 350


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,785,879
Number of Sequences: 27780
Number of extensions: 335096
Number of successful extensions: 766
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 706
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 766
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2077023564
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)