Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_O08
         (843 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos...    50   4e-07
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc...    32   0.12 
SPAPB1E7.03 |rpc82||DNA-directed RNA polymerase III complex subu...    29   0.62 
SPAC12G12.02 ||SPAC630.01c|rRNA processing protein, unnamed|Schi...    29   0.82 
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    29   1.1  
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub...    28   1.4  
SPCC188.04c |spc25||kinetochore protein Spc25|Schizosaccharomyce...    28   1.9  
SPAC4F10.06 |||BUD22 family protein|Schizosaccharomyces pombe|ch...    27   4.4  
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo...    26   5.8  

>SPBC17D11.05 |tif32||translation initiation factor
            eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 932

 Score = 50.0 bits (114), Expect = 4e-07
 Identities = 27/113 (23%), Positives = 55/113 (48%)
 Frame = -2

Query: 488  KKVDYFERAKRLEEIPLLQKSLEEKQVQDKAFWEQQEKERIEQLIEARALDVATSERMSR 309
            K++D+ ERA R E IPL ++  +++   D+  + ++EK+R E         +   +  ++
Sbjct: 680  KRIDHLERAYRREAIPLWEEDAKQQAEHDREIFYEREKQRKEVQERKHEQAIKDKKAFAQ 739

Query: 308  MAVHRDEFMARLRSERGAAYAQKVAAFNEKLQAEKEKRLAERRAQRIEKRRHE 150
             A +   +   +  ER  AY +  A     + AE+E++  E   Q++ +   E
Sbjct: 740  FASYIHAYKQNIDDERDKAYQEAYAKAKNVIDAERERQRKEIFEQKLAEAIRE 792


>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 31.9 bits (69), Expect = 0.12
 Identities = 19/99 (19%), Positives = 48/99 (48%)
 Frame = -2

Query: 470 ERAKRLEEIPLLQKSLEEKQVQDKAFWEQQEKERIEQLIEARALDVATSERMSRMAVHRD 291
           ++ + L++I   +K  ++K+    A  E++++   E+L E  A     ++R       R+
Sbjct: 583 KQERELKKIREKEKKRDKKKQLKLAKEEERQRREAERLAEQAAQKALEAKRQEEARKKRE 642

Query: 290 EFMARLRSERGAAYAQKVAAFNEKLQAEKEKRLAERRAQ 174
           E   +   E+     ++     ++ Q E+EK+L +++ +
Sbjct: 643 EQRLKREQEKKQQELERQKREEKQKQKEREKKLKKQQQE 681



 Score = 29.5 bits (63), Expect = 0.62
 Identities = 28/107 (26%), Positives = 51/107 (47%)
 Frame = -2

Query: 470 ERAKRLEEIPLLQKSLEEKQVQDKAFWEQQEKERIEQLIEARALDVATSERMSRMAVHRD 291
           E  K+ EE  L ++  +++Q  ++   E+++K++  +    +    A  E+M+R    R+
Sbjct: 636 EARKKREEQRLKREQEKKQQELERQKREEKQKQKEREKKLKKQQQEADREKMAREQRLRE 695

Query: 290 EFMARLRSERGAAYAQKVAAFNEKLQAEKEKRLAERRAQRIEKRRHE 150
           E   R+  ER            EKL  E+E+R   RR + +EK   E
Sbjct: 696 EEEKRILEERKR---------REKLDKEEEER---RRRELLEKESEE 730


>SPAPB1E7.03 |rpc82||DNA-directed RNA polymerase III complex subunit
           Rpc82 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 591

 Score = 29.5 bits (63), Expect = 0.62
 Identities = 31/103 (30%), Positives = 49/103 (47%), Gaps = 1/103 (0%)
 Frame = -2

Query: 470 ERAKRLEEIPLLQKSLEEKQVQDKAFWEQQEKERIEQ-LIEARALDVATSERMSRMAVHR 294
           ERA RL  I   +  +EEKQ+ + A   Q++   + Q + E  AL++    R S  A  +
Sbjct: 438 ERAIRLLRIIKDKGKIEEKQLANIALLRQRDLRTVLQAMAEIGALELQEVPRSSDRAPSK 497

Query: 293 DEFMARLRSERGAAYAQKVAAFNEKLQAEKEKRLAERRAQRIE 165
             F+   R +R  AY+  +      + A    RL + RAQR +
Sbjct: 498 TFFLWFHRPDR--AYSLLLDELYHVI-ARLYMRLRDARAQRAQ 537


>SPAC12G12.02 ||SPAC630.01c|rRNA processing protein,
           unnamed|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 183

 Score = 29.1 bits (62), Expect = 0.82
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = -2

Query: 488 KKVDYFERAKRLEEIPLLQKSLEEKQVQDK 399
           KKV +FER K    I  L+KSL+++ + D+
Sbjct: 64  KKVRFFERKKAERRIKQLEKSLKDETMDDE 93


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
 Frame = -2

Query: 452 EEIPLLQKSLEEKQVQDKAFWEQQEKERIEQLIEAR-ALDVATSERMSRMA 303
           E  P  Q    EK  ++K   E+QE+E+ E+ I+   A  +A  ERM++M+
Sbjct: 386 ESEPEDQDEPSEKDDENKDVEEEQEQEQEEEQIDPEEAKRIALRERMAKMS 436


>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
           subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 544

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 18/55 (32%), Positives = 28/55 (50%)
 Frame = -2

Query: 314 SRMAVHRDEFMARLRSERGAAYAQKVAAFNEKLQAEKEKRLAERRAQRIEKRRHE 150
           S  A   DE++ +L  E      +K   +N   +A KEK+L ++RAQ    R+ E
Sbjct: 44  SHSASEADEYVCKLSYEGN----RKKRIYNGSAEAGKEKKLQKQRAQEERIRQKE 94


>SPCC188.04c |spc25||kinetochore protein Spc25|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 238

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 22/97 (22%), Positives = 46/97 (47%), Gaps = 1/97 (1%)
 Frame = -2

Query: 485 KVDYFERAKRLEEIPL-LQKSLEEKQVQDKAFWEQQEKERIEQLIEARALDVATSERMSR 309
           K +Y  +   + E     +KSLE+ + + + F E  EKE  EQ I  + +  +  E++  
Sbjct: 42  KNEYLRQLSEINEAQKKAEKSLEQTEARKQNFTELLEKEHEEQAITEQEI-FSFQEKLDA 100

Query: 308 MAVHRDEFMARLRSERGAAYAQKVAAFNEKLQAEKEK 198
           M   + +    L   R A  + K     ++++A++++
Sbjct: 101 MLKRKQKLSEELDHYR-AIISSKRELRAQEMEAKRKQ 136


>SPAC4F10.06 |||BUD22 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 388

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 26/90 (28%), Positives = 39/90 (43%)
 Frame = -2

Query: 461 KRLEEIPLLQKSLEEKQVQDKAFWEQQEKERIEQLIEARALDVATSERMSRMAVHRDEFM 282
           K LEE+ + ++     Q   +A WE++  +    LI+      AT ER  R      E  
Sbjct: 284 KELEEVDIPKRKNRRGQRARQAIWEKKYGKGANHLIKK-----ATEERSIR------EER 332

Query: 281 ARLRSERGAAYAQKVAAFNEKLQAEKEKRL 192
            R   ER A  A +  AF E    +K ++L
Sbjct: 333 QRKYEERQAKRAARENAFTEHQTPQKPEQL 362


>SPAC56F8.03 |||translation initiation factor IF2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1079

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 26/95 (27%), Positives = 52/95 (54%), Gaps = 2/95 (2%)
 Frame = -2

Query: 446 IPLLQKSLEEKQVQDKAFWEQQEKERIEQLIEARALDVATSERMSRMAVHRDEFMARLRS 267
           +  LQK LEEK+ +      ++E++RI +  EAR  +    +R++ +   R E     + 
Sbjct: 247 VTALQKMLEEKRAR------EEEEQRIRE-EEARIAE--EEKRLAEVEEARKEEARLKKK 297

Query: 266 ERGAAYAQKVAAFNEKL-QAEKEKR-LAERRAQRI 168
           E+     +++ A  + L + +KE++ LA+RR Q++
Sbjct: 298 EKERKKKEEMKAQGKYLSKKQKEQQALAQRRLQQM 332


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,259,149
Number of Sequences: 5004
Number of extensions: 35865
Number of successful extensions: 141
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 416455520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)