Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_O06
         (843 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo...   127   2e-30
SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo...   126   3e-30
SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyc...    28   1.4  

>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  127 bits (306), Expect = 2e-30
 Identities = 63/122 (51%), Positives = 84/122 (68%), Gaps = 2/122 (1%)
 Frame = -2

Query: 737 IQRKXPXIIFNQDQGXTRAFRNIPGVEXXXXXXXXXXXLAPGGHLGRFVIWTQSAFGRLD 558
           +QR+ P ++FN+D G  +AFRNIPGVE           LAPGGHLGRFVIWT+SAFG LD
Sbjct: 202 VQRRGPLVVFNEDAGIVKAFRNIPGVEIVNVRRLNLLQLAPGGHLGRFVIWTKSAFGLLD 261

Query: 557 PLFGSWRTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPN-KRVIRA-TRKLNPL 384
            +FGS    ++ KKN+ LP+  ++N D+TRL+ SDEI+ +++A    RV RA  +K NPL
Sbjct: 262 SVFGSTTEAAQLKKNYFLPENIISNADVTRLINSDEIQSIVKAAGPSRVKRAHVQKKNPL 321

Query: 383 TN 378
            N
Sbjct: 322 KN 323


>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  126 bits (305), Expect = 3e-30
 Identities = 63/122 (51%), Positives = 84/122 (68%), Gaps = 2/122 (1%)
 Frame = -2

Query: 737 IQRKXPXIIFNQDQGXTRAFRNIPGVEXXXXXXXXXXXLAPGGHLGRFVIWTQSAFGRLD 558
           +QR+ P ++FN+D G  +AFRNIPGVE           LAPGGHLGRFVIWT+SAFG LD
Sbjct: 202 VQRRGPLVVFNEDTGIVKAFRNIPGVEIVNVRRLNLLQLAPGGHLGRFVIWTKSAFGLLD 261

Query: 557 PLFGSWRTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPN-KRVIRA-TRKLNPL 384
            +FGS    ++ KKN+ LP+  ++N D+TRL+ SDEI+ +++A    RV RA  +K NPL
Sbjct: 262 SVFGSTTEVAQLKKNYFLPENIISNADVTRLINSDEIQSIVKAAGPSRVKRAHVQKKNPL 321

Query: 383 TN 378
            N
Sbjct: 322 KN 323


>SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 430

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = -3

Query: 544 HGGHHQNKRRTSTCPNRRW 488
           HGGH       S CPN RW
Sbjct: 378 HGGHTNRISEFSWCPNERW 396


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,564,440
Number of Sequences: 5004
Number of extensions: 43656
Number of successful extensions: 133
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 416455520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)