Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_O06
         (843 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0578 + 4295386-4296489,4297394-4297507                          124   1e-28
03_06_0298 - 32925441-32925998,32926371-32926730,32927161-329272...   121   8e-28
09_06_0015 - 20234231-20234344,20234846-20234902,20234968-202351...    31   1.1  
03_02_0027 + 5100865-5100878,5102241-5102708,5102795-5103021,510...    30   2.0  
02_05_1166 - 34633770-34634301,34634559-34635181,34635279-34637216     29   3.5  
01_01_0612 + 4565422-4565481,4565597-4565671,4565760-4566332,456...    29   6.1  

>07_01_0578 + 4295386-4296489,4297394-4297507
          Length = 405

 Score =  124 bits (298), Expect = 1e-28
 Identities = 62/146 (42%), Positives = 89/146 (60%), Gaps = 1/146 (0%)
 Frame = -2

Query: 737 IQRKXPXIIFNQDQGX-TRAFRNIPGVEXXXXXXXXXXXLAPGGHLGRFVIWTQSAFGRL 561
           I RK P I++  +     +AFRN+PGV+           LAPGGHLGRFVIWT+SAF +L
Sbjct: 206 INRKGPLIVYGTEGSKIVKAFRNLPGVDVANVERLNLLDLAPGGHLGRFVIWTESAFKKL 265

Query: 560 DPLFGSWRTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLT 381
           + ++G++  PS +KK F LP+PKMAN DL R++ SDE++ V++  NK V R  ++ NPL 
Sbjct: 266 EEVYGTFEAPSLKKKGFILPRPKMANADLGRIINSDEVQSVVKPLNKEVKRREKRKNPLK 325

Query: 380 NNQGDAETQSLRGRAEEESYLRAAQK 303
           N     +     G A + + L  A +
Sbjct: 326 NVAAVLKLNPYFGTARKMATLAEAAR 351


>03_06_0298 -
           32925441-32925998,32926371-32926730,32927161-32927230,
           32927642-32927797,32929181-32929242,32929339-32929352,
           32930421-32930520,32931474-32932574
          Length = 806

 Score =  121 bits (291), Expect = 8e-28
 Identities = 62/146 (42%), Positives = 87/146 (59%), Gaps = 1/146 (0%)
 Frame = -2

Query: 737 IQRKXPXIIFNQDQGXT-RAFRNIPGVEXXXXXXXXXXXLAPGGHLGRFVIWTQSAFGRL 561
           I RK P I++  +     +AFRN+PGV+           LAPGGHLGRFVIWT+ AF +L
Sbjct: 205 INRKGPLIVYGTEGSKVVKAFRNLPGVDVANVERLNLLDLAPGGHLGRFVIWTECAFKKL 264

Query: 560 DPLFGSWRTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLT 381
           D ++G + TP+ +KK F LP+PKMAN DL+RL+ SDE++ V++  NK V     + NPL 
Sbjct: 265 DEVYGGFDTPALKKKGFVLPRPKMANADLSRLINSDEVQSVVKPINKEVKLREARRNPLK 324

Query: 380 NNQGDAETQSLRGRAEEESYLRAAQK 303
           N     +     G A + + L  A +
Sbjct: 325 NVAAVLKLNPYFGTARKMAALAEAAR 350


>09_06_0015 -
           20234231-20234344,20234846-20234902,20234968-20235111,
           20235581-20235745,20235817-20236005,20236086-20236326,
           20236412-20236512,20236704-20237241,20238101-20238132,
           20238677-20238760
          Length = 554

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 2/89 (2%)
 Frame = -2

Query: 545 SWRTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNQGD 366
           S R+PS      + P P +    L R  + DE    L+A  ++ ++A ++       +  
Sbjct: 367 SHRSPSLYPHVEHAPSPALTEQRLLREQQDDEYLASLQADQEKELKALQEAELRRLEETA 426

Query: 365 AETQSLRGRAEEESYLRAAQ--KEELEGS 285
           A   +L  + +EE   R  Q  +EELE S
Sbjct: 427 AREAALEKQKQEEEERRKKQLEEEELESS 455


>03_02_0027 +
           5100865-5100878,5102241-5102708,5102795-5103021,
           5103670-5104577
          Length = 538

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 25/77 (32%), Positives = 36/77 (46%), Gaps = 4/77 (5%)
 Frame = -3

Query: 634 TS*SWLREVILDVSSSGLSPHSAGLTPYSGHGGHHQNKRR----TSTCPNRRWPTLTSHV 467
           +S S+LR + LD+SSS  +P S+       H  HHQ   +     S+ P   WP      
Sbjct: 376 SSSSFLRCLGLDMSSSSSAPPSSSGQQQQHHHHHHQETMQVPLPASSLP--EWPPRLQPE 433

Query: 466 FSSLMRSGRSSVLPTNA 416
            S ++ SG    LP +A
Sbjct: 434 PSPMLSSGLGLGLPYDA 450


>02_05_1166 - 34633770-34634301,34634559-34635181,34635279-34637216
          Length = 1030

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
 Frame = -2

Query: 620 APG--GHLGRFVIWTQSAFGRLDPLFGSWRTPSKQKKNFNLPQPKMANT 480
           APG  G  GR+V+   SA   LDP F SW   S++ K F++ +   A++
Sbjct: 670 APGVDGCSGRYVV-AASAGNALDPGFCSWDYYSREAKAFHIEEISHASS 717


>01_01_0612 +
           4565422-4565481,4565597-4565671,4565760-4566332,
           4566438-4566551,4566676-4567377
          Length = 507

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +3

Query: 555 GVKPAECGLSPDDETSKMTSRSQLQEVQLVNIQELHTGDVA 677
           G+  A  G++ DD+  K  SR  L  + ++N+    +GD A
Sbjct: 147 GLSCARGGVASDDDDDKQASRRALPPMPVLNLSSDSSGDAA 187


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,575,755
Number of Sequences: 37544
Number of extensions: 324369
Number of successful extensions: 867
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 848
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 865
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2338704516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)