Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_O06
         (843 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) str...   119   3e-27
At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S...   115   3e-26
At3g58160.1 68416.m06485 myosin heavy chain, putative similar to...    28   8.9  
At1g30950.1 68414.m03790 unusual floral organ (UFO) / F-box fami...    28   8.9  
At1g04850.1 68414.m00481 ubiquitin-associated (UBA)/TS-N domain-...    28   8.9  

>At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) strong
           similarity to 60S ribosomal protein L1 GB:P49691
          Length = 406

 Score =  119 bits (286), Expect = 3e-27
 Identities = 62/146 (42%), Positives = 85/146 (58%), Gaps = 1/146 (0%)
 Frame = -2

Query: 737 IQRKXPXIIFNQDQGX-TRAFRNIPGVEXXXXXXXXXXXLAPGGHLGRFVIWTQSAFGRL 561
           I RK P +++  +     +AFRN+PGVE           LAPGGHLGRFVIWT+SAF +L
Sbjct: 207 ISRKGPLVVYGTEGSKIVKAFRNLPGVELCHVERLNLLKLAPGGHLGRFVIWTKSAFEKL 266

Query: 560 DPLFGSWRTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLT 381
           + ++GS+  PS++KK + LP+ KM N DL R++ SDEI+ V+    K   RA  K NPL 
Sbjct: 267 ESIYGSFEKPSEKKKGYVLPRAKMVNADLARIINSDEIQSVVNPIKKDAKRAVLKKNPLK 326

Query: 380 NNQGDAETQSLRGRAEEESYLRAAQK 303
           N     +       A+  S L  AQ+
Sbjct: 327 NLNVMLKLNPYAKTAKRMSLLAEAQR 352



 Score = 30.3 bits (65), Expect = 1.7
 Identities = 22/62 (35%), Positives = 31/62 (50%)
 Frame = -3

Query: 412 SVLHAN*TRSLTTKAMLKLNPYAAVLKRKAILELRRRKNLKALADAEKSGLKLSKRNPAM 233
           +VL  N  ++L    MLKLNPYA   KR ++L   +R   K    A+K      +   A+
Sbjct: 318 AVLKKNPLKNLNV--MLKLNPYAKTAKRMSLLAEAQRVKAKKEKLAKKRKTVTKEEALAI 375

Query: 232 KA 227
           KA
Sbjct: 376 KA 377


>At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S
           roibosomal protein L4, Arabidopsis thaliana,
           EMBL:CAA79104
          Length = 407

 Score =  115 bits (277), Expect = 3e-26
 Identities = 56/121 (46%), Positives = 76/121 (62%), Gaps = 1/121 (0%)
 Frame = -2

Query: 737 IQRKXPXIIFNQDQGX-TRAFRNIPGVEXXXXXXXXXXXLAPGGHLGRFVIWTQSAFGRL 561
           I RK P ++F  +     +AFRN+PGVE           LAPGGHLGRFVIWT+SAF +L
Sbjct: 208 ISRKGPLVVFGTEGAKIVKAFRNLPGVELCHVERLNLLKLAPGGHLGRFVIWTKSAFEKL 267

Query: 560 DPLFGSWRTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLT 381
           + ++GS+  PS++KK + LP+ KM N DL R++ SDE++ V+        RA  K NPL 
Sbjct: 268 ESIYGSFEKPSEKKKGYVLPRAKMVNADLARIINSDEVQSVVNPIKDGSKRAVLKKNPLK 327

Query: 380 N 378
           N
Sbjct: 328 N 328


>At3g58160.1 68416.m06485 myosin heavy chain, putative similar to
            myosin heavy chain [Arabidopsis thaliana]
            gi|602328|emb|CAA84067.
          Length = 1242

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 16/34 (47%), Positives = 21/34 (61%)
 Frame = -3

Query: 295  LKALADAEKSGLKLSKRNPAMKAEKLRERRRKNI 194
            LKAL   EK    +S+R  A +A +L ERRRK +
Sbjct: 1092 LKALLQVEKQRADISERKCA-EARELGERRRKRL 1124


>At1g30950.1 68414.m03790 unusual floral organ (UFO) / F-box family
           protein (FBX1) E3 ubiquitin ligase SCF complex F-box
           subunit; almost identical to unusual floral organs
           (UFO)GI:4376159 from [Arabidopsis thaliana]
           Landsberg-erecta; one amino acid difference
          Length = 442

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = +1

Query: 94  RPFQLSASYLPSSWEEAGSS*QPASWVS 177
           R ++LS +Y+PS +  +GSS    SWVS
Sbjct: 138 RWYRLSFAYIPSGFYPSGSSGGLVSWVS 165


>At1g04850.1 68414.m00481 ubiquitin-associated (UBA)/TS-N
           domain-containing protein weak similarity to SP|P45974
           Ubiquitin carboxyl-terminal hydrolase 5 (EC 3.1.2.15)
           {Homo sapiens}; contains Pfam profile PF00627: UBA/TS-N
           domain
          Length = 413

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = -3

Query: 340 VLKRKAILELRRRKNLKALADAEKSGLKLSKRNPAMKAEKLR-ERRRK 200
           +L+ K + E+  RK L  L  AEK   K ++     K E+ + ERRRK
Sbjct: 218 LLEAKRMEEVNERKRLMFLRKAEKEEEKRAREKIRQKLEEDKAERRRK 265


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,845,758
Number of Sequences: 28952
Number of extensions: 246674
Number of successful extensions: 673
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 654
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 673
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1950880000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)