Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_O05
         (835 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C2.13c |||conserved eukaryotic protein|Schizosaccharomyces...    24   0.44 
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra...    30   0.47 
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po...    30   0.47 
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo...    29   0.81 
SPAC14C4.12c |||SWIRM domain protein|Schizosaccharomyces pombe|c...    29   1.1  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    28   1.9  
SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    27   3.3  
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce...    27   4.3  

>SPBC19C2.13c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 366

 Score = 24.2 bits (50), Expect(2) = 0.44
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +1

Query: 61  SLIVAH*NTIHNITKIHFNA 120
           SLI A  NTIH +T+ +F++
Sbjct: 260 SLIEARPNTIHGVTESYFSS 279



 Score = 24.2 bits (50), Expect(2) = 0.44
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +1

Query: 100 TKIHFNAYITASICNVCNLMFTDDGGSSWYCATVADP 210
           +K+H  +  T +IC +CNL   +D  +     TV  P
Sbjct: 296 SKLHVPS--TEAICTICNLPMQEDAETWLQKTTVEHP 330


>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
           transcription Rct1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 432

 Score = 29.9 bits (64), Expect = 0.47
 Identities = 16/39 (41%), Positives = 19/39 (48%)
 Frame = -1

Query: 421 RHYKNDEYDRYSSKKKDVYQEKHKSSRSSKDYDRQRYRD 305
           R Y N   DR  S  +   +E H+  RS   YDR  YRD
Sbjct: 327 RQYYNSNRDRKRSSSRSDDREYHR--RSDGRYDRSNYRD 363


>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 365

 Score = 29.9 bits (64), Expect = 0.47
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -1

Query: 430 SHDRHYKNDEYDRYSSKKKDVYQEKHKSSRSSKDY 326
           SHD  Y+ D Y R  S ++D  + +  +   SK Y
Sbjct: 283 SHDDEYRRDAYSRSPSPRRDREENRSPAYEGSKSY 317


>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1065

 Score = 29.1 bits (62), Expect = 0.81
 Identities = 15/54 (27%), Positives = 26/54 (48%)
 Frame = -2

Query: 504 NAEARAPAIPERSTKRREPEKINTNRTIDITKTTNMTDTVRKRRTFTKRNTSRP 343
           N  ARA        +++  EK+NTNRT+       + +  +  ++ T+R   RP
Sbjct: 298 NLRARASFSNFMENEKKLYEKVNTNRTLLRNANLTLNEAQQSVKSLTERQGPRP 351


>SPAC14C4.12c |||SWIRM domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 297

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = -3

Query: 653 HPXVPQHXNNYKSNDKESTSSSQRL 579
           HP +PQH   +K + +E +S++Q +
Sbjct: 154 HPGMPQHNTRFKQSSREFSSNTQAI 178


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 14/56 (25%), Positives = 25/56 (44%)
 Frame = -2

Query: 591  IPATLMMTPAVALATRQKANPNRNARKNGNAEARAPAIPERSTKRREPEKINTNRT 424
            +PA     P+V+       +P+ NA  +  + + A A P R++  R   K   + T
Sbjct: 1239 VPAPSSEAPSVSTPRSSVPSPHSNASPSPTSSSMASAAPARTSVSRSKSKAERHET 1294


>SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 860

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 17/71 (23%), Positives = 32/71 (45%)
 Frame = -2

Query: 561 VALATRQKANPNRNARKNGNAEARAPAIPERSTKRREPEKINTNRTIDITKTTNMTDTVR 382
           + L  RQKA   R   +   A +R  A  +    +    K+N++ TI   +++N+  + +
Sbjct: 512 IMLEARQKAIERRRNEEEELARSRERARKKAEEIKISSSKMNSSPTITNERSSNVESSKK 571

Query: 381 KRRTFTKRNTS 349
               +TK   S
Sbjct: 572 VEAIYTKEPQS 582


>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 604

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = -1

Query: 427 HDRHYKNDEYDRYSSKKKDVYQEKHKSSRSSKDYDRQRYRD 305
           +D + ++  Y    S+ +  Y+E+   S  + DYD +  RD
Sbjct: 171 YDDYSRSPPYSSRHSRSRRRYEERSSRSSRAHDYDYEDLRD 211


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,204,982
Number of Sequences: 5004
Number of extensions: 38072
Number of successful extensions: 136
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 410448950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)