Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_T7_O05
(835 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g53440.1 68418.m06641 expressed protein 32 0.41
At4g09610.1 68417.m01580 gibberellin-regulated protein 2 (GASA2)... 31 0.71
At5g12230.1 68418.m01435 expressed protein 31 0.94
At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit... 31 0.94
At3g03340.1 68416.m00332 LUC7 N_terminus domain-containing prote... 30 2.2
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 30 2.2
At1g75750.1 68414.m08798 gibberellin-regulated protein 1 (GASA1)... 29 2.9
At5g17440.1 68418.m02046 LUC7 N_terminus domain-containing prote... 29 3.8
At3g29075.1 68416.m03637 glycine-rich protein 29 3.8
At4g04030.1 68417.m00573 ovate family protein 65% similar to ova... 29 5.0
At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing ... 29 5.0
At1g32190.1 68414.m03959 expressed protein 29 5.0
At2g18420.1 68415.m02145 gibberellin-responsive protein, putativ... 28 6.6
At1g22690.1 68414.m02835 gibberellin-responsive protein, putativ... 28 6.6
At5g63730.1 68418.m07999 IBR domain-containing protein contains ... 28 8.8
At5g55100.2 68418.m06869 SWAP (Suppressor-of-White-APricot)/surp... 28 8.8
At5g55100.1 68418.m06868 SWAP (Suppressor-of-White-APricot)/surp... 28 8.8
At3g21150.1 68416.m02672 zinc finger (B-box type) family protein... 28 8.8
At3g04160.1 68416.m00440 expressed protein ; expression supporte... 28 8.8
At2g35550.2 68415.m04355 expressed protein 28 8.8
At2g35550.1 68415.m04354 expressed protein 28 8.8
At2g20613.1 68415.m02413 hypothetical protein 28 8.8
>At5g53440.1 68418.m06641 expressed protein
Length = 1181
Score = 32.3 bits (70), Expect = 0.41
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = -1
Query: 427 HDRHYKNDEYDRYSSKKKDVYQEKHKSSRSSKDYDRQRYRDGSEEE 290
HDR++ D +DR S+ +D E+ ++ KD R Y DG +
Sbjct: 353 HDRYHDRD-WDRDRSRDRDRDHERDRTHDREKDRSRDYYHDGKRSK 397
>At4g09610.1 68417.m01580 gibberellin-regulated protein 2 (GASA2) /
gibberellin-responsive protein 2 identical to SP|P46688
Gibberellin-regulated protein 2 precursor {Arabidopsis
thaliana}
Length = 99
Score = 31.5 bits (68), Expect = 0.71
Identities = 15/39 (38%), Positives = 18/39 (46%)
Frame = +1
Query: 283 CPSPPPTRLCTFACRNPCCSWTTCVSLGKRPSFSNCICH 399
C T+LC AC N CCS CV G + C C+
Sbjct: 49 CSKSSRTKLCLRAC-NSCCSRCNCVPPGTSGNTHLCPCY 86
>At5g12230.1 68418.m01435 expressed protein
Length = 221
Score = 31.1 bits (67), Expect = 0.94
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = -1
Query: 430 SHDRHYKNDEY-DRYSSKKKDVYQEKHKSSRSSKDYDRQRYRDGSEEE 290
S DR K+ ++ DR K ++ + KHK SKD D+ + RD +++
Sbjct: 122 SKDRDRKHKKHKDRDKDKDREHKKHKHKHKDRSKDKDKDKDRDRKKDK 169
Score = 29.5 bits (63), Expect = 2.9
Identities = 13/45 (28%), Positives = 21/45 (46%)
Frame = -1
Query: 427 HDRHYKNDEYDRYSSKKKDVYQEKHKSSRSSKDYDRQRYRDGSEE 293
H K+ + D+ +KKD S K +D++R DG E+
Sbjct: 150 HKDRSKDKDKDKDRDRKKDKNGHHDSGDHSKKHHDKKRKHDGDED 194
>At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit GB:CAA77136 from [Nicotiana plumbaginifolia]
Length = 589
Score = 31.1 bits (67), Expect = 0.94
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Frame = -1
Query: 424 DRHYKNDEYDRYS--SKKKDVYQEKHKSSRSSKDYDRQRYRDGSEE 293
DRH+++ DR S+K+D + H R S+D DR+R RD E
Sbjct: 101 DRHHRDRHRDRSRERSEKRDDLDDDHH--RRSRDRDRRRSRDRDRE 144
Score = 27.9 bits (59), Expect = 8.8
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -1
Query: 412 KNDEYDRYSSKKKDVYQEKHKSSRSSKDYDRQRYRD 305
K++E R KD +EK + S+D DR++ RD
Sbjct: 52 KDNENGRDKDGNKDRDREKDRDREKSRDRDREKSRD 87
>At3g03340.1 68416.m00332 LUC7 N_terminus domain-containing protein
contains Pfam domain PF03194: LUC7 N_terminus
Length = 402
Score = 29.9 bits (64), Expect = 2.2
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = -1
Query: 427 HDRHYKND-EYDRYSSKKKDVYQEKHKSSRSSKDYDRQR 314
HDR + D +YDR S+ + + + +S +DYDR R
Sbjct: 359 HDRDREQDRDYDRSHSRSRRRSRSRSRSRDRPRDYDRHR 397
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 29.9 bits (64), Expect = 2.2
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = -1
Query: 424 DRHYKNDEYDRYSSKKKDVYQEKHKSSRSSKDYDRQRYRDGSEEE 290
+R ++ E DR +K+D +E+ K ++ DR+R R+ EE
Sbjct: 120 ERGHREHERDRGKDRKRDREREERKDKEREREKDRER-REREREE 163
>At1g75750.1 68414.m08798 gibberellin-regulated protein 1 (GASA1) /
gibberellin-responsive protein 1 identical to SP|P46689
Gibberellin-regulated protein 1 precursor {Arabidopsis
thaliana}; supporting cDNA
gi|887938|gb|U11766.1|ATU11766
Length = 98
Score = 29.5 bits (63), Expect = 2.9
Identities = 15/45 (33%), Positives = 20/45 (44%)
Frame = +1
Query: 265 TAWLASCPSPPPTRLCTFACRNPCCSWTTCVSLGKRPSFSNCICH 399
+A +A C RLC AC CC CV G ++ C C+
Sbjct: 42 SACVARCRLSRRPRLCHRAC-GTCCYRCNCVPPGTYGNYDKCQCY 85
>At5g17440.1 68418.m02046 LUC7 N_terminus domain-containing protein
contains Pfam domain PF03194: Protein of unknown
function, DUF259
Length = 404
Score = 29.1 bits (62), Expect = 3.8
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 5/45 (11%)
Frame = -1
Query: 424 DRHYKNDEYDRYSSKKKDVYQEKHKSSRS-----SKDYDRQRYRD 305
DRH+ + E+DR ++ + +SSRS +D+DR+R D
Sbjct: 358 DRHHDHREHDRNYNQSRGYDSRSRRSSRSRSRERPRDHDRRRRHD 402
>At3g29075.1 68416.m03637 glycine-rich protein
Length = 294
Score = 29.1 bits (62), Expect = 3.8
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 6/52 (11%)
Frame = -1
Query: 427 HDRHYKNDEYDRYSSKKKDVY--QEKHKSSRSSKDYDRQR----YRDGSEEE 290
+ H+ +D+YD KKKD EK K + D D ++ Y D +E+
Sbjct: 193 YKEHHDDDDYDEKKKKKKDYNDDDEKKKKKHYNDDDDEKKKKHNYNDDDDEK 244
>At4g04030.1 68417.m00573 ovate family protein 65% similar to ovate
protein (GI:23429649) [Lycopersicon esculentum];
contains TIGRFAM TIGR01568 : uncharacterized
plant-specific domain TIGR01568
Length = 411
Score = 28.7 bits (61), Expect = 5.0
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = -3
Query: 383 EKEGRLPRETQVVQEQQGLRQAKVQRRVGGGEGQEAS 273
EK ++ RETQ Q+ +RQ K++RR EG +S
Sbjct: 303 EKLEQMIRETQEATHQEKIRQQKMRRRRRRSEGSISS 339
>At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing
protein
Length = 561
Score = 28.7 bits (61), Expect = 5.0
Identities = 11/32 (34%), Positives = 21/32 (65%)
Frame = -1
Query: 391 YSSKKKDVYQEKHKSSRSSKDYDRQRYRDGSE 296
+ S+ +D +++H+SSR +D DR++ D E
Sbjct: 68 HRSRSRDRERDRHRSSREHRDRDREKDVDKEE 99
>At1g32190.1 68414.m03959 expressed protein
Length = 422
Score = 28.7 bits (61), Expect = 5.0
Identities = 14/48 (29%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
Frame = +1
Query: 232 TCRGRGAAGSATAWLASCPSPPPTRLC-TFACRNPCCSWTTCVSLGKR 372
+C G+ + W C P T C + C + C SW C G+R
Sbjct: 361 SCFGKPKCPKCSCW--KCLKCPDTECCRSSCCCSGCFSWLCCCGGGRR 406
>At2g18420.1 68415.m02145 gibberellin-responsive protein, putative
similar to SP|P46689 Gibberellin-regulated protein 1
precursor {Arabidopsis thaliana}; contains Pfam profile
PF02704: Gibberellin regulated protein
Length = 88
Score = 28.3 bits (60), Expect = 6.6
Identities = 12/42 (28%), Positives = 18/42 (42%)
Frame = +1
Query: 274 LASCPSPPPTRLCTFACRNPCCSWTTCVSLGKRPSFSNCICH 399
+ C LC AC CC+ CV+ G ++ C C+
Sbjct: 25 MVRCSLSSRPNLCHRAC-GTCCARCNCVAPGTSGNYDKCPCY 65
>At1g22690.1 68414.m02835 gibberellin-responsive protein, putative
similar to SP|P46688 Gibberellin-regulated protein 2
precursor {Arabidopsis thaliana}; contains Pfam profile
PF02704: Gibberellin regulated protein
Length = 119
Score = 28.3 bits (60), Expect = 6.6
Identities = 17/62 (27%), Positives = 25/62 (40%)
Frame = +1
Query: 214 TAHTYRTCRGRGAAGSATAWLASCPSPPPTRLCTFACRNPCCSWTTCVSLGKRPSFSNCI 393
TA RT R A C ++C AC + CC+ CV G + ++C
Sbjct: 46 TAAFKRTYHHRPRINCGHACARRCSKTSRKKVCHRACGS-CCAKCQCVPPGTSGNTASCP 104
Query: 394 CH 399
C+
Sbjct: 105 CY 106
>At5g63730.1 68418.m07999 IBR domain-containing protein contains
similarity to Swiss-Prot:Q94981 ariadne-1 protein
(Ari-1) [Drosophila melanogaster] and Pfam:PF01485 IBR
domain
Length = 506
Score = 27.9 bits (59), Expect = 8.8
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +1
Query: 298 PTRLCTFACRNPCCSWTTCVSLGKRPSFSNCICHIRRFCN 417
PT+ T C + CS + K P F C+C + RFC+
Sbjct: 250 PTKTKTVTCPHCLCSLESDT---KMPQFLTCVCRL-RFCS 285
>At5g55100.2 68418.m06869 SWAP (Suppressor-of-White-APricot)/surp
domain-containing protein contains Pfam domain PF01805:
Surp module
Length = 844
Score = 27.9 bits (59), Expect = 8.8
Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 7/54 (12%)
Frame = -1
Query: 430 SHDRHYKNDEYD-------RYSSKKKDVYQEKHKSSRSSKDYDRQRYRDGSEEE 290
S DRH D D R S KDV K K S + +++RD S++E
Sbjct: 701 SSDRHELYDSSDNEGEHRHRSSKHSKDVDYSKDKRSHHHRSRKHEKHRDSSDDE 754
>At5g55100.1 68418.m06868 SWAP (Suppressor-of-White-APricot)/surp
domain-containing protein contains Pfam domain PF01805:
Surp module
Length = 843
Score = 27.9 bits (59), Expect = 8.8
Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 7/54 (12%)
Frame = -1
Query: 430 SHDRHYKNDEYD-------RYSSKKKDVYQEKHKSSRSSKDYDRQRYRDGSEEE 290
S DRH D D R S KDV K K S + +++RD S++E
Sbjct: 701 SSDRHELYDSSDNEGEHRHRSSKHSKDVDYSKDKRSHHHRSRKHEKHRDSSDDE 754
>At3g21150.1 68416.m02672 zinc finger (B-box type) family protein
contains Pfam profile:PF01760 CONSTANS family zinc
finger
Length = 225
Score = 27.9 bits (59), Expect = 8.8
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +1
Query: 286 PSPPPTRLCTFACRNPCCSWTTCVS 360
P PP T C+ + + CCS CVS
Sbjct: 64 PWPPRTTCCSESSSSSCCSSLDCVS 88
>At3g04160.1 68416.m00440 expressed protein ; expression supported
by MPSS
Length = 712
Score = 27.9 bits (59), Expect = 8.8
Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Frame = -1
Query: 424 DRHYKNDEYDRYSSKKKDVYQE-KHKSSRSSKDYDRQ--RYRDGSEEE 290
D+ ++DEYD SS+++ ++ KH R K DR+ ++ D ++E
Sbjct: 606 DKVKRHDEYDSGSSQRQQSHRSYKHSDRRDDKLRDRRKDKHNDRRDDE 653
>At2g35550.2 68415.m04355 expressed protein
Length = 226
Score = 27.9 bits (59), Expect = 8.8
Identities = 18/43 (41%), Positives = 22/43 (51%)
Frame = -2
Query: 540 KANPNRNARKNGNAEARAPAIPERSTKRREPEKINTNRTIDIT 412
K P R R N + P+IPE TKR EK N + IDI+
Sbjct: 89 KPKPQRKKRSVSNKSKKTPSIPE--TKR---EKKNLDINIDIS 126
>At2g35550.1 68415.m04354 expressed protein
Length = 271
Score = 27.9 bits (59), Expect = 8.8
Identities = 18/43 (41%), Positives = 22/43 (51%)
Frame = -2
Query: 540 KANPNRNARKNGNAEARAPAIPERSTKRREPEKINTNRTIDIT 412
K P R R N + P+IPE TKR EK N + IDI+
Sbjct: 134 KPKPQRKKRSVSNKSKKTPSIPE--TKR---EKKNLDINIDIS 171
>At2g20613.1 68415.m02413 hypothetical protein
Length = 135
Score = 27.9 bits (59), Expect = 8.8
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = -3
Query: 413 QKRRI*QIQFEKEGRLPRETQVVQEQQGLRQAKVQRRVGGGEGQEA 276
Q+ + +I + + RET Q +++AK ++ GGG G+EA
Sbjct: 59 QESKSVKISEKSVAKRSRETHEAQASADVKKAKKVKKRGGGGGEEA 104
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,596,103
Number of Sequences: 28952
Number of extensions: 205860
Number of successful extensions: 837
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 790
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 836
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1921616800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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