Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_O04
         (897 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23G3.10c |ssr3||SWI/SNF and RSC complex subunit Ssr3|Schizos...    77   3e-15
SPAC18G6.15 |mal3||EB1 family Mal3|Schizosaccharomyces pombe|chr...    30   0.39 
SPAC25H1.06 |||histone acetyltransferase complex subunit |Schizo...    29   1.2  
SPBP4H10.06c |cut14|smc2, smc2|condensin subunit Cut14|Schizosac...    27   4.8  
SPCC1795.01c |mad3|SPCC895.02|mitotic spindle checkpoint protein...    27   4.8  
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    26   6.3  
SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase protein...    26   8.4  

>SPAC23G3.10c |ssr3||SWI/SNF and RSC complex subunit
           Ssr3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 425

 Score = 77.4 bits (182), Expect = 3e-15
 Identities = 34/109 (31%), Positives = 60/109 (55%)
 Frame = -3

Query: 445 HDAKQTACYDIDVEVDDTLKAQMNNFLLSTANQQEIQGLDSKIHETVDTINQLKTNREFF 266
           H  ++   +DI +  +D   +Q+ +FL +  +Q +I+ +D K+ E +  I   ++  +F 
Sbjct: 293 HTVEKVTIFDIRINTEDPRHSQIRSFLATMMSQDKIRSIDDKLTELIQAITYSQSKYDFM 352

Query: 265 LSFSKDPQQFIQKWLVSQSRDLKSMSGGAGGNPEEERRAQFYCAGWAGE 119
             FS+ P +FI +W+ SQSRDL+ +  G   N  E+R A +Y   W  E
Sbjct: 353 KKFSESPIEFINEWIESQSRDLEIVLDGTNMNYAEKRSADYYQQPWVHE 401


>SPAC18G6.15 |mal3||EB1 family Mal3|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 308

 Score = 30.3 bits (65), Expect = 0.39
 Identities = 12/53 (22%), Positives = 32/53 (60%)
 Frame = -3

Query: 349 QQEIQGLDSKIHETVDTINQLKTNREFFLSFSKDPQQFIQKWLVSQSRDLKSM 191
           QQ+I  L+++++E  +T+  L+  R+F+ +  ++ +  +Q  L +    +++M
Sbjct: 178 QQQITSLETQLYEVNETMFGLERERDFYFNKLREIEILVQTHLTTSPMSMENM 230


>SPAC25H1.06 |||histone acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 408

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = +3

Query: 264 KKNSRFVFNWLMVSTVSWILESRPWISCWLAVLSR 368
           KKNS+ ++N L+  T++W   S  W+S   ++  +
Sbjct: 28  KKNSKHLYNLLITRTLTWPSLSIQWLSAMESITEK 62


>SPBP4H10.06c |cut14|smc2, smc2|condensin subunit
           Cut14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1172

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -3

Query: 364 LSTANQQEIQGLDSKIHETVDTINQLKTNRE 272
           LST    E  G   K+HE  DT+N  K  +E
Sbjct: 388 LSTTEGHET-GYSRKLHEARDTLNDFKAEKE 417


>SPCC1795.01c |mad3|SPCC895.02|mitotic spindle checkpoint protein
           Mad3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 310

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 16/45 (35%), Positives = 21/45 (46%)
 Frame = -3

Query: 355 ANQQEIQGLDSKIHETVDTINQLKTNREFFLSFSKDPQQFIQKWL 221
           AN  E +GL  K  E      ++K     FL F +  QQF  +WL
Sbjct: 157 ANYFESRGLFQKADEVYQKGKRMKAKP--FLRFQQKYQQFTHRWL 199


>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 14/60 (23%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
 Frame = -3

Query: 415  IDVEVDDTLKAQMNNFLLSTANQQEIQGLDSKIH----ETVDTINQLKTNREFFLSFSKD 248
            + +++ D L A  NN++        +  LD  +H    E++  +N+   +R   LS  +D
Sbjct: 1571 LSMDLQDALNAYFNNYVSEENRSHTVLVLDKSVHQFPWESLPCLNRQSVSRVPSLSILRD 1630


>SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 758

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = -3

Query: 361 STANQQEIQGLDSKIHETVDTINQLKTNREFFLSFSK 251
           STA+++ I  L  + HE++  ++  K N+  F  FS+
Sbjct: 113 STADEKLISQLGEEAHESLLKVHIEKANKHLFSLFSR 149


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,075,903
Number of Sequences: 5004
Number of extensions: 31046
Number of successful extensions: 123
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)