Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_O04
         (897 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0689 + 18746735-18748296,18748401-18748485                       88   1e-17
11_03_0216 + 11821726-11821860,11823217-11823286,11823704-118238...    31   0.94 
03_01_0340 - 2680860-2682197                                           29   3.8  
05_01_0033 + 220125-220190,220274-224445,224863-224949,225048-22...    29   5.0  
06_01_0757 + 5659081-5659605,5659694-5659919,5659994-5660333,566...    29   6.6  
03_01_0392 + 3051469-3051876,3052414-3052832,3053992-3054061,305...    29   6.6  

>04_03_0689 + 18746735-18748296,18748401-18748485
          Length = 548

 Score = 87.8 bits (208), Expect = 1e-17
 Identities = 45/119 (37%), Positives = 69/119 (57%)
 Frame = -3

Query: 484 PSSSNHVIAVEPPHDAKQTACYDIDVEVDDTLKAQMNNFLLSTANQQEIQGLDSKIHETV 305
           P +  H I +   + A  +ACYD+ V+V   L+ +M+ FL +T   ++I+  D  I  ++
Sbjct: 404 PINLEHKIKLSG-NGAHASACYDVIVDVPFPLQKEMSAFLANTEKHKDIEACDEVISASI 462

Query: 304 DTINQLKTNREFFLSFSKDPQQFIQKWLVSQSRDLKSMSGGAGGNPEEERRAQFYCAGW 128
             I++ +  R FFL FS+ P +FI   + SQS+DLK ++G A  N E ERRA FY   W
Sbjct: 463 KKIHEHRRRRAFFLGFSQSPVEFINALIASQSKDLKLIAGEANRNIERERRADFYNQPW 521


>11_03_0216 +
           11821726-11821860,11823217-11823286,11823704-11823861,
           11824304-11824479,11824564-11824612,11825293-11825430
          Length = 241

 Score = 31.5 bits (68), Expect = 0.94
 Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = -3

Query: 289 LKTNREFFLSFSKDPQQFIQKWLVSQSR-DLKSMSGGAGGNPEEERRAQFYCAGWAG 122
           + T R F  + S   Q +++  L    R D+  +SGG+ G+ + E      C+G AG
Sbjct: 146 INTTRPFMRNVSAVDQSWVKPILKKLERLDMNKLSGGSSGSKDPEPLEDKQCSGGAG 202


>03_01_0340 - 2680860-2682197
          Length = 445

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -2

Query: 365 AQHRQPAGDPRPRLQDPRDCGHHQPVENKP 276
           ++ ++P   PRPR  DP   G +  VE KP
Sbjct: 155 SRRKEPPRPPRPRPVDPDGAGDNAQVERKP 184


>05_01_0033 + 220125-220190,220274-224445,224863-224949,225048-225084,
            225296-225356,225666-226918
          Length = 1891

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 30/109 (27%), Positives = 52/109 (47%), Gaps = 6/109 (5%)
 Frame = -3

Query: 436  KQTACYDIDVEVDDTLK-----AQMNNFLLSTANQQE-IQGLDSKIHETVDTINQLKTNR 275
            K TA  DI++ VD  L      + + +    T+ Q E +Q L S +    + +   +T+ 
Sbjct: 1066 KVTASPDIELVVDGRLHLKEKTSDLRDIWEETSFQLEGLQRLKSCVRLEKEGLKH-RTSP 1124

Query: 274  EFFLSFSKDPQQFIQKWLVSQSRDLKSMSGGAGGNPEEERRAQFYCAGW 128
             + LSF+  P+   +K L + S+   ++    G N + E  A FY AG+
Sbjct: 1125 SWSLSFT--PKFTDEKLLTASSKPKVAILREEGSNGDREMAAAFYAAGF 1171


>06_01_0757 +
           5659081-5659605,5659694-5659919,5659994-5660333,
           5660677-5661025,5661121-5661723
          Length = 680

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 12/62 (19%), Positives = 33/62 (53%)
 Frame = -3

Query: 379 MNNFLLSTANQQEIQGLDSKIHETVDTINQLKTNREFFLSFSKDPQQFIQKWLVSQSRDL 200
           ++N++L   + + +    + + +  +  ++   +RE ++S+S D  QF+ +W +   +D 
Sbjct: 345 LHNWILENGSDEFVNDEKTCMGKRTEGTSEEGGSREKYISWSDDATQFMLEWYIELCKDK 404

Query: 199 KS 194
            S
Sbjct: 405 PS 406


>03_01_0392 + 3051469-3051876,3052414-3052832,3053992-3054061,
            3054923-3055016,3056587-3056907,3057298-3057403,
            3058807-3058887,3059336-3059402,3059715-3060239,
            3060328-3060553,3060628-3060967,3061311-3061659,
            3061755-3062357
          Length = 1202

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 12/62 (19%), Positives = 33/62 (53%)
 Frame = -3

Query: 379  MNNFLLSTANQQEIQGLDSKIHETVDTINQLKTNREFFLSFSKDPQQFIQKWLVSQSRDL 200
            ++N++L   + + +    + + +  +  ++   +RE ++S+S D  QF+ +W +   +D 
Sbjct: 867  LHNWILENGSDEFVNDEKTCMGKRTEGTSEEGGSREKYISWSDDATQFMLEWYIELRKDK 926

Query: 199  KS 194
             S
Sbjct: 927  PS 928


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,707,946
Number of Sequences: 37544
Number of extensions: 318526
Number of successful extensions: 1163
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1163
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2530383840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)