Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_O04
         (897 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26426| Best HMM Match : No HMM Matches (HMM E-Value=.)              90   2e-18
SB_9982| Best HMM Match : No HMM Matches (HMM E-Value=.)               66   3e-11
SB_31478| Best HMM Match : Extensin_2 (HMM E-Value=1.3)                30   2.9  
SB_37798| Best HMM Match : Sec15 (HMM E-Value=1.8)                     29   6.7  
SB_32378| Best HMM Match : DUF591 (HMM E-Value=1.6)                    23   7.7  
SB_47927| Best HMM Match : TSP_1 (HMM E-Value=9.5e-34)                 28   8.9  

>SB_26426| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 105

 Score = 90.2 bits (214), Expect = 2e-18
 Identities = 42/67 (62%), Positives = 51/67 (76%)
 Frame = -3

Query: 319 IHETVDTINQLKTNREFFLSFSKDPQQFIQKWLVSQSRDLKSMSGGAGGNPEEERRAQFY 140
           I+ETV+TIN LK NREFFL F++DPQ FI +W+ SQS+DLK M+    GNPEEERRA FY
Sbjct: 1   IYETVETINSLKINREFFLGFARDPQDFITQWIQSQSQDLKVMT-DVVGNPEEERRADFY 59

Query: 139 CAGWAGE 119
              W+ E
Sbjct: 60  YLPWSQE 66


>SB_9982| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 252

 Score = 66.5 bits (155), Expect = 3e-11
 Identities = 32/55 (58%), Positives = 42/55 (76%)
 Frame = -3

Query: 484 PSSSNHVIAVEPPHDAKQTACYDIDVEVDDTLKAQMNNFLLSTANQQEIQGLDSK 320
           P   +H+I+ + P + K+  CYDIDVEVDDTLKAQM++FLLSTA+Q EI   D+K
Sbjct: 199 PIVIHHLISKDTPEN-KRVTCYDIDVEVDDTLKAQMHSFLLSTASQNEIATYDNK 252


>SB_31478| Best HMM Match : Extensin_2 (HMM E-Value=1.3)
          Length = 515

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -2

Query: 353 QPAGDPRPRLQDPRDCGHHQPVENKPR 273
           QPA +PRP  QDPR     +P   +PR
Sbjct: 390 QPAHNPRPGPQDPRGPQDRRPPNEQPR 416


>SB_37798| Best HMM Match : Sec15 (HMM E-Value=1.8)
          Length = 1007

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 8/74 (10%)
 Frame = +3

Query: 285 FNWLMVSTVSWI-LESRPWISC----WLAVLSRKLFICALXXXXXXXXXXXQAVCLASC- 446
           ++W+ V+T SW+ + +  W+S     W++V +                   Q  CL+SC 
Sbjct: 291 YSWVSVATYSWVSVATYNWVSVATDNWVSVATYSCISLNDTCRFIVQGNVAQTACLSSCK 350

Query: 447 --GGSTAMTWFDDD 482
              GS      DDD
Sbjct: 351 HLAGSMRTLLLDDD 364


>SB_32378| Best HMM Match : DUF591 (HMM E-Value=1.6)
          Length = 457

 Score = 23.4 bits (48), Expect(2) = 7.7
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = -3

Query: 418 DIDVEVDDTLKA 383
           D+DV++DDTL A
Sbjct: 3   DVDVDIDDTLPA 14



 Score = 23.4 bits (48), Expect(2) = 7.7
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -3

Query: 361 STANQQEIQGLDSKIHETVDTINQLKTNRE 272
           +T   QE+QG+ +   ET+D  N  ++ R+
Sbjct: 51  NTERVQELQGVVATDRETIDDPNTSESRRQ 80


>SB_47927| Best HMM Match : TSP_1 (HMM E-Value=9.5e-34)
          Length = 512

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -3

Query: 256 SKDPQQFIQKWLVSQSRDLKSMSGGAGGNPEEE 158
           +K  Q  I++W+VS  + LK  +   GG  EE+
Sbjct: 77  AKSQQADIKEWIVSLEKQLKDATSICGGESEEK 109


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,964,255
Number of Sequences: 59808
Number of extensions: 275283
Number of successful extensions: 1118
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 951
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1099
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2574115416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)