Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_O04
         (897 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g14170.1 68418.m01657 SWIB complex BAF60b domain-containing p...    81   7e-16
At3g01890.1 68416.m00135 SWIB complex BAF60b domain-containing p...    75   8e-14
At3g16030.1 68416.m02027 lectin protein kinase family protein co...    29   5.5  
At4g08455.1 68417.m01394 BTB/POZ domain-containing protein Inter...    28   9.7  
At1g20960.1 68414.m02624 U5 small nuclear ribonucleoprotein heli...    28   9.7  

>At5g14170.1 68418.m01657 SWIB complex BAF60b domain-containing
           protein similar to brahma associated protein 60 kDa
           [Drosophila melanogaster] GI:3378134, SWI/SNF-related,
           matrix-associated, actin-dependent regulator of
           chromatin D1 [Homo sapiens] GI:4566530; contains Pfam
           profile PF02201: BAF60b domain of the SWIB complex
          Length = 534

 Score = 81.4 bits (192), Expect = 7e-16
 Identities = 38/101 (37%), Positives = 59/101 (58%)
 Frame = -3

Query: 430 TACYDIDVEVDDTLKAQMNNFLLSTANQQEIQGLDSKIHETVDTINQLKTNREFFLSFSK 251
           +ACYD+ V+V   ++  +NN L +    +EI+  D  I   +  I++ +  R FFL FS+
Sbjct: 411 SACYDVLVDVPFPIQRDLNNLLANAEKNKEIEACDEAICAAIRKIHEHRRRRAFFLGFSQ 470

Query: 250 DPQQFIQKWLVSQSRDLKSMSGGAGGNPEEERRAQFYCAGW 128
            P +FI   + SQS+DLK ++G A  N E ERR+ F+   W
Sbjct: 471 SPVEFINALIESQSKDLKVVAGEASRNAERERRSDFFNQPW 511


>At3g01890.1 68416.m00135 SWIB complex BAF60b domain-containing
           protein similar to brahma associated protein 60 kDa
           [Drosophila melanogaster] GI:3378134, SWI/SNF-related,
           matrix-associated, actin-dependent regulator of
           chromatin D1 [Homo sapiens] GI:4566530; contains Pfam
           profile PF02201: BAF60b domain of the SWIB complex
          Length = 458

 Score = 74.5 bits (175), Expect = 8e-14
 Identities = 33/101 (32%), Positives = 60/101 (59%)
 Frame = -3

Query: 430 TACYDIDVEVDDTLKAQMNNFLLSTANQQEIQGLDSKIHETVDTINQLKTNREFFLSFSK 251
           +ACYD+ V++   ++ +++N L +    +EI+  D  I   +  I++ +  R FFL FS+
Sbjct: 342 SACYDVLVDIPAPVQTELSNLLANPEKNKEIEACDEAICGAIRKIHEHRRRRAFFLGFSQ 401

Query: 250 DPQQFIQKWLVSQSRDLKSMSGGAGGNPEEERRAQFYCAGW 128
            P +F    + SQ++DLK ++G A  N E+E R++F+   W
Sbjct: 402 SPVEFTNALMESQTKDLKLVAGEASRNAEKEGRSEFFNQPW 442


>At3g16030.1 68416.m02027 lectin protein kinase family protein
           contains Pfam domains PF00069: Protein kinase domain and
           PF01453: Lectin (probable mannose binding)
          Length = 850

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 3/29 (10%)
 Frame = -1

Query: 96  RACWPAA---ATSTWRCAPRSFNYTLTRQ 19
           R C PA     T +W C+P  F YT TR+
Sbjct: 299 RNCVPARYKEVTGSWDCSPFGFGYTYTRK 327


>At4g08455.1 68417.m01394 BTB/POZ domain-containing protein Interpro
           IPR000210/ PS50097: BTBB/POZ domain; similar to POZ 56
           protein (GI:17483747) [Mus musculus]
          Length = 243

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 11/50 (22%), Positives = 27/50 (54%)
 Frame = -3

Query: 331 LDSKIHETVDTINQLKTNREFFLSFSKDPQQFIQKWLVSQSRDLKSMSGG 182
           LD+ + + V+ +++L    E+     KDP+  ++ +    S+ + + +GG
Sbjct: 187 LDAALSQIVENMDKLTKREEYMELVEKDPRLIVEIYEAYLSKQVNTAAGG 236


>At1g20960.1 68414.m02624 U5 small nuclear ribonucleoprotein
           helicase, putative similar to SP|O75643 U5 small nuclear
           ribonucleoprotein 200 kDa helicase {Homo sapiens};
           contains Pfam profiles PF00270: DEAD/DEAH box helicase,
           PF00271: Helicase conserved C-terminal domain, PF02889:
           Sec63 domain
          Length = 2171

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 19/74 (25%), Positives = 39/74 (52%)
 Frame = -3

Query: 349 QQEIQGLDSKIHETVDTINQLKTNREFFLSFSKDPQQFIQKWLVSQSRDLKSMSGGAGGN 170
           ++E++GL  ++   V+   QL   R    + +K+ ++ +QK +  ++R LK  +GG GG 
Sbjct: 360 EEEMRGLGPELTAIVE---QLHATR----ATAKEREENLQKSINEEARRLKDETGGDGGR 412

Query: 169 PEEERRAQFYCAGW 128
              +   +   +GW
Sbjct: 413 GRRDVADRDSESGW 426


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,903,434
Number of Sequences: 28952
Number of extensions: 203700
Number of successful extensions: 608
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 590
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 607
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2110422216
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)