Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_T7_O03
(791 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 258 5e-70
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 132 6e-32
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 118 1e-27
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 111 1e-25
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 94 2e-20
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 77 3e-15
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 71 2e-13
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 70 4e-13
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 44 3e-05
SPAC10F6.02c |prp22||ATP-dependent RNA helicase Prp22|Schizosacc... 28 1.8
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 27 3.1
SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha... 26 7.1
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch... 26 7.1
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 258 bits (633), Expect = 5e-70
Identities = 119/134 (88%), Positives = 125/134 (93%)
Frame = -1
Query: 698 LPDGQVITIGNERFRCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSG 519
LPDGQVITIGNERFR PEALFQPS LG+E GIHE TYNSIMKCDVDIRKDLY N V+SG
Sbjct: 242 LPDGQVITIGNERFRAPEALFQPSALGLENAGIHEATYNSIMKCDVDIRKDLYGNVVMSG 301
Query: 518 GTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQE 339
GTTMYPGIADRMQKEI ALAPS+MK+KI+APPERKYSVWIGGSILASLSTFQQMWISKQE
Sbjct: 302 GTTMYPGIADRMQKEIQALAPSSMKVKIVAPPERKYSVWIGGSILASLSTFQQMWISKQE 361
Query: 338 YDESGPPIVHRKCF 297
YDESGP IV+RKCF
Sbjct: 362 YDESGPGIVYRKCF 375
Score = 32.7 bits (71), Expect = 0.062
Identities = 14/21 (66%), Positives = 16/21 (76%)
Frame = -2
Query: 754 FEQEMATXASSSSLEKXYDFP 692
FEQE+ T A SSSLEK Y+ P
Sbjct: 223 FEQELQTAAQSSSLEKSYELP 243
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 132 bits (319), Expect = 6e-32
Identities = 60/133 (45%), Positives = 86/133 (64%)
Frame = -1
Query: 701 RLPDGQVITIGNERFRCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLS 522
+LPD Q IT+G E F PE LF P +G EA G+H + SI+ D+D+R LY+N VLS
Sbjct: 246 QLPDNQTITLGTECFSAPEVLFNPEMMGSEASGLHIQLFKSILLSDIDLRSTLYSNIVLS 305
Query: 521 GGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQ 342
GG+T+ G +R E+ A++ ++KI A PER ++ W+GGSILASLSTF+++ I+ +
Sbjct: 306 GGSTLLRGFGERFISELRAISGKKNQVKIYASPERMHNAWLGGSILASLSTFRRLLITSE 365
Query: 341 EYDESGPPIVHRK 303
EY I R+
Sbjct: 366 EYKNDQNVIFRRR 378
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 118 bits (284), Expect = 1e-27
Identities = 61/137 (44%), Positives = 89/137 (64%), Gaps = 12/137 (8%)
Frame = -1
Query: 698 LPDGQVITIGNERFRCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSG 519
LPDG+VI +G+ER+ CPE LFQP +G E G+ E +++I DVDIRK LY VLSG
Sbjct: 242 LPDGRVIKVGSERYECPECLFQPHLVGSEQPGLSEFIFDTIQAADVDIRKYLYRAIVLSG 301
Query: 518 GTTMYPGIADRMQKEITAL--------APSTM---KIKIIAPPERKYSVWIGGSILAS-L 375
G++MY G+ R++KEI L P+ + K+KI P R+++V+IGG++LA +
Sbjct: 302 GSSMYAGLPSRLEKEIKQLWFERVLHGDPARLPNFKVKIEDAPRRRHAVFIGGAVLADIM 361
Query: 374 STFQQMWISKQEYDESG 324
+ MW+SK E++E G
Sbjct: 362 AQNDHMWVSKAEWEEYG 378
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 111 bits (266), Expect = 1e-25
Identities = 58/135 (42%), Positives = 77/135 (57%), Gaps = 11/135 (8%)
Frame = -1
Query: 695 PDGQVITIGNERFRCPEALFQPSFLGMEAC---------GIHETTYNSIMKCDVDIRKDL 543
PDG G ERFR E LF PSF + G+HE Y SI+ CD ++R L
Sbjct: 284 PDGVTHKFGQERFRISEILFNPSFSASRSAETTPPQGSVGLHELVYQSILACDSELRSPL 343
Query: 542 YANTVLSGGTTMYPGIADRMQKEITALAP-STMKIKII-APPERKYSVWIGGSILASLST 369
N V++GGT++ PG+++R+Q E+ LA S + + +VW GGSILASL
Sbjct: 344 LNNIVVTGGTSLIPGLSERLQAEVQRLATGSRINVHTAETASATSNAVWFGGSILASLDN 403
Query: 368 FQQMWISKQEYDESG 324
FQ +W+SKQEYDE G
Sbjct: 404 FQHLWVSKQEYDEVG 418
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 94.3 bits (224), Expect = 2e-20
Identities = 47/108 (43%), Positives = 70/108 (64%), Gaps = 6/108 (5%)
Frame = -1
Query: 605 GIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAP 426
GI + N I +CDVDIR L N ++ GGT++ G + R+Q E++ L P + ++KI A
Sbjct: 326 GIPQLFQNCISECDVDIRASLLNNVIVCGGTSLMQGFSLRLQNELSKLYPGS-RLKIHAS 384
Query: 425 P---ERKYSVWIGGSILASLSTFQQMWISKQEYDESGP---PIVHRKC 300
ER Y+ W+GGSIL+SL TF Q+WIS+QEY+E G ++ ++C
Sbjct: 385 GHVVERSYASWLGGSILSSLGTFHQLWISRQEYEEHGSDRLALIEKRC 432
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 77.0 bits (181), Expect = 3e-15
Identities = 43/137 (31%), Positives = 68/137 (49%)
Frame = -1
Query: 713 REVLRLPDGQVITIGNERFRCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYAN 534
R++ + + QV+ + NERF PE LF PS + + GI E S+ +I+ L N
Sbjct: 263 RDINQKIEQQVLNLSNERFMIPELLFSPSDIEIREAGIPEAVMQSVTHFPENIQAMLLEN 322
Query: 533 TVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMW 354
V GG +PG R+ E+ +LAP+ ++K+ P + W S + L +
Sbjct: 323 VVTIGGNCKFPGFHKRLSSELRSLAPANWEVKVFEPSDPICFPWKKASHM-PLEHWNANK 381
Query: 353 ISKQEYDESGPPIVHRK 303
I++ EY E G I+ RK
Sbjct: 382 ITRSEYSEHGANIMTRK 398
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 70.9 bits (166), Expect = 2e-13
Identities = 40/140 (28%), Positives = 66/140 (47%), Gaps = 15/140 (10%)
Frame = -1
Query: 680 ITIGNERFRCPEALFQPSFLGME-ACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMY 504
I +G ERF PE F P + + E N + +D+RK LY N VLSGG+T++
Sbjct: 280 IDVGFERFLAPEIFFNPEIASSDFLTPLPELVDNVVQSSPIDVRKGLYKNIVLSGGSTLF 339
Query: 503 PGIADRMQKEITALAPST--------------MKIKIIAPPERKYSVWIGGSILASLSTF 366
+R+Q+++ + + + +I+ ++ +VW GGS+LA F
Sbjct: 340 KNFGNRLQRDLKRIVDERIHRSEMLSGAKSGGVDVNVISHKRQRNAVWFGGSLLAQTPEF 399
Query: 365 QQMWISKQEYDESGPPIVHR 306
+K +Y+E G I R
Sbjct: 400 GSYCHTKADYEEYGASIARR 419
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 69.7 bits (163), Expect = 4e-13
Identities = 31/118 (26%), Positives = 62/118 (52%)
Frame = -1
Query: 665 ERFRCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADR 486
E+ R PE +F PS +G++ GI E + + + ++ ++ L +N +++GG PG+ R
Sbjct: 594 EQIRVPEVIFSPSIVGIDQAGILEIMRSILQRHSLEEQQKLVSNVLITGGLGSLPGMETR 653
Query: 485 MQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPPIV 312
+++E+T++ P I + W G S + F+ ++++EY E GP +
Sbjct: 654 IKRELTSIMPVGSSINVFRASNPLLDAWKGASEWSVTEKFKAAKVTREEYLEKGPEYI 711
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 44.0 bits (99), Expect = 3e-05
Identities = 20/86 (23%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Frame = -1
Query: 551 KDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPP---ERKYSVWIGGSILA 381
K+LY++ ++ GG +PG A +++ I + + I +I PP + ++ W G I
Sbjct: 527 KNLYSSILIVGGAGQFPGFAHLLEERIHSKRANIPTISVIPPPRSMDAQFVAWKGACIYN 586
Query: 380 SLSTFQQMWISKQEYDESGPPIVHRK 303
+ ++WI ++ G ++ K
Sbjct: 587 RIRIVSELWIKNSDWKMLGSRVLQYK 612
>SPAC10F6.02c |prp22||ATP-dependent RNA helicase
Prp22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1168
Score = 27.9 bits (59), Expect = 1.8
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = -2
Query: 751 EQEMATXASSSSLEKXYDFPTVRSSPSETKDSVAQRLSSNPRSW 620
EQEM S S + P R + +DS A++L+S SW
Sbjct: 441 EQEMEKQDLSLSWQDTMSNPQDRKFAQDVRDSAARQLTSETPSW 484
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 27.1 bits (57), Expect = 3.1
Identities = 12/37 (32%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
Frame = -1
Query: 404 WIGGSILASLSTFQQM---WISKQEYDESGPPIVHRK 303
++GGSI+A S + + +++ +EY + GP +H K
Sbjct: 486 FLGGSIVAKTSFNESVSSHYVTLEEYAQHGPTAIHTK 522
>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 617
Score = 25.8 bits (54), Expect = 7.1
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -1
Query: 479 KEITALAPSTMKIKIIAPPERKYSVWIGGSILASLST 369
KEI++ A S + + + P E+ W ILA L+T
Sbjct: 212 KEISSQARSNIALPTLRPQEKNLIDWRDRKILAPLTT 248
>SPBC21D10.06c |map4||cell agglutination protein
Map4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 948
Score = 25.8 bits (54), Expect = 7.1
Identities = 17/54 (31%), Positives = 25/54 (46%)
Frame = -2
Query: 736 TXASSSSLEKXYDFPTVRSSPSETKDSVAQRLSSNPRSWVWKLAASTRPHITPS 575
T +S+SS D T+ S+PS S Q +S+P + +S P PS
Sbjct: 282 TSSSTSSSGSSQDSTTIDSTPSTIATSTLQPTTSSPITTSAPSLSSALPTTYPS 335
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,920,381
Number of Sequences: 5004
Number of extensions: 59232
Number of successful extensions: 203
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -