Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_T7_O01
(788 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P49821 Cluster: NADH dehydrogenase [ubiquinone] flavopr... 302 5e-81
UniRef50_A1ZAW7 Cluster: CG11423-PA; n=2; Drosophila melanogaste... 246 5e-64
UniRef50_Q4UKA6 Cluster: NADH-quinone oxidoreductase subunit F; ... 235 7e-61
UniRef50_P56913 Cluster: NADH-quinone oxidoreductase subunit F 2... 149 6e-35
UniRef50_A1Z9Z7 Cluster: CG8102-PA, isoform A; n=4; Sophophora|R... 140 3e-32
UniRef50_Q8F7Q4 Cluster: NADH dehydrogenase I, F subunit; n=9; B... 138 1e-31
UniRef50_A1ALP4 Cluster: NADH dehydrogenase; n=1; Pelobacter pro... 136 4e-31
UniRef50_Q1IS37 Cluster: NADH-quinone oxidoreductase, F subunit;... 135 1e-30
UniRef50_Q6MDR1 Cluster: Probable NADH-ubiquinone oxidoreductase... 128 2e-28
UniRef50_Q2S5I8 Cluster: Respiratory-chain NADH dehydrogenase 51... 124 2e-27
UniRef50_Q9XAQ9 Cluster: NADH-quinone oxidoreductase subunit F; ... 122 8e-27
UniRef50_A2DV30 Cluster: Respiratory-chain NADH dehydrogenase 51... 120 5e-26
UniRef50_A7CUG0 Cluster: NADH dehydrogenase; n=1; Opitutaceae ba... 119 7e-26
UniRef50_A6FCN1 Cluster: NuoF2 NADH I CHAIN F; n=1; Moritella sp... 119 7e-26
UniRef50_Q1IZW8 Cluster: NADH-quinone oxidoreductase, F subunit;... 117 3e-25
UniRef50_Q56222 Cluster: NADH-quinone oxidoreductase subunit 1; ... 117 3e-25
UniRef50_Q2C5T6 Cluster: NADH dehydrogenase I, F subunit; n=2; V... 111 1e-23
UniRef50_A0RMD3 Cluster: NADH-quinone oxidoreductase chain f; n=... 111 3e-23
UniRef50_O94500 Cluster: Iron sulfur cluster assembly protein; n... 110 4e-23
UniRef50_A5FXJ6 Cluster: NADH dehydrogenase; n=1; Acidiphilium c... 109 6e-23
UniRef50_A5UVG4 Cluster: NADH-quinone oxidoreductase, F subunit;... 109 8e-23
UniRef50_Q746S7 Cluster: NADH dehydrogenase I, F subunit; n=7; D... 107 2e-22
UniRef50_Q2LQE7 Cluster: NADH-quinone oxidoreductase chain F; n=... 104 3e-21
UniRef50_Q2LYA9 Cluster: NADH:ubiquinone oxidoreductase, NADH-bi... 101 2e-20
UniRef50_P74024 Cluster: Hydrogenase subunit; n=13; Bacteria|Rep... 100 5e-20
UniRef50_Q8RBC9 Cluster: NADH:ubiquinone oxidoreductase, NADH-bi... 100 8e-20
UniRef50_A3EW61 Cluster: NADH ubiquinone oxidoreductase; n=1; Le... 97 3e-19
UniRef50_Q6AQG1 Cluster: Probable NADP-reducing hydrogenase, 51 ... 97 4e-19
UniRef50_A3ETZ6 Cluster: NADH ubiquinone oxidoreductase; n=1; Le... 96 8e-19
UniRef50_Q2AG83 Cluster: 4Fe-4S ferredoxin, iron-sulfur binding:... 96 1e-18
UniRef50_A4MHV7 Cluster: NADH dehydrogenase; n=5; Bacteria|Rep: ... 95 2e-18
UniRef50_Q9I0J7 Cluster: NADH-quinone oxidoreductase subunit F; ... 94 3e-18
UniRef50_Q6N1Z2 Cluster: NADH-ubiquinone dehydrogenase chain F; ... 94 4e-18
UniRef50_Q9WY70 Cluster: NADP-reducing hydrogenase, subunit C; n... 93 1e-17
UniRef50_Q2LS97 Cluster: NADH-quinone oxidoreductase chain F; n=... 92 1e-17
UniRef50_Q3ZXP7 Cluster: Hydrogenase subunit HymB; n=7; Bacteria... 90 7e-17
UniRef50_O27592 Cluster: NADP-reducing hydrogenase, subunit C; n... 88 2e-16
UniRef50_Q8ABI5 Cluster: NADH:ubiquinone oxidoreductase subunit;... 87 4e-16
UniRef50_A6GJI0 Cluster: Putative NADH dehydrogenase I chain F; ... 86 1e-15
UniRef50_A5FSK8 Cluster: NADH dehydrogenase; n=3; Dehalococcoide... 86 1e-15
UniRef50_Q835I8 Cluster: NAD-dependent formate dehydrogenase, be... 84 4e-15
UniRef50_A1WBG0 Cluster: NADH dehydrogenase (Quinone) precursor;... 84 4e-15
UniRef50_UPI0000384AE3 Cluster: COG1894: NADH:ubiquinone oxidore... 83 1e-14
UniRef50_Q5P4U3 Cluster: Formate dehydrogenase, NAD(P) reducing,... 81 2e-14
UniRef50_A7IMB3 Cluster: NADH dehydrogenase; n=3; Proteobacteria... 81 2e-14
UniRef50_Q9ZBV8 Cluster: Putative respiratory chain oxidoreducta... 77 4e-13
UniRef50_Q51696 Cluster: Putative uncharacterized protein ORF2; ... 77 4e-13
UniRef50_A6PMG7 Cluster: NADH dehydrogenase (Quinone) precursor;... 77 4e-13
UniRef50_Q47HE6 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa... 76 1e-12
UniRef50_A0NMW4 Cluster: NADH:ubiquinone oxidoreductase, NADH-bi... 73 1e-11
UniRef50_Q3A639 Cluster: NADH:ubiquinone oxidoreductase, NADH-bi... 70 8e-11
UniRef50_O66841 Cluster: NADH-quinone oxidoreductase subunit F; ... 68 2e-10
UniRef50_A5N6F8 Cluster: NADH dehydrogenase-related protein; n=1... 67 4e-10
UniRef50_A6LZW7 Cluster: 4Fe-4S ferredoxin, iron-sulfur binding ... 66 9e-10
UniRef50_Q2AFM4 Cluster: Respiratory-chain NADH dehydrogenase do... 65 2e-09
UniRef50_Q7WMR8 Cluster: NAD-dependent formate dehydrogenase bet... 63 7e-09
UniRef50_UPI0000E479C5 Cluster: PREDICTED: similar to mitochondr... 62 2e-08
UniRef50_A1HDX5 Cluster: NADH dehydrogenase; n=4; Ralstonia pick... 61 3e-08
UniRef50_Q603S6 Cluster: NAD-reducing hydrogenase, alpha subunit... 61 4e-08
UniRef50_Q18DS5 Cluster: NAD-reducing hydrogenase, alpha subunit... 60 5e-08
UniRef50_Q1V283 Cluster: NAD-dependent formate dehydrogenase bet... 60 8e-08
UniRef50_P77907 Cluster: Formate dehydrogenase beta subunit; n=2... 58 3e-07
UniRef50_A1SU84 Cluster: Hydrogenase, NADP-reducing subunit C; n... 56 1e-06
UniRef50_Q6NDH3 Cluster: Possible oxidoreductase; n=5; Proteobac... 56 1e-06
UniRef50_A5X3H0 Cluster: HtxX; n=1; Xanthobacter flavus|Rep: Htx... 55 2e-06
UniRef50_A0K164 Cluster: NADH dehydrogenase; n=2; Actinomycetale... 53 9e-06
UniRef50_A6Q1P8 Cluster: FAD-dependent pyridine nucleotide-disul... 50 7e-05
UniRef50_A1SNE6 Cluster: Respiratory-chain NADH dehydrogenase do... 50 7e-05
UniRef50_Q73MB5 Cluster: Pyridine nucleotide-disulphide oxidored... 49 1e-04
UniRef50_Q1K3H5 Cluster: FAD-dependent pyridine nucleotide-disul... 49 1e-04
UniRef50_Q67JR5 Cluster: NADH dehydrogenase subunit; n=1; Symbio... 48 2e-04
UniRef50_Q9ACZ1 Cluster: Putative oxidoreductase; n=3; Streptomy... 46 8e-04
UniRef50_Q65UM2 Cluster: GltD protein; n=2; Pasteurellaceae|Rep:... 45 0.002
UniRef50_Q4AEJ7 Cluster: Hydrogen dehydrogenase; n=1; Chlorobium... 45 0.002
UniRef50_A6QCF8 Cluster: FAD-dependent pyridine nucleotide-disul... 45 0.002
UniRef50_Q5V638 Cluster: Putative NADH dehydrogenase I, F subuni... 45 0.002
UniRef50_Q1PZQ6 Cluster: Similar to NADH dehydrogenase I chain F... 44 0.006
UniRef50_Q74FU5 Cluster: Fe(III) reductase, beta subunit; n=6; G... 42 0.013
UniRef50_O96948 Cluster: Hydrogenase; n=14; Eukaryota|Rep: Hydro... 40 0.071
UniRef50_UPI00006DD0D0 Cluster: hypothetical protein Bmal2_03001... 37 0.66
UniRef50_UPI00015B97F2 Cluster: UPI00015B97F2 related cluster; n... 36 1.2
UniRef50_UPI0000DB7593 Cluster: PREDICTED: similar to NFAT CG111... 35 2.0
UniRef50_A0UJN9 Cluster: Putative uncharacterized protein precur... 35 2.0
UniRef50_A1SQ39 Cluster: Respiratory-chain NADH dehydrogenase do... 34 3.5
UniRef50_A6DNW3 Cluster: Putative uncharacterized protein; n=1; ... 34 4.7
UniRef50_A1SFH1 Cluster: Pentapeptide repeat protein; n=1; Nocar... 34 4.7
UniRef50_UPI0000D9B68E Cluster: PREDICTED: hypothetical protein;... 33 6.2
UniRef50_Q74EB7 Cluster: Putative uncharacterized protein; n=5; ... 33 6.2
UniRef50_Q62CS2 Cluster: Conserved domain protein; n=1; Burkhold... 33 6.2
UniRef50_A6VZW2 Cluster: Pyridoxal-5'-phosphate-dependent protei... 33 6.2
UniRef50_A7ATC7 Cluster: Variant erythrocyte surface antigen-1, ... 33 6.2
UniRef50_UPI0000F2C98A Cluster: PREDICTED: similar to CG9434-PA;... 33 8.2
UniRef50_UPI0000E816CC Cluster: PREDICTED: hypothetical protein;... 33 8.2
UniRef50_Q0RX70 Cluster: Possible transposase, N-terminal; n=1; ... 33 8.2
UniRef50_Q64LI3 Cluster: NADH dehydrogenase subunit 2; n=1; Para... 33 8.2
UniRef50_A6NJI7 Cluster: Uncharacterized protein ENSP00000341171... 33 8.2
UniRef50_Q0USM0 Cluster: Putative uncharacterized protein; n=1; ... 33 8.2
UniRef50_P28739 Cluster: Kinesin-like protein klpA; n=8; Eurotio... 33 8.2
>UniRef50_P49821 Cluster: NADH dehydrogenase [ubiquinone]
flavoprotein 1, mitochondrial precursor; n=215; cellular
organisms|Rep: NADH dehydrogenase [ubiquinone]
flavoprotein 1, mitochondrial precursor - Homo sapiens
(Human)
Length = 464
Score = 302 bits (742), Expect = 5e-81
Identities = 137/166 (82%), Positives = 149/166 (89%)
Frame = -2
Query: 646 KELIERHAGGVTGGWDNLLAIIPGGSSTPLIPKNVCETVLMDFDGLVAAQTSLGTAAIIV 467
KELIE+HAGGVTGGWDNLLA+IPGGSSTPLIPK+VCETVLMDFD LV AQT LGTAA+IV
Sbjct: 297 KELIEKHAGGVTGGWDNLLAVIPGGSSTPLIPKSVCETVLMDFDALVQAQTGLGTAAVIV 356
Query: 466 MDKSTNIVKAIARLIMFYKHESCGQCTPCREGVSWMNKIIYRFVDGNASPKEIDMLWEIS 287
MD+ST+IVKAIARLI FYKHESCGQCTPCREGV WMNK++ RFV G+A P EID LWEIS
Sbjct: 357 MDRSTDIVKAIARLIEFYKHESCGQCTPCREGVDWMNKVMARFVRGDARPAEIDSLWEIS 416
Query: 286 KQIEGHTICALGDGAAWPVQGLIRHFRPELERRMQEYSAAHGPSKA 149
KQIEGHTICALGDGAAWPVQGLIRHFRPELE RMQ ++ H +A
Sbjct: 417 KQIEGHTICALGDGAAWPVQGLIRHFRPELEERMQRFAQQHQARQA 462
Score = 68.1 bits (159), Expect = 2e-10
Identities = 29/36 (80%), Positives = 32/36 (88%)
Frame = -1
Query: 752 FASFGRQRNXGTKLFKISGHVNTPCTVEEEMSIPLQ 645
FA FGR+RN GTKLF ISGHVN PCTVEEEMS+PL+
Sbjct: 262 FAGFGRERNSGTKLFNISGHVNHPCTVEEEMSVPLK 297
>UniRef50_A1ZAW7 Cluster: CG11423-PA; n=2; Drosophila
melanogaster|Rep: CG11423-PA - Drosophila melanogaster
(Fruit fly)
Length = 702
Score = 246 bits (602), Expect = 5e-64
Identities = 113/169 (66%), Positives = 138/169 (81%)
Frame = -2
Query: 646 KELIERHAGGVTGGWDNLLAIIPGGSSTPLIPKNVCETVLMDFDGLVAAQTSLGTAAIIV 467
+ELIERHAGGV GGWDNLLAIIPGGSSTP I K + + D+DGL+A ++S+GT A+IV
Sbjct: 520 RELIERHAGGVIGGWDNLLAIIPGGSSTPCITKEHASSAIHDYDGLMAVRSSMGTGALIV 579
Query: 466 MDKSTNIVKAIARLIMFYKHESCGQCTPCREGVSWMNKIIYRFVDGNASPKEIDMLWEIS 287
M+K T+I+KAIARL FYKHESCGQCTPCREG+ W+N I++RFV G A EIDML+E++
Sbjct: 580 MNKDTDIIKAIARLSAFYKHESCGQCTPCREGLHWVNMIMHRFVTGQAQIAEIDMLFELT 639
Query: 286 KQIEGHTICALGDGAAWPVQGLIRHFRPELERRMQEYSAAHGPSKAERL 140
KQIEGHTICAL DGAAWP QGLIR+FRP +E R+++ AA +KAE L
Sbjct: 640 KQIEGHTICALADGAAWPPQGLIRNFRPVIEERIKK-RAAEDQAKAEAL 687
Score = 62.9 bits (146), Expect = 9e-09
Identities = 28/34 (82%), Positives = 29/34 (85%)
Frame = -1
Query: 752 FASFGRQRNXGTKLFKISGHVNTPCTVEEEMSIP 651
FASFGR RN GTKLF ISGHV PCTVEEEMS+P
Sbjct: 485 FASFGRTRNSGTKLFNISGHVCNPCTVEEEMSMP 518
>UniRef50_Q4UKA6 Cluster: NADH-quinone oxidoreductase subunit F;
n=11; Proteobacteria|Rep: NADH-quinone oxidoreductase
subunit F - Rickettsia felis (Rickettsia azadi)
Length = 422
Score = 235 bits (576), Expect = 7e-61
Identities = 108/160 (67%), Positives = 128/160 (80%)
Frame = -2
Query: 646 KELIERHAGGVTGGWDNLLAIIPGGSSTPLIPKNVCETVLMDFDGLVAAQTSLGTAAIIV 467
KELIE++AGGV GGWDNL AIIPGGSS PL+PK++CE V MDFD L A + LGT IIV
Sbjct: 263 KELIEKYAGGVRGGWDNLKAIIPGGSSVPLLPKSLCE-VDMDFDSLRTAGSGLGTGGIIV 321
Query: 466 MDKSTNIVKAIARLIMFYKHESCGQCTPCREGVSWMNKIIYRFVDGNASPKEIDMLWEIS 287
MDKST+I+ AIARL FY HESCGQCTPCREG WM +++ R V GNA EID L ++
Sbjct: 322 MDKSTDIIYAIARLSKFYMHESCGQCTPCREGTGWMWRVMMRLVKGNAQKSEIDELLNVT 381
Query: 286 KQIEGHTICALGDGAAWPVQGLIRHFRPELERRMQEYSAA 167
K+IEGHTICALGD AAWP+QGLIRHFR E+E R++ +S+A
Sbjct: 382 KEIEGHTICALGDAAAWPIQGLIRHFRSEIEERIKGWSSA 421
Score = 52.4 bits (120), Expect = 1e-05
Identities = 23/36 (63%), Positives = 26/36 (72%)
Frame = -1
Query: 752 FASFGRQRNXGTKLFKISGHVNTPCTVEEEMSIPLQ 645
FAS G+ N GTK+F ISGHVN PC VEE M I L+
Sbjct: 228 FASIGKPNNTGTKIFCISGHVNKPCNVEEAMGISLK 263
>UniRef50_P56913 Cluster: NADH-quinone oxidoreductase subunit F 2;
n=100; Proteobacteria|Rep: NADH-quinone oxidoreductase
subunit F 2 - Rhizobium meliloti (Sinorhizobium
meliloti)
Length = 421
Score = 149 bits (362), Expect = 6e-35
Identities = 72/156 (46%), Positives = 101/156 (64%)
Frame = -2
Query: 646 KELIERHAGGVTGGWDNLLAIIPGGSSTPLIPKNVCETVLMDFDGLVAAQTSLGTAAIIV 467
+EL+E HAGG G + A+IPGG S P+IP+ E V MDFD L AA + LG+A ++V
Sbjct: 262 RELVEEHAGGPLPG-RKVKAVIPGGVSAPVIPEGELE-VGMDFDSLTAAGSMLGSAGVVV 319
Query: 466 MDKSTNIVKAIARLIMFYKHESCGQCTPCREGVSWMNKIIYRFVDGNASPKEIDMLWEIS 287
+D ST +VK R+I F+ HESCG+CTPCREG+ W K++ R G +++ L +
Sbjct: 320 IDDSTCMVKLATRIIEFFHHESCGKCTPCREGLDWTVKVLRRIEAGEGETGDLEQLEMLC 379
Query: 286 KQIEGHTICALGDGAAWPVQGLIRHFRPELERRMQE 179
K I G+T CALGDGAA ++ ++HFR E ++E
Sbjct: 380 KGIFGNTFCALGDGAAMGLRAALKHFRAEFVAHIEE 415
>UniRef50_A1Z9Z7 Cluster: CG8102-PA, isoform A; n=4; Sophophora|Rep:
CG8102-PA, isoform A - Drosophila melanogaster (Fruit
fly)
Length = 481
Score = 140 bits (340), Expect = 3e-32
Identities = 69/159 (43%), Positives = 93/159 (58%), Gaps = 1/159 (0%)
Frame = -2
Query: 646 KELIERHAGGVTGGWDNLLAIIPGGSSTPLIPKNVCETVLMDFDGLVAAQTSLGTAAIIV 467
K+LIERHAGGV GGWDNL A+ PGG STPL+ + VLMDFD L A + G A+IV
Sbjct: 320 KDLIERHAGGVKGGWDNLAAVFPGGLSTPLLDPSTAGKVLMDFDSLTDAGSGFGCGAVIV 379
Query: 466 MDKSTNIVKAIARLIMFYKHESCGQCTPCREGVSWMNKIIYRFVDGNASPKEIDMLWEIS 287
M K + + + R I F++ +C QC+ CR+G W+ +I RFV G P EID I+
Sbjct: 380 MTKDCDPLAIMLRSIQFFEKHTCKQCSYCRDGAIWLPEIFARFVKGQTHPHEIDWTLVIA 439
Query: 286 -KQIEGHTICALGDGAAWPVQGLIRHFRPELERRMQEYS 173
K ICAL + L+R F ++E R+ +Y+
Sbjct: 440 DKMRNSKPICALAYSQVSVAESLVRMFSRKIEERLLKYA 478
Score = 54.8 bits (126), Expect = 2e-06
Identities = 24/36 (66%), Positives = 28/36 (77%)
Frame = -1
Query: 752 FASFGRQRNXGTKLFKISGHVNTPCTVEEEMSIPLQ 645
+A GR N GTKL+ +SG VN PCTVEEEMSIPL+
Sbjct: 285 WAGLGRSYNTGTKLYCLSGQVNNPCTVEEEMSIPLK 320
>UniRef50_Q8F7Q4 Cluster: NADH dehydrogenase I, F subunit; n=9;
Bacteria|Rep: NADH dehydrogenase I, F subunit -
Leptospira interrogans
Length = 443
Score = 138 bits (334), Expect = 1e-31
Identities = 63/155 (40%), Positives = 97/155 (62%), Gaps = 1/155 (0%)
Frame = -2
Query: 643 ELIERHAGGVTGGWDNLLAIIPGGSSTPLIPKNVCETVLMDFDGLVAAQTSLGTAAIIVM 464
EL+ GG+ L AIIPGGSS P++ C+T MDF+ + A +T LG+ A+IV+
Sbjct: 263 ELVNDLCGGIIDD-KPLKAIIPGGSSVPILTAEECKTANMDFESMAAHKTMLGSGAVIVL 321
Query: 463 DKSTNIVKAIARLIMFYKHESCGQCTPCREGVSWMNKIIYRFVDGNASPKEIDMLWEISK 284
+ T+IV+ R FY HESCGQCTPCREG W+ I+Y+ +G + ++ID+++ +S+
Sbjct: 322 AEGTDIVETTYRFARFYAHESCGQCTPCREGTHWVRDILYKIREGEGTTEDIDLIFSLSR 381
Query: 283 QIE-GHTICALGDGAAWPVQGLIRHFRPELERRMQ 182
+E G TIC L D V+ ++ FR E + +++
Sbjct: 382 NMEGGTTICPLSDACVGAVRPALQKFRSEFDAKLK 416
Score = 37.1 bits (82), Expect = 0.50
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = -1
Query: 752 FASFGRQRNXGTKLFKISGHVNTPCTVEEEMSIPL 648
++ G +++ GT+LF +SGHV P E E+ PL
Sbjct: 227 YSKIGTEKSPGTRLFSVSGHVKKPGVYEIELGTPL 261
>UniRef50_A1ALP4 Cluster: NADH dehydrogenase; n=1; Pelobacter
propionicus DSM 2379|Rep: NADH dehydrogenase -
Pelobacter propionicus (strain DSM 2379)
Length = 427
Score = 136 bits (330), Expect = 4e-31
Identities = 71/152 (46%), Positives = 97/152 (63%), Gaps = 1/152 (0%)
Frame = -2
Query: 646 KELIERHAGGVTGGWDNLLAIIPGGSSTP-LIPKNVCETVLMDFDGLVAAQTSLGTAAII 470
K+LI GG+ G + L A+IPGGSSTP L+P++V ET +D + L +T LG+ +I
Sbjct: 262 KKLIFEECGGILNGKE-LKAVIPGGSSTPILLPQDV-ETANLDAECLSTYRTMLGSGGVI 319
Query: 469 VMDKSTNIVKAIARLIMFYKHESCGQCTPCREGVSWMNKIIYRFVDGNASPKEIDMLWEI 290
V+ + +V+ + L FY HESCGQCTPCREG +WMN II R V G +++ L I
Sbjct: 320 VIAEGVCMVRLLHTLSRFYAHESCGQCTPCREGSAWMNDIISRIVAGKGVKGDLESLERI 379
Query: 289 SKQIEGHTICALGDGAAWPVQGLIRHFRPELE 194
+K I G+T+CALGD A+ PV I FR E +
Sbjct: 380 TKGIMGNTVCALGDAASMPVINFITKFRAEFD 411
Score = 36.3 bits (80), Expect = 0.88
Identities = 15/38 (39%), Positives = 24/38 (63%)
Frame = -1
Query: 758 K*FASFGRQRNXGTKLFKISGHVNTPCTVEEEMSIPLQ 645
K F++ G +++ GTK+F +SGHV P E + PL+
Sbjct: 225 KAFSAMGTEKHPGTKIFGVSGHVKKPGLYELPLGYPLK 262
>UniRef50_Q1IS37 Cluster: NADH-quinone oxidoreductase, F subunit;
n=9; Bacteria|Rep: NADH-quinone oxidoreductase, F
subunit - Acidobacteria bacterium (strain Ellin345)
Length = 439
Score = 135 bits (326), Expect = 1e-30
Identities = 64/155 (41%), Positives = 92/155 (59%)
Frame = -2
Query: 646 KELIERHAGGVTGGWDNLLAIIPGGSSTPLIPKNVCETVLMDFDGLVAAQTSLGTAAIIV 467
K++I GG+ GG L A++PGGSSTP++ + + + MDFD ++ A + LG+ ++V
Sbjct: 268 KKMIYEVGGGIQGG-RGLKAVVPGGSSTPVLTADEID-IAMDFDSVMKAGSMLGSGGVVV 325
Query: 466 MDKSTNIVKAIARLIMFYKHESCGQCTPCREGVSWMNKIIYRFVDGNASPKEIDMLWEIS 287
+D T IVK R I FY+HESCG C PCREG W+ K + RF G K+ID + ++
Sbjct: 326 LDDRTCIVKFALRTIKFYQHESCGWCIPCREGTDWLKKTLTRFHAGGGIKKDIDNIKYLA 385
Query: 286 KQIEGHTICALGDGAAWPVQGLIRHFRPELERRMQ 182
+ G T C LGD AA P + FR E E ++
Sbjct: 386 DNMLGRTFCPLGDAAAMPTIAFVEKFRKEFEDHLE 420
>UniRef50_Q6MDR1 Cluster: Probable NADH-ubiquinone oxidoreductase
chain F; n=1; Candidatus Protochlamydia amoebophila
UWE25|Rep: Probable NADH-ubiquinone oxidoreductase chain
F - Protochlamydia amoebophila (strain UWE25)
Length = 432
Score = 128 bits (309), Expect = 2e-28
Identities = 70/170 (41%), Positives = 100/170 (58%)
Frame = -2
Query: 646 KELIERHAGGVTGGWDNLLAIIPGGSSTPLIPKNVCETVLMDFDGLVAAQTSLGTAAIIV 467
KE++ER AG + G A PGGSS L+ + +T MDFD + A ++ LGTA+IIV
Sbjct: 263 KEVLER-AGWMLPG-HQFKACYPGGSSCSLLTERDLDTP-MDFDSVAAKKSMLGTASIIV 319
Query: 466 MDKSTNIVKAIARLIMFYKHESCGQCTPCREGVSWMNKIIYRFVDGNASPKEIDMLWEIS 287
MD ST++VK RL+ FY++ESCG+CTPCREG W +I+ R + G + ++ + I
Sbjct: 320 MDDSTDMVKVANRLMEFYQNESCGKCTPCREGTRWTKQILTRILAGRGTVGDLKTIERIC 379
Query: 286 KQIEGHTICALGDGAAWPVQGLIRHFRPELERRMQEYSAAHGPSKAERLY 137
+Q+E + C L GAA P+ IR FR E E + A P + + Y
Sbjct: 380 QQMEMDSFCPLAPGAALPIVSAIREFRGEFESYIMRNIHADKPPEMKITY 429
Score = 40.7 bits (91), Expect = 0.041
Identities = 16/36 (44%), Positives = 24/36 (66%)
Frame = -1
Query: 752 FASFGRQRNXGTKLFKISGHVNTPCTVEEEMSIPLQ 645
+ S G+ +N GTK+F++SGHV P E + IPL+
Sbjct: 228 YQSIGKPKNTGTKIFQVSGHVQNPGCFEFPLGIPLK 263
>UniRef50_Q2S5I8 Cluster: Respiratory-chain NADH dehydrogenase 51 Kd
subunit family; n=2; Sphingobacteriales genera incertae
sedis|Rep: Respiratory-chain NADH dehydrogenase 51 Kd
subunit family - Salinibacter ruber (strain DSM 13855)
Length = 464
Score = 124 bits (300), Expect = 2e-27
Identities = 59/155 (38%), Positives = 93/155 (60%), Gaps = 1/155 (0%)
Frame = -2
Query: 643 ELIERHAGGVTGGWDNLLAIIPGGSSTPLIPKNVCETVLMDFDGLVAAQTSLGTAAIIVM 464
++I GG+ D L A++PGGSS P +P + + + M+ + L + GT +V+
Sbjct: 289 DMIYDVCGGMARDKD-LKAVVPGGSSVPPVPADQIDGISMNDESLGEVGSRTGTFCPLVL 347
Query: 463 DKSTNIVKAIARLIMFYKHESCGQCTPCREGVSWMNKIIYRFVDGNASPKEIDMLWEISK 284
D+ T++V + R+ FY+ E+CGQCTPCREG SW+ KI+ R +G ++ID+L E+
Sbjct: 348 DEETDMVSFLRRVAHFYQDETCGQCTPCREGTSWLEKILARIDEGEGRMRDIDLLLELCD 407
Query: 283 QIE-GHTICALGDGAAWPVQGLIRHFRPELERRMQ 182
++ G TICA DGA PV+ ++ FR E + Q
Sbjct: 408 NMDGGRTICAFADGAVGPVRATVKRFREEFAAKCQ 442
>UniRef50_Q9XAQ9 Cluster: NADH-quinone oxidoreductase subunit F;
n=32; Bacteria|Rep: NADH-quinone oxidoreductase subunit
F - Streptomyces coelicolor
Length = 449
Score = 122 bits (295), Expect = 8e-27
Identities = 61/159 (38%), Positives = 93/159 (58%)
Frame = -2
Query: 625 AGGVTGGWDNLLAIIPGGSSTPLIPKNVCETVLMDFDGLVAAQTSLGTAAIIVMDKSTNI 446
+GG+ G L PGGSSTP+ + V +D++G+ AA + LGT A+ D++T +
Sbjct: 282 SGGMRPG-HRLKFWTPGGSSTPMFTDEHLD-VPLDYEGVGAAGSMLGTKALQCFDETTCV 339
Query: 445 VKAIARLIMFYKHESCGQCTPCREGVSWMNKIIYRFVDGNASPKEIDMLWEISKQIEGHT 266
V+A+ R FY HESCG+CTPCREG W+ +++ G ++D L +I+ I G +
Sbjct: 340 VRAVTRWTEFYAHESCGKCTPCREGTYWLVQLLRDIEAGKGQMSDLDKLNDIADNINGKS 399
Query: 265 ICALGDGAAWPVQGLIRHFRPELERRMQEYSAAHGPSKA 149
CALGDGAA P+ +++FR E E + P+K+
Sbjct: 400 FCALGDGAASPIFSSLKYFREEYEEHITGRGCPFDPAKS 438
>UniRef50_A2DV30 Cluster: Respiratory-chain NADH dehydrogenase 51 Kd
subunit family protein; n=1; Trichomonas vaginalis
G3|Rep: Respiratory-chain NADH dehydrogenase 51 Kd
subunit family protein - Trichomonas vaginalis G3
Length = 425
Score = 120 bits (288), Expect = 5e-26
Identities = 57/153 (37%), Positives = 90/153 (58%)
Frame = -2
Query: 646 KELIERHAGGVTGGWDNLLAIIPGGSSTPLIPKNVCETVLMDFDGLVAAQTSLGTAAIIV 467
KELI+ H GV GGWDNL IIPGG+S P I K + ++ FD + + LGT +++V
Sbjct: 271 KELIDVHGSGVRGGWDNLQCIIPGGTSCPPITKEQAKNAILGFDEMSKIGSGLGTGSLVV 330
Query: 466 MDKSTNIVKAIARLIMFYKHESCGQCTPCREGVSWMNKIIYRFVDGNASPKEIDMLWEIS 287
+D + +IV+ R+ FYK E CGQC C EG M +I + G + ++ L E++
Sbjct: 331 IDNTADIVEVYRRIANFYKDECCGQCKQCVEGTETMAEIFDKIARGKGTKDDVKHLEEVA 390
Query: 286 KQIEGHTICALGDGAAWPVQGLIRHFRPELERR 188
++ + IC+ GA+ P++G ++ F+ +L R
Sbjct: 391 FGMKKY-ICSFSVGASDPIRGFLKVFKNKLLER 422
Score = 41.9 bits (94), Expect = 0.018
Identities = 18/38 (47%), Positives = 26/38 (68%)
Frame = -1
Query: 758 K*FASFGRQRNXGTKLFKISGHVNTPCTVEEEMSIPLQ 645
K F+S G + G K+++ISGHVN PC VEE + + L+
Sbjct: 234 KWFSSLGIPGSRGPKIYQISGHVNRPCIVEETLGMSLK 271
>UniRef50_A7CUG0 Cluster: NADH dehydrogenase; n=1; Opitutaceae
bacterium TAV2|Rep: NADH dehydrogenase - Opitutaceae
bacterium TAV2
Length = 478
Score = 119 bits (287), Expect = 7e-26
Identities = 52/109 (47%), Positives = 71/109 (65%)
Frame = -2
Query: 538 ETVLMDFDGLVAAQTSLGTAAIIVMDKSTNIVKAIARLIMFYKHESCGQCTPCREGVSWM 359
E + MDFD L A + G+ +IVMD S N+V+A+A + FY HESCGQCTPCREG WM
Sbjct: 332 EDIPMDFDTLAACGSMGGSGGVIVMDDSVNMVEALANINAFYSHESCGQCTPCREGSLWM 391
Query: 358 NKIIYRFVDGNASPKEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRH 212
KI R V G A ++ +L ++ QI G TICA+G+ +WP Q +++
Sbjct: 392 KKITARMVHGTARAEDAALLKGVADQIPGRTICAMGEACSWPTQSFLQN 440
>UniRef50_A6FCN1 Cluster: NuoF2 NADH I CHAIN F; n=1; Moritella sp.
PE36|Rep: NuoF2 NADH I CHAIN F - Moritella sp. PE36
Length = 425
Score = 119 bits (287), Expect = 7e-26
Identities = 57/150 (38%), Positives = 88/150 (58%)
Frame = -2
Query: 643 ELIERHAGGVTGGWDNLLAIIPGGSSTPLIPKNVCETVLMDFDGLVAAQTSLGTAAIIVM 464
EL+ + GG G A+IPGG S P+IP + V M+F L A + +G+AA+I +
Sbjct: 263 ELVYDYGGGPLTG--KFKAVIPGGLSAPMIPLAGLD-VKMNFADLATADSMMGSAAVIAL 319
Query: 463 DKSTNIVKAIARLIMFYKHESCGQCTPCREGVSWMNKIIYRFVDGNASPKEIDMLWEISK 284
D++ +I R+ F+ HESCG+C PCREG+ W +KI+ R G P +++ L I
Sbjct: 320 DETASIPAVGRRIAEFFSHESCGKCAPCREGLPWASKILNRIESGQGRPGDLEQLQVICG 379
Query: 283 QIEGHTICALGDGAAWPVQGLIRHFRPELE 194
+ ++ CALG GAAW ++ ++HF E +
Sbjct: 380 GVFNNSFCALGVGAAWAIRATLKHFPHEYD 409
>UniRef50_Q1IZW8 Cluster: NADH-quinone oxidoreductase, F subunit;
n=1; Deinococcus geothermalis DSM 11300|Rep:
NADH-quinone oxidoreductase, F subunit - Deinococcus
geothermalis (strain DSM 11300)
Length = 446
Score = 117 bits (282), Expect = 3e-25
Identities = 61/158 (38%), Positives = 93/158 (58%), Gaps = 3/158 (1%)
Frame = -2
Query: 646 KELIERHAGGVTGGWDNLLAIIPGGSSTPLIP--KNVCETVLMDFDGLVAAQTSLGTAAI 473
+EL+ AGG +++ AIIPGGSS P++P +T MD++ + AA + LGT +
Sbjct: 278 RELVYDWAGGPL---EDIKAIIPGGSSCPMLPWDDRTLDTP-MDYESVAAAGSMLGTGGV 333
Query: 472 IVMDKSTNIVKAIARLIMFYKHESCGQCTPCREGVS-WMNKIIYRFVDGNASPKEIDMLW 296
++ K+ IV L+ FY HESCG+CTPCREG+S WM ++ + V G+ P ++ ++
Sbjct: 334 TLIPKADCIVNVTWNLVRFYAHESCGKCTPCREGISGWMVRMYEKLVRGHGQPGDVQLIL 393
Query: 295 EISKQIEGHTICALGDGAAWPVQGLIRHFRPELERRMQ 182
++S I G + CAL D PV I+ FR E + Q
Sbjct: 394 DMSDNIGGRSFCALADACLGPVLSSIKLFREEYDTLAQ 431
>UniRef50_Q56222 Cluster: NADH-quinone oxidoreductase subunit 1;
n=6; Bacteria|Rep: NADH-quinone oxidoreductase subunit 1
- Thermus thermophilus (strain HB8 / ATCC 27634 / DSM
579)
Length = 438
Score = 117 bits (282), Expect = 3e-25
Identities = 65/167 (38%), Positives = 96/167 (57%), Gaps = 3/167 (1%)
Frame = -2
Query: 646 KELIERHAGGVTGGWDNLLAIIPGGSSTPLIP--KNVCETVLMDFDGLVAAQTSLGTAAI 473
+ELI AGG + + AIIPGGSSTP +P + V +T M ++ L A + LGT +
Sbjct: 273 RELIYEWAGGPL---EPIQAIIPGGSSTPPLPFTEEVLDTP-MSYEHLQAKGSMLGTGGV 328
Query: 472 IVMDKSTNIVKAIARLIMFYKHESCGQCTPCREGVS-WMNKIIYRFVDGNASPKEIDMLW 296
I++ + ++V A+ L FY HESCG+CTPCREGV+ +M + + G K+++ L
Sbjct: 329 ILIPERVSMVDAMWNLTRFYAHESCGKCTPCREGVAGFMVNLFAKIGTGQGEEKDVENLE 388
Query: 295 EISKQIEGHTICALGDGAAWPVQGLIRHFRPELERRMQEYSAAHGPS 155
+ IEG + C L D A WPV+G +RHF+ + +E PS
Sbjct: 389 ALLPLIEGRSFCPLADAAVWPVKGSLRHFKDQYLALAREKRPVPRPS 435
>UniRef50_Q2C5T6 Cluster: NADH dehydrogenase I, F subunit; n=2;
Vibrionaceae|Rep: NADH dehydrogenase I, F subunit -
Photobacterium sp. SKA34
Length = 427
Score = 111 bits (268), Expect = 1e-23
Identities = 55/162 (33%), Positives = 95/162 (58%), Gaps = 1/162 (0%)
Frame = -2
Query: 646 KELIERHAGGVTGGWDNLLAIIPGGSSTP-LIPKNVCETVLMDFDGLVAAQTSLGTAAII 470
+ELI HAGG+ + L+ +PGG+ST ++P+++ + +D+DG + LGT II
Sbjct: 260 RELIFEHAGGLLDDRE-LVGFLPGGASTQFMLPEHL--DIPLDWDGPATVGSRLGTGGII 316
Query: 469 VMDKSTNIVKAIARLIMFYKHESCGQCTPCREGVSWMNKIIYRFVDGNASPKEIDMLWEI 290
VMD + + + L F+ ESCG CTPCR+G+ ++ ++ +F G A+ K++D+L E+
Sbjct: 317 VMDDAICPIDFMINLTEFFARESCGYCTPCRDGLPYVVHVLKKFETGEATSKDLDLLHEL 376
Query: 289 SKQIEGHTICALGDGAAWPVQGLIRHFRPELERRMQEYSAAH 164
+ I +T CAL GA P+ ++HF+ + ++ H
Sbjct: 377 CETIYPNTFCALAPGALMPIMTGLKHFKHVFDSHIEGQRCTH 418
>UniRef50_A0RMD3 Cluster: NADH-quinone oxidoreductase chain f; n=1;
Campylobacter fetus subsp. fetus 82-40|Rep: NADH-quinone
oxidoreductase chain f - Campylobacter fetus subsp.
fetus (strain 82-40)
Length = 406
Score = 111 bits (266), Expect = 3e-23
Identities = 53/150 (35%), Positives = 84/150 (56%), Gaps = 2/150 (1%)
Frame = -2
Query: 643 ELIERHAGGVTGGWDN--LLAIIPGGSSTPLIPKNVCETVLMDFDGLVAAQTSLGTAAII 470
+ I GGV W N L A+IPGGSS ++ K+ +D++ L +++LGT ++
Sbjct: 251 DFINDFGGGV---WKNRELKAVIPGGSSAAVLTKDEVLKATLDYESLKEFKSALGTGGMM 307
Query: 469 VMDKSTNIVKAIARLIMFYKHESCGQCTPCREGVSWMNKIIYRFVDGNASPKEIDMLWEI 290
V D + ++ + + L+ FY ESCGQCTPCREG W +++ + V+G S +++D L +I
Sbjct: 308 VFDDTISMPEVLLNLLEFYTEESCGQCTPCREGCGWALRVVKKIVEGEGSLRDLDTLKDI 367
Query: 289 SKQIEGHTICALGDGAAWPVQGLIRHFRPE 200
S ++G TIC + G I F E
Sbjct: 368 SYMLDGKTICVFAPAVKDVIMGFITKFENE 397
Score = 34.7 bits (76), Expect = 2.7
Identities = 14/28 (50%), Positives = 19/28 (67%)
Frame = -1
Query: 752 FASFGRQRNXGTKLFKISGHVNTPCTVE 669
+ S G +++ GT LF +SG VNTPC E
Sbjct: 215 YRSVGTEKSPGTLLFAVSGCVNTPCVKE 242
>UniRef50_O94500 Cluster: Iron sulfur cluster assembly protein; n=1;
Schizosaccharomyces pombe|Rep: Iron sulfur cluster
assembly protein - Schizosaccharomyces pombe (Fission
yeast)
Length = 452
Score = 110 bits (264), Expect = 4e-23
Identities = 53/154 (34%), Positives = 83/154 (53%), Gaps = 1/154 (0%)
Frame = -2
Query: 646 KELIERHAGGVTGGWDNLLAIIPGGSSTPLIPKNVCETVLMDFDGLVAAQTSLGTAAIIV 467
K+LIE +AGGV GGW+ L+ I PGG + ++ KN CE V MDFD L A +SLGT ++IV
Sbjct: 295 KDLIENYAGGVRGGWNKLVGIFPGGPCSGILNKNQCEQVTMDFDSLKALDSSLGTGSVIV 354
Query: 466 MDKSTNIVKAIARLIMFYKHESCGQCTPCREGVSWMNKIIYRFVDGNASPKEI-DMLWEI 290
++ I +++ FY +C C CR+GV + + + DG+A ++ DM +
Sbjct: 355 LNDHDQIFESLLNFAKFYSTNTCHTCPVCRDGVEDVIETLKGLKDGHAHLSQLKDMFSKF 414
Query: 289 SKQIEGHTICALGDGAAWPVQGLIRHFRPELERR 188
+ C GD + + R+F ++ R
Sbjct: 415 NMPSSSKVFCGFGDSMRHQIHSIQRNFPDQITFR 448
Score = 47.6 bits (108), Expect = 4e-04
Identities = 24/46 (52%), Positives = 27/46 (58%)
Frame = -1
Query: 782 PRSVGVAXK*FASFGRQRNXGTKLFKISGHVNTPCTVEEEMSIPLQ 645
P + K F S GR N GTKLF ISG VN P +E MSIPL+
Sbjct: 250 PAIIKKGPKFFISMGRPNNRGTKLFSISGEVNEPNVIEACMSIPLK 295
>UniRef50_A5FXJ6 Cluster: NADH dehydrogenase; n=1; Acidiphilium
cryptum JF-5|Rep: NADH dehydrogenase - Acidiphilium
cryptum (strain JF-5)
Length = 434
Score = 109 bits (263), Expect = 6e-23
Identities = 58/156 (37%), Positives = 89/156 (57%), Gaps = 1/156 (0%)
Frame = -2
Query: 643 ELIERHAGGVTGGWDNLLAIIPGGSSTPLIPKNVCETVLMDFDGLVAAQTSLGTAAIIVM 464
E+IE HAGG+ G++ A++PGG+ST I + + V MDFD + + LGTA I+V+
Sbjct: 268 EIIEEHAGGMREGYE-ARAVLPGGASTAFIMRENFD-VPMDFDSVGKIGSWLGTANILVL 325
Query: 463 DKSTNIVKAIARLIMFYKHESCGQCTPCREGVSWMNKIIYRFVDGNASPKEIDML-WEIS 287
D+ V + + F+ ESCG CTPCR+G+ W+ +I+ G P +I++L +
Sbjct: 326 DQKRCPVGLLRNIEHFFAQESCGWCTPCRDGLPWVERILTALEAGEGEPDDIELLAHHVD 385
Query: 286 KQIEGHTICALGDGAAWPVQGLIRHFRPELERRMQE 179
G T C L GA P++ ++ FR E ER + E
Sbjct: 386 FLGPGRTFCDLAPGAMAPLRSGLKFFREEFERHVSE 421
>UniRef50_A5UVG4 Cluster: NADH-quinone oxidoreductase, F subunit;
n=9; Bacteria|Rep: NADH-quinone oxidoreductase, F
subunit - Roseiflexus sp. RS-1
Length = 449
Score = 109 bits (262), Expect = 8e-23
Identities = 47/140 (33%), Positives = 87/140 (62%)
Frame = -2
Query: 598 NLLAIIPGGSSTPLIPKNVCETVLMDFDGLVAAQTSLGTAAIIVMDKSTNIVKAIARLIM 419
N+ ++PGG+S + + + V MD++ L A + LG+ +IV+D+S + V+ ++
Sbjct: 297 NVKIVVPGGASAGWLTADDLD-VTMDYEALAAKGSMLGSGGVIVLDESVSAVEVAYKMDE 355
Query: 418 FYKHESCGQCTPCREGVSWMNKIIYRFVDGNASPKEIDMLWEISKQIEGHTICALGDGAA 239
F+KHESCG+CTPCREG ++ K+++R G+ ++I +L ++ Q+ G+ C LG+ A
Sbjct: 356 FFKHESCGKCTPCREGTYFLVKVLHRITHGHGRKEDIPLLHDVYHQMAGNCFCLLGESAV 415
Query: 238 WPVQGLIRHFRPELERRMQE 179
P++ +R F E E+ + +
Sbjct: 416 VPIRSALRLFPHEFEQAIAQ 435
Score = 39.1 bits (87), Expect = 0.12
Identities = 16/36 (44%), Positives = 22/36 (61%)
Frame = -1
Query: 752 FASFGRQRNXGTKLFKISGHVNTPCTVEEEMSIPLQ 645
+ FG +++ GTK+F ISGHV P E IPL+
Sbjct: 245 YRQFGTEKSPGTKVFSISGHVKRPGNYEAPFGIPLR 280
>UniRef50_Q746S7 Cluster: NADH dehydrogenase I, F subunit; n=7;
Deltaproteobacteria|Rep: NADH dehydrogenase I, F subunit
- Geobacter sulfurreducens
Length = 423
Score = 107 bits (258), Expect = 2e-22
Identities = 59/153 (38%), Positives = 84/153 (54%)
Frame = -2
Query: 643 ELIERHAGGVTGGWDNLLAIIPGGSSTPLIPKNVCETVLMDFDGLVAAQTSLGTAAIIVM 464
E+I+ GG+ G + A IPGG+STP + V MDFD + A + LGT I+V
Sbjct: 263 EIIDGPCGGMLPGRE-FKACIPGGASTPFFTREHWN-VPMDFDAVARAGSRLGTGGIVVF 320
Query: 463 DKSTNIVKAIARLIMFYKHESCGQCTPCREGVSWMNKIIYRFVDGNASPKEIDMLWEISK 284
D++T +V A L+ FY ESCG CTPCREG+ ++ ++ R G + I +L E
Sbjct: 321 DRNTCMVAATLNLVSFYARESCGWCTPCREGLPFVKDVLARIEAGAGREEHIAILRE-HV 379
Query: 283 QIEGHTICALGDGAAWPVQGLIRHFRPELERRM 185
Q + C L GA PV+GL+R F E+ +
Sbjct: 380 QYLNYAFCPLAPGAMGPVEGLLRLFEDEIREHI 412
>UniRef50_Q2LQE7 Cluster: NADH-quinone oxidoreductase chain F; n=1;
Syntrophus aciditrophicus SB|Rep: NADH-quinone
oxidoreductase chain F - Syntrophus aciditrophicus
(strain SB)
Length = 574
Score = 104 bits (249), Expect = 3e-21
Identities = 53/150 (35%), Positives = 81/150 (54%)
Frame = -2
Query: 643 ELIERHAGGVTGGWDNLLAIIPGGSSTPLIPKNVCETVLMDFDGLVAAQTSLGTAAIIVM 464
EL+E AGGV G L A I GG S ++ + + MD+D T LG+ I+V+
Sbjct: 424 ELMEA-AGGVKG---KLKAAIVGGLSVAILKAEELQDLTMDYDSCAKHGTGLGSGGIMVI 479
Query: 463 DKSTNIVKAIARLIMFYKHESCGQCTPCREGVSWMNKIIYRFVDGNASPKEIDMLWEISK 284
+ +I + R I FY HESCG+C PCREG + KI+++ + G +I+ + I
Sbjct: 480 SEDFSIPELALRTIKFYAHESCGKCVPCREGSYTLVKILHKLLSGQGEAADIEKILGICN 539
Query: 283 QIEGHTICALGDGAAWPVQGLIRHFRPELE 194
+ G T+C G+ A P+Q ++ FR E +
Sbjct: 540 TVRGLTLCPTGEAFAVPIQAMVEKFRSEFD 569
>UniRef50_Q2LYA9 Cluster: NADH:ubiquinone oxidoreductase,
NADH-binding subunit; n=3; cellular organisms|Rep:
NADH:ubiquinone oxidoreductase, NADH-binding subunit -
Syntrophus aciditrophicus (strain SB)
Length = 637
Score = 101 bits (243), Expect = 2e-20
Identities = 57/166 (34%), Positives = 88/166 (53%)
Frame = -2
Query: 646 KELIERHAGGVTGGWDNLLAIIPGGSSTPLIPKNVCETVLMDFDGLVAAQTSLGTAAIIV 467
K++I GG+ GG A+ GG S IP + + + +DFD L A + +G+ +IV
Sbjct: 415 KDIIYEIGGGIPGG-RKFKAVQTGGPSGGCIPDTMID-LPVDFDSLWEAGSMMGSGGMIV 472
Query: 466 MDKSTNIVKAIARLIMFYKHESCGQCTPCREGVSWMNKIIYRFVDGNASPKEIDMLWEIS 287
MD T +V I F ESCG+C PCREG+ MN+I+ G ++++L ++
Sbjct: 473 MDDKTCMVDIARYFIEFLVSESCGKCVPCREGIYRMNEILQDICAGKGRRGDLELLGRMA 532
Query: 286 KQIEGHTICALGDGAAWPVQGLIRHFRPELERRMQEYSAAHGPSKA 149
+ I+ ++CALG A PV IR+FR E + ++ G KA
Sbjct: 533 EAIKDGSLCALGGSAPNPVLSTIRYFRSEYDAHIRSKKCPAGVCKA 578
>UniRef50_P74024 Cluster: Hydrogenase subunit; n=13; Bacteria|Rep:
Hydrogenase subunit - Synechocystis sp. (strain PCC
6803)
Length = 533
Score = 100 bits (239), Expect = 5e-20
Identities = 52/155 (33%), Positives = 89/155 (57%)
Frame = -2
Query: 646 KELIERHAGGVTGGWDNLLAIIPGGSSTPLIPKNVCETVLMDFDGLVAAQTSLGTAAIIV 467
++++E GGV G + A+ GG S IP + +T + ++D L+A T +G+ +IV
Sbjct: 380 RQVVEEMGGGVPNG-GQVKAVQTGGPSGGCIPADKLDTPI-EYDTLLALGTMMGSGGMIV 437
Query: 466 MDKSTNIVKAIARLIMFYKHESCGQCTPCREGVSWMNKIIYRFVDGNASPKEIDMLWEIS 287
MD+STN+V + F K ESCG+C PCR G + ++ RF++G A+ +++ L +
Sbjct: 438 MDESTNMVDVAQFYMDFCKSESCGKCIPCRAGTVQLYDLLTRFLEGEATQEDLIKLENLC 497
Query: 286 KQIEGHTICALGDGAAWPVQGLIRHFRPELERRMQ 182
++ ++C LG A PV +R+FR E E ++
Sbjct: 498 HMVKETSLCGLGMSAPNPVISTLRYFRHEYEELLK 532
>UniRef50_Q8RBC9 Cluster: NADH:ubiquinone oxidoreductase,
NADH-binding (51 kD) subunit; n=11; Bacteria|Rep:
NADH:ubiquinone oxidoreductase, NADH-binding (51 kD)
subunit - Thermoanaerobacter tengcongensis
Length = 596
Score = 99.5 bits (237), Expect = 8e-20
Identities = 52/156 (33%), Positives = 83/156 (53%)
Frame = -2
Query: 646 KELIERHAGGVTGGWDNLLAIIPGGSSTPLIPKNVCETVLMDFDGLVAAQTSLGTAAIIV 467
+E+I GG+ GG A+ GG S IP + +T + D+D L +A +G+ ++V
Sbjct: 374 REIIYEIGGGIPGG-KKFKAVQIGGPSGGCIPAELLDTPI-DYDSLTSAGAMMGSGGLVV 431
Query: 466 MDKSTNIVKAIARLIMFYKHESCGQCTPCREGVSWMNKIIYRFVDGNASPKEIDMLWEIS 287
MD+ T +V + F ESCG+C PCR G M +++ + G +I+ L E++
Sbjct: 432 MDEDTCMVNVAKFFLEFTVDESCGKCAPCRIGTKRMLELLDKITSGKGEEGDIEKLEELA 491
Query: 286 KQIEGHTICALGDGAAWPVQGLIRHFRPELERRMQE 179
K I+ +C LG A PV +R+FR E E ++E
Sbjct: 492 KTIKATALCGLGQTAPNPVLSTLRYFRHEYEAHIKE 527
>UniRef50_A3EW61 Cluster: NADH ubiquinone oxidoreductase; n=1;
Leptospirillum sp. Group II UBA|Rep: NADH ubiquinone
oxidoreductase - Leptospirillum sp. Group II UBA
Length = 453
Score = 97.5 bits (232), Expect = 3e-19
Identities = 50/156 (32%), Positives = 83/156 (53%)
Frame = -2
Query: 646 KELIERHAGGVTGGWDNLLAIIPGGSSTPLIPKNVCETVLMDFDGLVAAQTSLGTAAIIV 467
+ L+E +AGG G + + + PGG S ++P +T L D+D L A + +G+ +IV
Sbjct: 277 RTLVEEYAGGAPDG-ERIESFYPGGPSFGVLPAKDLDTPL-DYDALRALGSGIGSGGVIV 334
Query: 466 MDKSTNIVKAIARLIMFYKHESCGQCTPCREGVSWMNKIIYRFVDGNASPKEIDMLWEIS 287
+ V + FY+ SCGQC PCR G +++I+ F +G AS + + + IS
Sbjct: 335 LSDKDCPVATARQFAAFYETGSCGQCPPCRIGTENLHEILELFENGKASRENVQRILRIS 394
Query: 286 KQIEGHTICALGDGAAWPVQGLIRHFRPELERRMQE 179
I+G C L +A+ V+ L+RHF E + + +
Sbjct: 395 DMIKGRGNCGLITASAYSVESLVRHFPEEFQSHLDD 430
>UniRef50_Q6AQG1 Cluster: Probable NADP-reducing hydrogenase, 51 kDa
subunit; n=1; Desulfotalea psychrophila|Rep: Probable
NADP-reducing hydrogenase, 51 kDa subunit - Desulfotalea
psychrophila
Length = 634
Score = 97.1 bits (231), Expect = 4e-19
Identities = 52/156 (33%), Positives = 85/156 (54%)
Frame = -2
Query: 646 KELIERHAGGVTGGWDNLLAIIPGGSSTPLIPKNVCETVLMDFDGLVAAQTSLGTAAIIV 467
+E++ GG+ G AI GG S +P + +T + D+D LV+A +G+ ++V
Sbjct: 403 REIVFELGGGMVGE-SPFKAIQSGGPSGGCLPAHTLDTPV-DYDSLVSAGAMMGSGGLVV 460
Query: 466 MDKSTNIVKAIARLIMFYKHESCGQCTPCREGVSWMNKIIYRFVDGNASPKEIDMLWEIS 287
MD+ST +V + F + ESCGQCT C+ G M I+ V G +I++L E+
Sbjct: 461 MDESTCMVDIARYFLDFTQKESCGQCTLCKLGTKQMLNILEDIVAGRGKEGDIELLLEVG 520
Query: 286 KQIEGHTICALGDGAAWPVQGLIRHFRPELERRMQE 179
+ + ++C LG AA PV I++FR E E +++
Sbjct: 521 EAVNAGSLCGLGKSAANPVLTTIKYFRDEYEAHIRD 556
>UniRef50_A3ETZ6 Cluster: NADH ubiquinone oxidoreductase; n=1;
Leptospirillum sp. Group II UBA|Rep: NADH ubiquinone
oxidoreductase - Leptospirillum sp. Group II UBA
Length = 627
Score = 96.3 bits (229), Expect = 8e-19
Identities = 60/203 (29%), Positives = 100/203 (49%), Gaps = 1/203 (0%)
Frame = -2
Query: 646 KELIERHAGGVTGGWDNLLAIIPGGSSTP-LIPKNVCETVLMDFDGLVAAQTSLGTAAII 470
+ LIE GG+ GG +L ++P GS++ L+P+++ + +D+ + LG+A++I
Sbjct: 436 RSLIEDLGGGIPGG-RSLKGLLPAGSASKMLLPRHL--DLSLDYPSIAEVGAFLGSASVI 492
Query: 469 VMDKSTNIVKAIARLIMFYKHESCGQCTPCREGVSWMNKIIYRFVDGNASPKEIDMLWEI 290
VMD S +V + F HESCGQCTPCR+G + +I+ + V G P +D+L I
Sbjct: 493 VMDDSVCMVDLAYWIAAFSHHESCGQCTPCRDGTEDVYEILLKIVQGEGKPAYLDLLKSI 552
Query: 289 SKQIEGHTICALGDGAAWPVQGLIRHFRPELERRMQEYSAAHGPSKAERLY**CNTRRTS 110
+ +IC LG A + +F E + ++ + G C+ RR
Sbjct: 553 GTYMREASICGLGQSAPNIPLSSMEYFEDEWKAHIENHVCPAGV---------CSMRRDG 603
Query: 109 TLHFESIEGTIVQRKMQRDHFSV 41
L F + ++ + HFSV
Sbjct: 604 ILLFPPRRSRGIVAELPQMHFSV 626
>UniRef50_Q2AG83 Cluster: 4Fe-4S ferredoxin, iron-sulfur
binding:Respiratory-chain NADH dehydrogenase domain, 51
kDa subunit; n=4; Bacteria|Rep: 4Fe-4S ferredoxin,
iron-sulfur binding:Respiratory-chain NADH dehydrogenase
domain, 51 kDa subunit - Halothermothrix orenii H 168
Length = 632
Score = 95.9 bits (228), Expect = 1e-18
Identities = 54/171 (31%), Positives = 96/171 (56%), Gaps = 1/171 (0%)
Frame = -2
Query: 646 KELIERHAGGVTGGWDNLLAIIPGGSSTPLIPKNVCETVLMDFDGLVAAQTSLGTAAIIV 467
+EL+ GG+ + A+ GG S + + + + MDFD L +G+ ++V
Sbjct: 410 RELVYDIGGGIKNN-NKFKAVQIGGPSGGCLTEEHLD-MPMDFDSLQEVGAMIGSGGLVV 467
Query: 466 MDKSTNIVKAIARLIM-FYKHESCGQCTPCREGVSWMNKIIYRFVDGNASPKEIDMLWEI 290
MD++T +V+ +AR M F ++ESCG+C CREG M KI+ R V+G + +++D+L E+
Sbjct: 468 MDENTCMVE-VARFFMEFTQNESCGKCVLCREGTKQMLKILERIVEGKGTMEDLDLLEEL 526
Query: 289 SKQIEGHTICALGDGAAWPVQGLIRHFRPELERRMQEYSAAHGPSKAERLY 137
+ ++ ++C LG A PV +++FR E E +++ G +A + Y
Sbjct: 527 ALAVKDGSLCGLGKTAPNPVLTTLKYFRDEYEAHVKDKKCPAGVCEALKSY 577
>UniRef50_A4MHV7 Cluster: NADH dehydrogenase; n=5; Bacteria|Rep:
NADH dehydrogenase - Geobacter bemidjiensis Bem
Length = 593
Score = 95.1 bits (226), Expect = 2e-18
Identities = 49/151 (32%), Positives = 81/151 (53%)
Frame = -2
Query: 646 KELIERHAGGVTGGWDNLLAIIPGGSSTPLIPKNVCETVLMDFDGLVAAQTSLGTAAIIV 467
+++I + GG+ A+ GG S IP V +T + D+D L+ A +G+ ++V
Sbjct: 373 RDVIYKVCGGIANN-RKFKAVQAGGPSGGCIPAEVLDTPV-DYDSLIKAGAMMGSGGLVV 430
Query: 466 MDKSTNIVKAIARLIMFYKHESCGQCTPCREGVSWMNKIIYRFVDGNASPKEIDMLWEIS 287
MD++T +V + F K ESCG+C PCR G+ M I+ + +G +ID L E+
Sbjct: 431 MDETTCMVDVARFFLTFTKMESCGKCVPCRIGLKAMLDILEKITEGRGEMADIDTLLEMG 490
Query: 286 KQIEGHTICALGDGAAWPVQGLIRHFRPELE 194
I+ ++C LG A P+ +++FR E E
Sbjct: 491 ATIKKASLCGLGQTAPNPILSTVKYFRNEYE 521
>UniRef50_Q9I0J7 Cluster: NADH-quinone oxidoreductase subunit F;
n=78; Bacteria|Rep: NADH-quinone oxidoreductase subunit
F - Pseudomonas aeruginosa
Length = 448
Score = 94.3 bits (224), Expect = 3e-18
Identities = 55/167 (32%), Positives = 90/167 (53%), Gaps = 3/167 (1%)
Frame = -2
Query: 646 KELIERHAGGVTGGWDNLLAIIPGGSSTP-LIPKNVCETVLMDFDGLVAAQTSLGTAAII 470
+EL E +AGG+ G+ L A PGG+ T L+P+++ M G+ T +GT +
Sbjct: 281 RELFEDYAGGMRDGFQ-LKAWQPGGAGTGFLLPEHL--DAQMFAGGIAKVGTRMGTGLAM 337
Query: 469 VMDKSTNIVKAIARLIMFYKHESCGQCTPCREGVSWMNKIIYRFVDGNASPKEIDMLWEI 290
+D S N+V + + F+ ESCG CTPCR+G+ W K++ G P +++ L ++
Sbjct: 338 AVDDSINMVSLLRNMEEFFARESCGWCTPCRDGLPWSVKLLRALERGEGQPGDLETLEQL 397
Query: 289 SKQI-EGHTICALGDGAAWPVQGLIRHFRPELERRM-QEYSAAHGPS 155
+ G T CA GA P+ +++FR E E + ++ SAA P+
Sbjct: 398 VNFLGPGKTFCAHAPGAVEPLGSALKYFRAEFEAGISRQPSAAPRPA 444
>UniRef50_Q6N1Z2 Cluster: NADH-ubiquinone dehydrogenase chain F;
n=8; Alphaproteobacteria|Rep: NADH-ubiquinone
dehydrogenase chain F - Rhodopseudomonas palustris
Length = 428
Score = 93.9 bits (223), Expect = 4e-18
Identities = 55/148 (37%), Positives = 80/148 (54%), Gaps = 2/148 (1%)
Frame = -2
Query: 646 KELIERHAGGVTGGWDNLLAIIPGGSSTPLIPKNVCETVLMDFDGLVAAQTSLGTAAIIV 467
+EL+ R AGG+ G LLA PGG +T K + V +DF A +SLGT A+IV
Sbjct: 267 RELLHR-AGGIRNG-RGLLAFQPGGGATAFFEKAELD-VPLDFTSTKKAGSSLGTGALIV 323
Query: 466 MDKSTNIVKAIARLIMFYKHESCGQCTPCREGVSWMNKIIYRFVDGNASPKEIDMLWE-- 293
+D V AI R + FY ESCG CTPCR+G+ W++K++ G + +I++L +
Sbjct: 324 LDDRACPVAAIGRHMRFYARESCGLCTPCRDGLPWVSKLLDALEAGKGTQGDIEVLHQHV 383
Query: 292 ISKQIEGHTICALGDGAAWPVQGLIRHF 209
G + C L GA P++ + F
Sbjct: 384 ALSGPSGRSYCDLNTGALTPLRSGLERF 411
>UniRef50_Q9WY70 Cluster: NADP-reducing hydrogenase, subunit C; n=9;
Bacteria|Rep: NADP-reducing hydrogenase, subunit C -
Thermotoga maritima
Length = 545
Score = 92.7 bits (220), Expect = 1e-17
Identities = 48/151 (31%), Positives = 80/151 (52%)
Frame = -2
Query: 646 KELIERHAGGVTGGWDNLLAIIPGGSSTPLIPKNVCETVLMDFDGLVAAQTSLGTAAIIV 467
++LI + GG+ GG L + GGS+ I + + V +DFD SLG+ I+V
Sbjct: 368 RDLIFKFGGGIEGG-RKLKVVQTGGSAGTFIGPDKLD-VPLDFDSYAKYGVSLGSGVILV 425
Query: 466 MDKSTNIVKAIARLIMFYKHESCGQCTPCREGVSWMNKIIYRFVDGNASPKEIDMLWEIS 287
D++ +V ++ F++HESCG+CTPCREG + I+ R G +++D L EI+
Sbjct: 426 ADETHCVVDLALTVMRFFEHESCGKCTPCREGTRMIVNILERISRGEGKKEDLDTLREIA 485
Query: 286 KQIEGHTICALGDGAAWPVQGLIRHFRPELE 194
+ + C LG P+ ++ +F E +
Sbjct: 486 RNAGETSFCGLGQSIPVPLLSIVDNFEEEFK 516
>UniRef50_Q2LS97 Cluster: NADH-quinone oxidoreductase chain F; n=2;
Syntrophus aciditrophicus SB|Rep: NADH-quinone
oxidoreductase chain F - Syntrophus aciditrophicus
(strain SB)
Length = 638
Score = 92.3 bits (219), Expect = 1e-17
Identities = 46/152 (30%), Positives = 86/152 (56%)
Frame = -2
Query: 646 KELIERHAGGVTGGWDNLLAIIPGGSSTPLIPKNVCETVLMDFDGLVAAQTSLGTAAIIV 467
+E+IE G+ G A + GGS+ ++ + + L D D + A +LG+ ++V
Sbjct: 468 REIIETFGKGIKNGKTFKFAQV-GGSAGGILGPELMDLPL-DIDSTIKAGVTLGSGVVLV 525
Query: 466 MDKSTNIVKAIARLIMFYKHESCGQCTPCREGVSWMNKIIYRFVDGNASPKEIDMLWEIS 287
D+ T V + ++ F++HESCGQC PCR G ++ + +F G A P ++D++ E +
Sbjct: 526 CDEDTCPVDFLLDVLNFFEHESCGQCVPCRVGTRQLHHLARKFATGTAVPGDLDLMVEKA 585
Query: 286 KQIEGHTICALGDGAAWPVQGLIRHFRPELER 191
K ++ +++CALG P+ ++++FR + R
Sbjct: 586 KLMK-NSLCALGQSPILPITTMLKYFREDFLR 616
>UniRef50_Q3ZXP7 Cluster: Hydrogenase subunit HymB; n=7;
Bacteria|Rep: Hydrogenase subunit HymB - Dehalococcoides
sp. (strain CBDB1)
Length = 640
Score = 89.8 bits (213), Expect = 7e-17
Identities = 50/166 (30%), Positives = 88/166 (53%)
Frame = -2
Query: 646 KELIERHAGGVTGGWDNLLAIIPGGSSTPLIPKNVCETVLMDFDGLVAAQTSLGTAAIIV 467
+++I + GG+ G + A+ GG S IP+N+ ++ + D+D L + +G+ +I+
Sbjct: 395 RDIIFKIGGGLRDG-KKIKAVQTGGPSGGCIPENLLDSPV-DYDALSKLGSMVGSGGLII 452
Query: 466 MDKSTNIVKAIARLIMFYKHESCGQCTPCREGVSWMNKIIYRFVDGNASPKEIDMLWEIS 287
MD+ T +V I F ESCG+C PCREG+ + I+ R +G + ++D L ++S
Sbjct: 453 MDEETCMVDIARYFINFLSDESCGKCLPCREGLRQLVDILTRITEGKGTMVDMDTLEDLS 512
Query: 286 KQIEGHTICALGDGAAWPVQGLIRHFRPELERRMQEYSAAHGPSKA 149
+ +CALG A P+ +++FR E ++ G KA
Sbjct: 513 GVMSEACLCALGQQAPNPLLTTLKYFRHEYIDHIKNKHCEAGVCKA 558
>UniRef50_O27592 Cluster: NADP-reducing hydrogenase, subunit C; n=4;
cellular organisms|Rep: NADP-reducing hydrogenase,
subunit C - Methanobacterium thermoautotrophicum
Length = 630
Score = 88.2 bits (209), Expect = 2e-16
Identities = 46/149 (30%), Positives = 81/149 (54%)
Frame = -2
Query: 646 KELIERHAGGVTGGWDNLLAIIPGGSSTPLIPKNVCETVLMDFDGLVAAQTSLGTAAIIV 467
+E+I GGV G L A+ GG S +P + +T + D+D L +A +G+ ++V
Sbjct: 391 REVIFDIGGGVVDG--ELKAVQIGGPSGGCLPAELIDTGI-DYDSLTSAGAIMGSGGLVV 447
Query: 466 MDKSTNIVKAIARLIMFYKHESCGQCTPCREGVSWMNKIIYRFVDGNASPKEIDMLWEIS 287
+ T +V+ + F + ESCG+C PCR G M I+ V+G+ P++ D+L +++
Sbjct: 448 LSDRTCMVELARYFLEFTQRESCGKCVPCRVGTRQMLMILNDIVEGSGRPEDPDILRDVA 507
Query: 286 KQIEGHTICALGDGAAWPVQGLIRHFRPE 200
+ + ++C LG + PV +R+F E
Sbjct: 508 ESVRAASLCGLGQTSPNPVLTTLRYFEDE 536
>UniRef50_Q8ABI5 Cluster: NADH:ubiquinone oxidoreductase subunit;
n=91; cellular organisms|Rep: NADH:ubiquinone
oxidoreductase subunit - Bacteroides thetaiotaomicron
Length = 635
Score = 87.4 bits (207), Expect = 4e-16
Identities = 47/149 (31%), Positives = 80/149 (53%)
Frame = -2
Query: 646 KELIERHAGGVTGGWDNLLAIIPGGSSTPLIPKNVCETVLMDFDGLVAAQTSLGTAAIIV 467
+E+I GG+ GG A+ GG S + + +T + DFD L+AA + +G+ +IV
Sbjct: 413 REVIYEIGGGIKGG-KKFKAVQTGGPSGGCLTEKHLDTPI-DFDNLLAAGSMMGSGGMIV 470
Query: 466 MDKSTNIVKAIARLIMFYKHESCGQCTPCREGVSWMNKIIYRFVDGNASPKEIDMLWEIS 287
MD+ +V + F ESCG+CTPCR G + +++ + +G + K++D L +
Sbjct: 471 MDEDDCMVSVARFYLDFTVEESCGKCTPCRIGNKRLLELLNKITEGRGTEKDLDTLATLG 530
Query: 286 KQIEGHTICALGDGAAWPVQGLIRHFRPE 200
+ I+ +C LG + PV + +FR E
Sbjct: 531 RVIKDTALCGLGQTSPNPVLSTLDNFRDE 559
Score = 33.1 bits (72), Expect = 8.2
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = -1
Query: 752 FASFGRQRNXGTKLFKISGHVNTPCTVEEEMSIPLQ 645
FAS G +R+ GTK+F ++G +N +E M L+
Sbjct: 378 FASIGTERSKGTKVFALAGKINNVGLIEVPMGTTLR 413
>UniRef50_A6GJI0 Cluster: Putative NADH dehydrogenase I chain F;
n=1; Plesiocystis pacifica SIR-1|Rep: Putative NADH
dehydrogenase I chain F - Plesiocystis pacifica SIR-1
Length = 503
Score = 85.8 bits (203), Expect = 1e-15
Identities = 49/150 (32%), Positives = 85/150 (56%)
Frame = -2
Query: 643 ELIERHAGGVTGGWDNLLAIIPGGSSTPLIPKNVCETVLMDFDGLVAAQTSLGTAAIIVM 464
EL+E AGG G A PGG+S+ +P ++ L DF GL + LG+A ++V+
Sbjct: 358 ELVEA-AGGYVG---TPKAFSPGGASSGFLPMDLRGEPL-DFGGLAKLGSMLGSAGVVVL 412
Query: 463 DKSTNIVKAIARLIMFYKHESCGQCTPCREGVSWMNKIIYRFVDGNASPKEIDMLWEISK 284
+ + ++ A +F++ ESCGQC PCR G + I +F+D A P+ + + E++
Sbjct: 413 NDTVDMAVAARWQQIFFEDESCGQCAPCRIGCRVQRQAIDKFLDARA-PESLGHVEEVAW 471
Query: 283 QIEGHTICALGDGAAWPVQGLIRHFRPELE 194
+++ +IC LG A+ P+Q +++F E +
Sbjct: 472 EMDAGSICGLGMVASLPLQSAMKYFGEEFD 501
>UniRef50_A5FSK8 Cluster: NADH dehydrogenase; n=3;
Dehalococcoides|Rep: NADH dehydrogenase -
Dehalococcoides sp. BAV1
Length = 417
Score = 85.8 bits (203), Expect = 1e-15
Identities = 49/149 (32%), Positives = 81/149 (54%)
Frame = -2
Query: 646 KELIERHAGGVTGGWDNLLAIIPGGSSTPLIPKNVCETVLMDFDGLVAAQTSLGTAAIIV 467
K+L+E GGV G + A++PGG S+ L+ + + +DF L A T LG+ A+IV
Sbjct: 262 KDLLEA-GGGVDGKFK---AVLPGGISSSLLTET---DISLDFKTLAKAGTMLGSGAVIV 314
Query: 466 MDKSTNIVKAIARLIMFYKHESCGQCTPCREGVSWMNKIIYRFVDGNASPKEIDMLWEIS 287
++ T++V + + F+ E CG+C+ CREG +I+ RF G + E++ L E+
Sbjct: 315 INSDTSMVNVASNVAHFFDEEGCGKCSICREGTRRAAEILSRFSRGQGNRNELEWLLELH 374
Query: 286 KQIEGHTICALGDGAAWPVQGLIRHFRPE 200
+ ++ C LG A IR+F+ E
Sbjct: 375 EVMKDTASCGLGQVALNVAASAIRNFKGE 403
>UniRef50_Q835I8 Cluster: NAD-dependent formate dehydrogenase, beta
subunit, putative; n=1; Enterococcus faecalis|Rep:
NAD-dependent formate dehydrogenase, beta subunit,
putative - Enterococcus faecalis (Streptococcus
faecalis)
Length = 417
Score = 83.8 bits (198), Expect = 4e-15
Identities = 46/147 (31%), Positives = 75/147 (51%)
Frame = -2
Query: 634 ERHAGGVTGGWDNLLAIIPGGSSTPLIPKNVCETVLMDFDGLVAAQTSLGTAAIIVMDKS 455
E++ GG G L I GG S P+ L ++ L A S+G+ AI+VMD S
Sbjct: 257 EQYGGGSATG-RALKFIHFGGQSGPIGAVATLRDCLYSYEDLWAHDLSVGSGAIVVMDDS 315
Query: 454 TNIVKAIARLIMFYKHESCGQCTPCREGVSWMNKIIYRFVDGNASPKEIDMLWEISKQIE 275
N+V + + F+ HESCG+CTPCR G + + +++ +F A+ ++ L ++ +
Sbjct: 316 VNVVDYLVHVAAFFAHESCGKCTPCRLGTTRILELLSKFNRNEATASDLPRLEKMLTHVT 375
Query: 274 GHTICALGDGAAWPVQGLIRHFRPELE 194
+ C LG A P++ + F E E
Sbjct: 376 RLSACGLGQSVANPMKSALALFPEEFE 402
>UniRef50_A1WBG0 Cluster: NADH dehydrogenase (Quinone) precursor;
n=6; Proteobacteria|Rep: NADH dehydrogenase (Quinone)
precursor - Acidovorax sp. (strain JS42)
Length = 640
Score = 83.8 bits (198), Expect = 4e-15
Identities = 47/150 (31%), Positives = 84/150 (56%)
Frame = -2
Query: 646 KELIERHAGGVTGGWDNLLAIIPGGSSTPLIPKNVCETVLMDFDGLVAAQTSLGTAAIIV 467
+EL++ + GG+ G L A +PGG+S ++P + + V +DFD L +G+AA+IV
Sbjct: 468 RELVDEYCGGMADG-HVLYAYLPGGASGGILPARLSD-VPLDFDTLQPHGCFIGSAAVIV 525
Query: 466 MDKSTNIVKAIARLIMFYKHESCGQCTPCREGVSWMNKIIYRFVDGNASPKEIDMLWEIS 287
+ + A ++ F+ HESCGQCTPCR G + +++ A + D L +++
Sbjct: 526 LSQHDRARDAALNMMRFFAHESCGQCTPCRVGTAKAAQLM------QAPLWDEDTLDDLA 579
Query: 286 KQIEGHTICALGDGAAWPVQGLIRHFRPEL 197
+ + +IC LG A P++ + ++F E+
Sbjct: 580 QVMADASICGLGQAAPNPIRCIHKYFAHEV 609
>UniRef50_UPI0000384AE3 Cluster: COG1894: NADH:ubiquinone
oxidoreductase, NADH-binding (51 kD) subunit; n=1;
Magnetospirillum magnetotacticum MS-1|Rep: COG1894:
NADH:ubiquinone oxidoreductase, NADH-binding (51 kD)
subunit - Magnetospirillum magnetotacticum MS-1
Length = 514
Score = 82.6 bits (195), Expect = 1e-14
Identities = 53/150 (35%), Positives = 81/150 (54%), Gaps = 1/150 (0%)
Frame = -2
Query: 643 ELIERHAGGVTGGWDNLLAIIPGGSSTPLIPKNVCETVLMDFDGLVAAQTSLGTAAIIVM 464
ELIE GG+ G L A +PGG+S +P +V T + F + +G+AA++V
Sbjct: 374 ELIEEFCGGMEDG-HQLRAYLPGGASGGFLPAHV--TPPLAFGAIEEHGGFIGSAAVVVF 430
Query: 463 DKSTNIVKAIARLIMFYKHESCGQCTPCREGVSWMNKIIYRFVDGNASPK-EIDMLWEIS 287
+ ++ L F+ HESCGQCTPCR G + + D ASP+ + D+L +++
Sbjct: 431 SQEDDLRAHALNLARFFAHESCGQCTPCRVGTA-------KAADLLASPRWDEDLLNDLA 483
Query: 286 KQIEGHTICALGDGAAWPVQGLIRHFRPEL 197
+ + +IC LG A Q L+RHF PE+
Sbjct: 484 QVMRDASICGLGQAAPNVWQSLLRHF-PEV 512
>UniRef50_Q5P4U3 Cluster: Formate dehydrogenase, NAD(P) reducing,
beta subunit; n=41; Proteobacteria|Rep: Formate
dehydrogenase, NAD(P) reducing, beta subunit - Azoarcus
sp. (strain EbN1) (Aromatoleum aromaticum (strain EbN1))
Length = 585
Score = 81.4 bits (192), Expect = 2e-14
Identities = 48/150 (32%), Positives = 76/150 (50%)
Frame = -2
Query: 646 KELIERHAGGVTGGWDNLLAIIPGGSSTPLIPKNVCETVLMDFDGLVAAQTSLGTAAIIV 467
+EL+E H GG+ G + L PGG+S ++P + + L DFD L +G+AAI+V
Sbjct: 433 RELVEEHCGGMLPGHE-LYGYFPGGASGGMLPARLADMPL-DFDTLGEYGCFIGSAAIVV 490
Query: 466 MDKSTNIVKAIARLIMFYKHESCGQCTPCREGVSWMNKIIYRFVDGNASPKEIDMLWEIS 287
+ + F+ HESCGQCTPCR G + +++ + +L E+
Sbjct: 491 FSQHDRARVLAENAMEFFAHESCGQCTPCRVGTAKAAELM------KQPAWDAALLTELG 544
Query: 286 KQIEGHTICALGDGAAWPVQGLIRHFRPEL 197
+ +IC LG A P+Q ++R F E+
Sbjct: 545 TVMMDASICGLGQAAPNPMQSVLRFFPHEV 574
>UniRef50_A7IMB3 Cluster: NADH dehydrogenase; n=3;
Proteobacteria|Rep: NADH dehydrogenase - Xanthobacter
sp. (strain Py2)
Length = 422
Score = 81.4 bits (192), Expect = 2e-14
Identities = 48/151 (31%), Positives = 75/151 (49%)
Frame = -2
Query: 646 KELIERHAGGVTGGWDNLLAIIPGGSSTPLIPKNVCETVLMDFDGLVAAQTSLGTAAIIV 467
+EL+ H GG+ G A+ GG S L+ + V +DFD + ++ LGT A+IV
Sbjct: 267 EELVFVHGGGMLDG-RAFKAVFTGGPSNTLLTARDLD-VALDFDSVKRRKSRLGTGAMIV 324
Query: 466 MDKSTNIVKAIARLIMFYKHESCGQCTPCREGVSWMNKIIYRFVDGNASPKEIDMLWEIS 287
+ + T+IV+ +A + F+ SCGQC C+ G M +++ R G + L +
Sbjct: 325 ISEGTSIVRKVAEYVAFFASGSCGQCPSCKCGTFQMARLLDRIATGRGVEADRQALDHLC 384
Query: 286 KQIEGHTICALGDGAAWPVQGLIRHFRPELE 194
+ + G CAL DGA V+ F E E
Sbjct: 385 RILPGSGRCALIDGAVTVVESSRHTFPDEYE 415
>UniRef50_Q9ZBV8 Cluster: Putative respiratory chain oxidoreductase;
n=2; Streptomyces|Rep: Putative respiratory chain
oxidoreductase - Streptomyces coelicolor
Length = 646
Score = 77.4 bits (182), Expect = 4e-13
Identities = 39/129 (30%), Positives = 71/129 (55%), Gaps = 2/129 (1%)
Frame = -2
Query: 616 VTGGWDNLLAIIPGGSSTPLIPKNVCETVLMDFDGLVAAQTSLGTAAIIVMDKSTNIVKA 437
+ G DNL A++ GG++ + + + + + F+G A T+LG+ ++ D + + +
Sbjct: 506 LAGVRDNLRAVLLGGAAGGFVRPDELD-IPLTFEGTREAGTTLGSGVVMAFDDTVPLPRL 564
Query: 436 IARLIMFYKHESCGQCTPCREGVSWMNKIIYRFVD--GNASPKEIDMLWEISKQIEGHTI 263
+ R+ F++ ESCGQC PCR G + ++R D G A+ +I +L E+ + + +I
Sbjct: 565 LLRIAEFFRDESCGQCVPCRVGTVRQEEALHRIADRTGAAAADDIALLREVGRAMRDASI 624
Query: 262 CALGDGAAW 236
C LG AW
Sbjct: 625 CGLGQ-TAW 632
>UniRef50_Q51696 Cluster: Putative uncharacterized protein ORF2;
n=1; Brevundimonas diminuta|Rep: Putative
uncharacterized protein ORF2 - Brevundimonas diminuta
(Pseudomonas diminuta)
Length = 401
Score = 77.4 bits (182), Expect = 4e-13
Identities = 47/153 (30%), Positives = 76/153 (49%)
Frame = -2
Query: 640 LIERHAGGVTGGWDNLLAIIPGGSSTPLIPKNVCETVLMDFDGLVAAQTSLGTAAIIVMD 461
L+ + GG+ G + A+ PGG ++ +P + + V D L AA +SLG AAI
Sbjct: 251 LLYGYGGGLKSG-QAIRAVQPGGPASGFLPADRFD-VAFDSASLRAAGSSLGCAAITAYA 308
Query: 460 KSTNIVKAIARLIMFYKHESCGQCTPCREGVSWMNKIIYRFVDGNASPKEIDMLWEISKQ 281
S ++V A + F+ SC QC CR + I+ + G A+ + + + I K
Sbjct: 309 ASDDLVAAARQRAAFFASASCEQCPQCRMQTQMLLAIVRQLESGKANARTLQQIPVIVKA 368
Query: 280 IEGHTICALGDGAAWPVQGLIRHFRPELERRMQ 182
G IC L D P+Q LI +F+ +++ RM+
Sbjct: 369 NAGKAICGLIDMPVAPIQSLIHYFKGDIDARMR 401
>UniRef50_A6PMG7 Cluster: NADH dehydrogenase (Quinone) precursor;
n=1; Victivallis vadensis ATCC BAA-548|Rep: NADH
dehydrogenase (Quinone) precursor - Victivallis vadensis
ATCC BAA-548
Length = 573
Score = 77.4 bits (182), Expect = 4e-13
Identities = 42/141 (29%), Positives = 75/141 (53%)
Frame = -2
Query: 601 DNLLAIIPGGSSTPLIPKNVCETVLMDFDGLVAAQTSLGTAAIIVMDKSTNIVKAIARLI 422
+ + A+ GG S IP + +T + D+D L +G+ +IV+ K +V+ +
Sbjct: 364 EKVKAVQTGGPSGGCIPVELFDTPV-DYDSLRKLGAIMGSGGMIVIGKDRCMVETARYFL 422
Query: 421 MFYKHESCGQCTPCREGVSWMNKIIYRFVDGNASPKEIDMLWEISKQIEGHTICALGDGA 242
F ESCG+CT CR G + M + + R V G S +++ +L ++ +I ++C LG A
Sbjct: 423 DFTHRESCGKCTFCRVGTTRMYETLERIVAGKGSMEDLALLEDLGPKIRMGSLCGLGQTA 482
Query: 241 AWPVQGLIRHFRPELERRMQE 179
PV +R++R E E +++
Sbjct: 483 PNPVLATLRYYRHEYEAHVRD 503
>UniRef50_Q47HE6 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa
subunit:Respiratory-chain NADH dehydrogenase domain, 51
kDa subunit; n=1; Dechloromonas aromatica RCB|Rep: NADH
dehydrogenase (Ubiquinone), 24 kDa
subunit:Respiratory-chain NADH dehydrogenase domain, 51
kDa subunit - Dechloromonas aromatica (strain RCB)
Length = 632
Score = 75.8 bits (178), Expect = 1e-12
Identities = 36/125 (28%), Positives = 64/125 (51%)
Frame = -2
Query: 553 PKNVCETVLMDFDGLVAAQTSLGTAAIIVMDKSTNIVKAIARLIMFYKHESCGQCTPCRE 374
P +C +FD ++ + A V + + ++ + + F++HESCG CTPCR
Sbjct: 472 PSGIC-IAEQEFDRVIGFEDIPTAGAFTVFNNTRDMFEVARNYVHFFQHESCGFCTPCRV 530
Query: 373 GVSWMNKIIYRFVDGNASPKEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELE 194
G S + ++ + +G SP + + ++++ ++ + C LG A PV I FRP E
Sbjct: 531 GTSLLKNLMDKLHNGVGSPYDFAEIEKLNQLLQSMSHCGLGHTACNPVLDTIERFRPAYE 590
Query: 193 RRMQE 179
RRM +
Sbjct: 591 RRMAQ 595
>UniRef50_A0NMW4 Cluster: NADH:ubiquinone oxidoreductase,
NADH-binding (51 kD) subunit; n=2; Proteobacteria|Rep:
NADH:ubiquinone oxidoreductase, NADH-binding (51 kD)
subunit - Stappia aggregata IAM 12614
Length = 626
Score = 72.5 bits (170), Expect = 1e-11
Identities = 44/133 (33%), Positives = 70/133 (52%)
Frame = -2
Query: 607 GWDNLLAIIPGGSSTPLIPKNVCETVLMDFDGLVAAQTSLGTAAIIVMDKSTNIVKAIAR 428
G ++ A+ GG S +I ++ L FD L AIIV + N+++ +
Sbjct: 456 GGEDAAAVQVGGPSGTMIARDSFHRKLT-FDDLATG------GAIIVFNGERNVLEIVEY 508
Query: 427 LIMFYKHESCGQCTPCREGVSWMNKIIYRFVDGNASPKEIDMLWEISKQIEGHTICALGD 248
+ F+ HESCG CTPCR G ++ K I +F G A+P++ID L ++S I + C LG
Sbjct: 509 YMSFFVHESCGYCTPCRVGNVFLQKAIQKFRKGLANPEDIDYLKDLSGTIIETSRCGLGM 568
Query: 247 GAAWPVQGLIRHF 209
+ PV +++F
Sbjct: 569 TSPNPVLTTLKNF 581
>UniRef50_Q3A639 Cluster: NADH:ubiquinone oxidoreductase,
NADH-binding (51 kD) subunit; n=1; Pelobacter
carbinolicus DSM 2380|Rep: NADH:ubiquinone
oxidoreductase, NADH-binding (51 kD) subunit -
Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1)
Length = 571
Score = 69.7 bits (163), Expect = 8e-11
Identities = 44/146 (30%), Positives = 69/146 (47%)
Frame = -2
Query: 619 GVTGGWDNLLAIIPGGSSTPLIPKNVCETVLMDFDGLVAAQTSLGTAAIIVMDKSTNIVK 440
G+ NL A+ GG S IPK+ V +D++ L +G+ +I M + V
Sbjct: 420 GIVSPDKNLKAVQLGGPSGGCIPKDYMH-VAVDYETLQEYGAIMGSGGLIAMSDDKSGVD 478
Query: 439 AIARLIMFYKHESCGQCTPCREGVSWMNKIIYRFVDGNASPKEIDMLWEISKQIEGHTIC 260
I F + E+CG+C P REG M +I+ + G SP +I+ L + I +C
Sbjct: 479 IAKFFIDFCQDEACGKCLPGREGTKQMLQILEKIDSGEGSPDDIETLKVLCGVIRKTALC 538
Query: 259 ALGDGAAWPVQGLIRHFRPELERRMQ 182
AL A PV +R+F E + ++
Sbjct: 539 ALCKTAVNPVLSTLRYFPEEYQEAVK 564
>UniRef50_O66841 Cluster: NADH-quinone oxidoreductase subunit F;
n=2; Aquifex aeolicus|Rep: NADH-quinone oxidoreductase
subunit F - Aquifex aeolicus
Length = 426
Score = 68.1 bits (159), Expect = 2e-10
Identities = 31/99 (31%), Positives = 56/99 (56%)
Frame = -2
Query: 487 GTAAIIVMDKSTNIVKAIARLIMFYKHESCGQCTPCREGVSWMNKIIYRFVDGNASPKEI 308
GT +IV+ + +IV+A ++ FY+HE+CGQCTPCR G ++ + G A+ ++
Sbjct: 318 GTGTVIVLTEEDDIVEAALKIAEFYEHETCGQCTPCRVGCYEQANLLEKIYKGEATEQDW 377
Query: 307 DMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELER 191
+ +++ I+ +IC LG A ++ + F E E+
Sbjct: 378 EGFDFVNRNIQPTSICGLGAVAGRLIRQTLEKFPEEWEK 416
>UniRef50_A5N6F8 Cluster: NADH dehydrogenase-related protein; n=1;
Clostridium kluyveri DSM 555|Rep: NADH
dehydrogenase-related protein - Clostridium kluyveri DSM
555
Length = 320
Score = 67.3 bits (157), Expect = 4e-10
Identities = 35/108 (32%), Positives = 57/108 (52%)
Frame = -2
Query: 475 IIVMDKSTNIVKAIARLIMFYKHESCGQCTPCREGVSWMNKIIYRFVDGNASPKEIDMLW 296
II+ D++ +V + + F E CG+C PCREGV M ++ +GNA ++I+ +
Sbjct: 154 IIIGDRNC-MVDVVKDYLNFLSKEFCGKCIPCREGVKRMLEMATDICEGNAKERDIENML 212
Query: 295 EISKQIEGHTICALGDGAAWPVQGLIRHFRPELERRMQEYSAAHGPSK 152
++S I ++C LG A P+ IR+FR E E ++ G K
Sbjct: 213 QMSYVISQASLCNLGKRAQNPIMIAIRYFRDEFEEHLKNKRCRQGVCK 260
>UniRef50_A6LZW7 Cluster: 4Fe-4S ferredoxin, iron-sulfur binding
domain protein; n=1; Clostridium beijerinckii NCIMB
8052|Rep: 4Fe-4S ferredoxin, iron-sulfur binding domain
protein - Clostridium beijerinckii NCIMB 8052
Length = 414
Score = 66.1 bits (154), Expect = 9e-10
Identities = 39/154 (25%), Positives = 76/154 (49%)
Frame = -2
Query: 646 KELIERHAGGVTGGWDNLLAIIPGGSSTPLIPKNVCETVLMDFDGLVAAQTSLGTAAIIV 467
+E+I + GG T + + GG++ + + +T + + L+ T L + I V
Sbjct: 157 REIISEYGGG-TESEKAIKFVQVGGNTGAVFTEEELDTPFL-YSNLIGNGTMLEVSKIEV 214
Query: 466 MDKSTNIVKAIARLIMFYKHESCGQCTPCREGVSWMNKIIYRFVDGNASPKEIDMLWEIS 287
+ +V + + ++ E+CG+C CREG+ + KII +G +I++ ++S
Sbjct: 215 YNVDMCVVNWVTQKMLDNSKETCGKCVYCREGIYQLYKIIKDATEGKGKESDINLALQLS 274
Query: 286 KQIEGHTICALGDGAAWPVQGLIRHFRPELERRM 185
+ I+ T+C G A+ P+ I FR E E+ +
Sbjct: 275 ETIKIGTLCDFGRTASNPLYTAINKFRDEFEKHI 308
>UniRef50_Q2AFM4 Cluster: Respiratory-chain NADH dehydrogenase
domain, 51 kDa subunit; n=2; Bacteria|Rep:
Respiratory-chain NADH dehydrogenase domain, 51 kDa
subunit - Halothermothrix orenii H 168
Length = 408
Score = 65.3 bits (152), Expect = 2e-09
Identities = 41/151 (27%), Positives = 74/151 (49%), Gaps = 1/151 (0%)
Frame = -2
Query: 646 KELIERHAGGVTGGWDNLLAIIPGGSSTPLIPKNVCETVLMDFDGLVAAQTSLGTAAIIV 467
KELI+ GGV L +IPGG ST ++ + + + ++ + +SLG+ A++V
Sbjct: 255 KELIDTFGGGVKCS-SGLKFVIPGGISTSVLKDDELD-IPYTYEDIEKKGSSLGSGAVVV 312
Query: 466 MDKSTNIVKAIARLIMFYKHESCGQCTPCREGVSWMNKII-YRFVDGNASPKEIDMLWEI 290
+ + + + + F+ E+CG C PCREG ++ ++ + DG E ++ +I
Sbjct: 313 VSEDHYLPDLMLNVSRFFMDETCGTCFPCREGNRRVHLLLKNKISDGRFDRDEKKLISDI 372
Query: 289 SKQIEGHTICALGDGAAWPVQGLIRHFRPEL 197
+ I C LG + V ++ F EL
Sbjct: 373 GRAIHLAARCGLGQTSLNFVTSVLNKFEDEL 403
>UniRef50_Q7WMR8 Cluster: NAD-dependent formate dehydrogenase beta
subunit; n=107; Bacteria|Rep: NAD-dependent formate
dehydrogenase beta subunit - Bordetella bronchiseptica
(Alcaligenes bronchisepticus)
Length = 526
Score = 63.3 bits (147), Expect = 7e-09
Identities = 40/150 (26%), Positives = 74/150 (49%), Gaps = 1/150 (0%)
Frame = -2
Query: 646 KELIERHAGGVTGGWDNLLAIIPGGSSTPLIPKNVCETVLMDFDGLVAAQTSLGTAAIIV 467
++L+ GG G L A+ GG +P++ + V +D++ V +G ++
Sbjct: 367 RDLLYGFGGGSASGRP-LRAVQVGGPLGAYLPESQWD-VPLDYEAYVQISAMVGHGGLVA 424
Query: 466 MDKSTNIVKAIARLIMFYKHESCGQCTPCREGVSWMNKIIYRFVDGNASPKE-IDMLWEI 290
D + ++ + + F ESCG+CTPCR G + + I + V G ++ + +L ++
Sbjct: 425 FDDTVDMARMARYAMEFCAIESCGKCTPCRIGSTRGVETIDKIVAGGPQREQRVHLLRDL 484
Query: 289 SKQIEGHTICALGDGAAWPVQGLIRHFRPE 200
+ ++CALG A +PV + HF PE
Sbjct: 485 CDTMLAGSLCALGGMAPYPVLSALNHF-PE 513
>UniRef50_UPI0000E479C5 Cluster: PREDICTED: similar to mitochondrial
complex I subunit NDUFV1; n=1; Strongylocentrotus
purpuratus|Rep: PREDICTED: similar to mitochondrial
complex I subunit NDUFV1 - Strongylocentrotus purpuratus
Length = 319
Score = 62.1 bits (144), Expect = 2e-08
Identities = 27/39 (69%), Positives = 32/39 (82%)
Frame = -2
Query: 646 KELIERHAGGVTGGWDNLLAIIPGGSSTPLIPKNVCETV 530
K LIE+HAGGV GGWDNLLA+IPGGSS +IPK + T+
Sbjct: 83 KFLIEKHAGGVEGGWDNLLAVIPGGSSISMIPKELDLTI 121
Score = 56.0 bits (129), Expect = 1e-06
Identities = 28/46 (60%), Positives = 32/46 (69%), Gaps = 1/46 (2%)
Frame = -2
Query: 646 KELIERHAGGVTGGWDNLLAIIPGGSSTPLIPK-NVCETVLMDFDG 512
K LIE+HAGGV GGWDNLL + GGSST +IPK + E L F G
Sbjct: 201 KFLIEKHAGGVEGGWDNLLTVNSGGSSTSMIPKESSAEGELCGFAG 246
Score = 54.0 bits (124), Expect = 4e-06
Identities = 25/38 (65%), Positives = 28/38 (73%)
Frame = -2
Query: 646 KELIERHAGGVTGGWDNLLAIIPGGSSTPLIPKNVCET 533
K LIE+HAGGV GGWDNLLA+IPGGS P V E+
Sbjct: 40 KFLIEKHAGGVEGGWDNLLAVIPGGSCNVNTPFTVEES 77
Score = 53.2 bits (122), Expect = 7e-06
Identities = 24/36 (66%), Positives = 27/36 (75%)
Frame = -1
Query: 752 FASFGRQRNXGTKLFKISGHVNTPCTVEEEMSIPLQ 645
FA F +RN TKLF ISG+VNTPCTVEE S PL+
Sbjct: 244 FAGFRCERNQATKLFNISGNVNTPCTVEESKSTPLK 279
Score = 53.2 bits (122), Expect = 7e-06
Identities = 22/33 (66%), Positives = 27/33 (81%)
Frame = -2
Query: 646 KELIERHAGGVTGGWDNLLAIIPGGSSTPLIPK 548
K IE+HAGGV GGW++LL + PGGSST +IPK
Sbjct: 279 KFFIEKHAGGVEGGWNDLLTVNPGGSSTSMIPK 311
Score = 34.7 bits (76), Expect = 2.7
Identities = 14/18 (77%), Positives = 16/18 (88%)
Frame = -1
Query: 698 GHVNTPCTVEEEMSIPLQ 645
G+VNTPCTVEE SIPL+
Sbjct: 23 GNVNTPCTVEESKSIPLK 40
>UniRef50_A1HDX5 Cluster: NADH dehydrogenase; n=4; Ralstonia
pickettii|Rep: NADH dehydrogenase - Ralstonia pickettii
12J
Length = 525
Score = 61.3 bits (142), Expect = 3e-08
Identities = 39/152 (25%), Positives = 72/152 (47%), Gaps = 2/152 (1%)
Frame = -2
Query: 643 ELIERHAGGVTGGWDNLLAIIPGGSSTPLIPKNVCETVLMDFDGLVAAQTSLGTAAIIVM 464
+++E+ G+ G L ++ GG ++P + +T L ++ + ++G +I
Sbjct: 377 DVVEQLGQGLRRG--KLNGLMVGGPLAGIVPPTLLDTRL-GYEEMQTIDCAVGHGGVIAF 433
Query: 463 DKSTNIVKAIARLIMFYKHESCGQCTPCREGVSWMNKIIYRFVD--GNASPKEIDMLWEI 290
T+I + +A+++ F ESCG+CTPC G I+ D N P + D +
Sbjct: 434 ADDTSIPRIVAQVLRFGARESCGKCTPCHLG----TPILAAMADAAANRLPVDADRFRRL 489
Query: 289 SKQIEGHTICALGDGAAWPVQGLIRHFRPELE 194
+ ++C G G A VQ + RH+ EL+
Sbjct: 490 IDALAATSLCGHGRGLAEFVQSVRRHYPSELQ 521
>UniRef50_Q603S6 Cluster: NAD-reducing hydrogenase, alpha subunit;
n=9; Proteobacteria|Rep: NAD-reducing hydrogenase, alpha
subunit - Methylococcus capsulatus
Length = 610
Score = 60.9 bits (141), Expect = 4e-08
Identities = 33/137 (24%), Positives = 65/137 (47%)
Frame = -2
Query: 607 GWDNLLAIIPGGSSTPLIPKNVCETVLMDFDGLVAAQTSLGTAAIIVMDKSTNIVKAIAR 428
G ++L + GG S + C+ L ++ L + IV D++ +++
Sbjct: 443 GAADVLGVQIGGPSGTFLSDKECDRKLA-YEDLATG------GSFIVFDRTRDVIGIARN 495
Query: 427 LIMFYKHESCGQCTPCREGVSWMNKIIYRFVDGNASPKEIDMLWEISKQIEGHTICALGD 248
F+ HESCG CTPCR G + + ++ + +G+ + ++ L + + + + C LG
Sbjct: 496 FTHFFAHESCGFCTPCRVGTALLKNLLDKIAEGHGATGDLAELSRLGRFVRSASHCGLGQ 555
Query: 247 GAAWPVQGLIRHFRPEL 197
AA P+ + + PE+
Sbjct: 556 TAANPILSTLERY-PEI 571
>UniRef50_Q18DS5 Cluster: NAD-reducing hydrogenase, alpha subunit;
n=1; Haloquadratum walsbyi DSM 16790|Rep: NAD-reducing
hydrogenase, alpha subunit - Haloquadratum walsbyi
(strain DSM 16790)
Length = 502
Score = 60.5 bits (140), Expect = 5e-08
Identities = 31/101 (30%), Positives = 51/101 (50%), Gaps = 1/101 (0%)
Frame = -2
Query: 493 SLGTAAII-VMDKSTNIVKAIARLIMFYKHESCGQCTPCREGVSWMNKIIYRFVDGNASP 317
+LGT I+ V+ + +V+ + F E+CG+C PCREG + + +++ DG P
Sbjct: 386 NLGTEGIVHVLSEDRCVVEFVGERAQFAAEENCGRCVPCREGTTQLAELLRSLYDGTYQP 445
Query: 316 KEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELE 194
+ ID E+ + + +IC G A P Q + F E E
Sbjct: 446 EAID---ELIRVMTTTSICEFGVNAGRPTQTALNAFESEFE 483
>UniRef50_Q1V283 Cluster: NAD-dependent formate dehydrogenase beta
subunit; n=2; Candidatus Pelagibacter ubique|Rep:
NAD-dependent formate dehydrogenase beta subunit -
Candidatus Pelagibacter ubique HTCC1002
Length = 552
Score = 59.7 bits (138), Expect = 8e-08
Identities = 39/145 (26%), Positives = 71/145 (48%), Gaps = 1/145 (0%)
Frame = -2
Query: 616 VTGGW-DNLLAIIPGGSSTPLIPKNVCETVLMDFDGLVAAQTSLGTAAIIVMDKSTNIVK 440
+ GG+ + + A+ GG +IP E + +DF AA LG A+I+ + K +++
Sbjct: 405 IGGGFKEPIKALQIGGPLGGVIPITEIEKLNLDFQEFTAAGFMLGHASIVSIPKDFPMIE 464
Query: 439 AIARLIMFYKHESCGQCTPCREGVSWMNKIIYRFVDGNASPKEIDMLWEISKQIEGHTIC 260
I L F ESCG+C P R G S+ K ++ + + +L E+ ++ +C
Sbjct: 465 YIHHLFEFSAEESCGKCFPGRLG-SYRGKEMFDQAKNKTAKIPLKLLNELLVTMQKGCLC 523
Query: 259 ALGDGAAWPVQGLIRHFRPELERRM 185
AL P+ ++++F E++ M
Sbjct: 524 ALCGAIPTPIMNILKYFGDEMKDDM 548
>UniRef50_P77907 Cluster: Formate dehydrogenase beta subunit; n=2;
Moorella thermoacetica|Rep: Formate dehydrogenase beta
subunit - Moorella thermoacetica (Clostridium
thermoaceticum)
Length = 707
Score = 57.6 bits (133), Expect = 3e-07
Identities = 25/110 (22%), Positives = 52/110 (47%)
Frame = -2
Query: 490 LGTAAIIVMDKSTNIVKAIARLIMFYKHESCGQCTPCREGVSWMNKIIYRFVDGNASPKE 311
+G ++V D + +++ A+ + ESCG+C PCR G + ++ R G P +
Sbjct: 40 IGWDGLVVTDPAVDLLAALQAYYQAVQGESCGRCVPCRVGTRVIYNVLVRIAGGEGLPSD 99
Query: 310 IDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELERRMQEYSAAHG 161
+D+L ++ + ++C LG A V + ++ L +++ G
Sbjct: 100 LDLLRRVAWIVRDGSLCELGQAGAKAVLDFLDYYSEALRPFLEDSGRVAG 149
>UniRef50_A1SU84 Cluster: Hydrogenase, NADP-reducing subunit C; n=1;
Psychromonas ingrahamii 37|Rep: Hydrogenase,
NADP-reducing subunit C - Psychromonas ingrahamii
(strain 37)
Length = 588
Score = 56.0 bits (129), Expect = 1e-06
Identities = 37/143 (25%), Positives = 65/143 (45%)
Frame = -2
Query: 607 GWDNLLAIIPGGSSTPLIPKNVCETVLMDFDGLVAAQTSLGTAAIIVMDKSTNIVKAIAR 428
G ++ A+ GG S LI V+ FD L + +V ++S +I++
Sbjct: 427 GAQSVQAVQVGGPSGTLITPAEFSRVI-SFDDLHTG------GSFMVFNQSRDILENALN 479
Query: 427 LIMFYKHESCGQCTPCREGVSWMNKIIYRFVDGNASPKEIDMLWEISKQIEGHTICALGD 248
F+ ESCG CTPCR G + + + G + ++D + +++ + G + C LG
Sbjct: 480 FTHFFMQESCGFCTPCRVGTKLIYDLADKVATGQGARLDLDSIKQLNHVMNGMSHCGLGQ 539
Query: 247 GAAWPVQGLIRHFRPELERRMQE 179
AA P+ + F +RM +
Sbjct: 540 RAAEPLLETLEKFPEYFVKRMTD 562
>UniRef50_Q6NDH3 Cluster: Possible oxidoreductase; n=5;
Proteobacteria|Rep: Possible oxidoreductase -
Rhodopseudomonas palustris
Length = 673
Score = 55.6 bits (128), Expect = 1e-06
Identities = 31/124 (25%), Positives = 58/124 (46%), Gaps = 3/124 (2%)
Frame = -2
Query: 523 DFDGLVAAQTSLGTAAIIVMDKSTNIVKAIARLIMFYKHESCGQCTPCREGVSWMNKIIY 344
+FD A + + V D + ++V A+ + +SCG CTPCR G + +
Sbjct: 43 EFDEGNAIRAFIADRGFFVFDPTVSLVDALFHYLKAAAEQSCGACTPCRIGTVLVRDALD 102
Query: 343 RFVDGNASPKEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELERRMQEY---S 173
+ G + +D + + +QI ++C LG A + ++R FR +E+ + ++
Sbjct: 103 QMRRGLDAALTLDDIVMLGEQIRQTSLCGLGQTCAVALLAVLRDFRERIEQELAQHRPIP 162
Query: 172 AAHG 161
A HG
Sbjct: 163 AQHG 166
>UniRef50_A5X3H0 Cluster: HtxX; n=1; Xanthobacter flavus|Rep: HtxX -
Xanthobacter flavus
Length = 496
Score = 55.2 bits (127), Expect = 2e-06
Identities = 40/128 (31%), Positives = 59/128 (46%)
Frame = -2
Query: 625 AGGVTGGWDNLLAIIPGGSSTPLIPKNVCETVLMDFDGLVAAQTSLGTAAIIVMDKSTNI 446
AGG+ G L ++ GGSS L+ C L D L+A LGT IV
Sbjct: 362 AGGMQNG-HALGGLVIGGSSGTLVGAADCRRPLAD---LLAEGLRLGTGGAIVFGADDEP 417
Query: 445 VKAIARLIMFYKHESCGQCTPCREGVSWMNKIIYRFVDGNASPKEIDMLWEISKQIEGHT 266
AR+ + ESCGQC PCR G + +I+ P ++ +L +++ + +
Sbjct: 418 RAIAARMAAYLARESCGQCGPCRIGTAHAARIL-----AAPGPLDLPLLDDLATVMGEGS 472
Query: 265 ICALGDGA 242
+CALG A
Sbjct: 473 LCALGRNA 480
>UniRef50_A0K164 Cluster: NADH dehydrogenase; n=2;
Actinomycetales|Rep: NADH dehydrogenase - Arthrobacter
sp. (strain FB24)
Length = 566
Score = 52.8 bits (121), Expect = 9e-06
Identities = 39/144 (27%), Positives = 64/144 (44%)
Frame = -2
Query: 646 KELIERHAGGVTGGWDNLLAIIPGGSSTPLIPKNVCETVLMDFDGLVAAQTSLGTAAIIV 467
+ ++E GG+ GG L AI GG + + + L D L +LG A I+
Sbjct: 420 RRIVEELGGGLRGG-ATLRAIQIGGPLGGFLGPDDLDVPLSD-TALARHGAALGHAGIVA 477
Query: 466 MDKSTNIVKAIARLIMFYKHESCGQCTPCREGVSWMNKIIYRFVDGNASPKEIDMLWEIS 287
D + + + L F ESCGQC+PCR G +W + + D +P ++
Sbjct: 478 FDDRLSGEQVLRNLWDFAAAESCGQCSPCRVG-TWRGRALAELPD---APDVGSERGDVL 533
Query: 286 KQIEGHTICALGDGAAWPVQGLIR 215
+ + ++CA G V+ L+R
Sbjct: 534 RTMAAGSLCAFGRRVPAAVRSLVR 557
>UniRef50_A6Q1P8 Cluster: FAD-dependent pyridine
nucleotide-disulphide oxidoreductase; n=1; Nitratiruptor
sp. SB155-2|Rep: FAD-dependent pyridine
nucleotide-disulphide oxidoreductase - Nitratiruptor sp.
(strain SB155-2)
Length = 680
Score = 50.0 bits (114), Expect = 7e-05
Identities = 27/116 (23%), Positives = 54/116 (46%), Gaps = 2/116 (1%)
Frame = -2
Query: 508 VAAQTSLGTAAIIVMDKSTNIVKAIARLIMFYK--HESCGQCTPCREGVSWMNKIIYRFV 335
+ ++ +G A I +M ++VK Y+ E+CG+C P R G + + +
Sbjct: 39 IDSKAFIGWAGIALMSDDVDVVKLATEYAKQYQVYSEACGRCAPGRWGGRILYDLFDKIA 98
Query: 334 DGNASPKEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELERRMQEYSAA 167
G +++ L E+SK + + C +G P+ ++ HF E++ +Q A+
Sbjct: 99 RGEGEKSDVEHLKEVSKTMMETSKCEIGRTVPKPLLDILEHFSDEIDDLIQNKRAS 154
>UniRef50_A1SNE6 Cluster: Respiratory-chain NADH dehydrogenase
domain, 51 kDa subunit; n=1; Nocardioides sp. JS614|Rep:
Respiratory-chain NADH dehydrogenase domain, 51 kDa
subunit - Nocardioides sp. (strain BAA-499 / JS614)
Length = 412
Score = 50.0 bits (114), Expect = 7e-05
Identities = 33/133 (24%), Positives = 62/133 (46%)
Frame = -2
Query: 589 AIIPGGSSTPLIPKNVCETVLMDFDGLVAAQTSLGTAAIIVMDKSTNIVKAIARLIMFYK 410
+++ GG +P + D + AA+T LG A ++V + + AR++ +
Sbjct: 266 SLLVGGFHGAWVPWATLVAGRVSVDAMRAAETPLG-AGVVVAPRGCPVAFT-ARVVDYLA 323
Query: 409 HESCGQCTPCREGVSWMNKIIYRFVDGNASPKEIDMLWEISKQIEGHTICALGDGAAWPV 230
+S +C PC G+ + + + VDG P+ ++ L + + G CA DG A V
Sbjct: 324 AQSARRCGPCLNGLPALARAVQEVVDGAGHPERVEGL---AALVTGRGACAHPDGTARLV 380
Query: 229 QGLIRHFRPELER 191
+ ++ F E+ R
Sbjct: 381 RSMLATFPDEVTR 393
>UniRef50_Q73MB5 Cluster: Pyridine nucleotide-disulphide
oxidoreductase family protein; n=3; Bacteria|Rep:
Pyridine nucleotide-disulphide oxidoreductase family
protein - Treponema denticola
Length = 609
Score = 49.2 bits (112), Expect = 1e-04
Identities = 24/75 (32%), Positives = 42/75 (56%)
Frame = -2
Query: 406 ESCGQCTPCREGVSWMNKIIYRFVDGNASPKEIDMLWEISKQIEGHTICALGDGAAWPVQ 227
++CG+C PCR G+ + I+ ++G ++ K +D++ E +K I CALG AA V
Sbjct: 50 QTCGKCAPCRIGLLQLKHILTDVLNGKSTMKTLDLIEETAKSIRETADCALGYEAADMVY 109
Query: 226 GLIRHFRPELERRMQ 182
I + R + E ++
Sbjct: 110 KSIIYCRDDFEEHIK 124
>UniRef50_Q1K3H5 Cluster: FAD-dependent pyridine
nucleotide-disulphide oxidoreductase; n=1;
Desulfuromonas acetoxidans DSM 684|Rep: FAD-dependent
pyridine nucleotide-disulphide oxidoreductase -
Desulfuromonas acetoxidans DSM 684
Length = 651
Score = 49.2 bits (112), Expect = 1e-04
Identities = 27/107 (25%), Positives = 56/107 (52%), Gaps = 1/107 (0%)
Frame = -2
Query: 517 DGLVAAQTSLGTAAIIVMDKSTNIVKAIARLIMFYKHESC-GQCTPCREGVSWMNKIIYR 341
DG V A +G ++++D T++V A + + + C G+CTP ++G M + R
Sbjct: 37 DGKVGA--FMGWDGVVLLDGETDVVAMAAEYMKRVQEKHCCGKCTPGKKGTRVMQDTLAR 94
Query: 340 FVDGNASPKEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPE 200
+ G+ ++++++ + +EG C L +A PV +++FR +
Sbjct: 95 ILQGHGEERDLEIIENLKSLLEG-CKCTLCMTSAIPVLDTVKYFRDD 140
>UniRef50_Q67JR5 Cluster: NADH dehydrogenase subunit; n=1;
Symbiobacterium thermophilum|Rep: NADH dehydrogenase
subunit - Symbiobacterium thermophilum
Length = 394
Score = 48.4 bits (110), Expect = 2e-04
Identities = 27/79 (34%), Positives = 44/79 (55%), Gaps = 2/79 (2%)
Frame = -2
Query: 601 DNLLAIIPGG-SSTPLIPKNVCETVLMDFDGLVAAQTSLGTAAIIVMDKSTNIVKAIARL 425
+ +LA++PGG S PL P + V + ++ L A +SLG +A++V ++ + + R
Sbjct: 265 EEILAVLPGGLGSGPLRPDEL--DVPLTYEDLAALGSSLGNSAVVVFRRADATLPDLVRE 322
Query: 424 -IMFYKHESCGQCTPCREG 371
+ SCGQC CREG
Sbjct: 323 NVALLARGSCGQCRGCREG 341
>UniRef50_Q9ACZ1 Cluster: Putative oxidoreductase; n=3;
Streptomyces|Rep: Putative oxidoreductase - Streptomyces
coelicolor
Length = 525
Score = 46.4 bits (105), Expect = 8e-04
Identities = 28/130 (21%), Positives = 61/130 (46%)
Frame = -2
Query: 586 IIPGGSSTPLIPKNVCETVLMDFDGLVAAQTSLGTAAIIVMDKSTNIVKAIARLIMFYKH 407
++ GG I ++ + L A +LG AI+ + + T + ++ +
Sbjct: 266 VLTGGYHGKWIDAATVNEAIVSRNSLDAVGGALGAGAILPISQETCPLGEALQVAKWLAE 325
Query: 406 ESCGQCTPCREGVSWMNKIIYRFVDGNASPKEIDMLWEISKQIEGHTICALGDGAAWPVQ 227
ES GQC PC G+ + + ++G P ++ L ++++ ++ C+ DG+A ++
Sbjct: 326 ESAGQCGPCYLGLPAAARGLEDILNG-GGPAALETLKQVARNVKRRGACSHPDGSAMFLE 384
Query: 226 GLIRHFRPEL 197
+I+ F +L
Sbjct: 385 SMIKVFTDDL 394
>UniRef50_Q65UM2 Cluster: GltD protein; n=2; Pasteurellaceae|Rep:
GltD protein - Mannheimia succiniciproducens (strain
MBEL55E)
Length = 612
Score = 44.8 bits (101), Expect = 0.002
Identities = 19/78 (24%), Positives = 39/78 (50%)
Frame = -2
Query: 406 ESCGQCTPCREGVSWMNKIIYRFVDGNASPKEIDMLWEISKQIEGHTICALGDGAAWPVQ 227
++CG+C PCR+G+ ++ ++ + G + + E+++ I + CA+G A +
Sbjct: 50 QTCGKCVPCRDGIPHLSFLLRDILAGEGDDSTMRQIRELAEMIRDGSDCAIGYQPAIEIL 109
Query: 226 GLIRHFRPELERRMQEYS 173
I F+ E E + S
Sbjct: 110 DSIEEFKEEYESHIHNKS 127
>UniRef50_Q4AEJ7 Cluster: Hydrogen dehydrogenase; n=1; Chlorobium
phaeobacteroides BS1|Rep: Hydrogen dehydrogenase -
Chlorobium phaeobacteroides BS1
Length = 497
Score = 44.8 bits (101), Expect = 0.002
Identities = 26/91 (28%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Frame = -2
Query: 478 AIIVMDKSTNIVKAIARLIM-FYKHESCGQCTPCREGVSWMNKIIYRFVDGNASPKEIDM 302
++IV + + N++ + M F+ ESCG C+ CR + + + + ++G ++I
Sbjct: 408 SMIVFNNTRNLLTDVVLNFMNFFIEESCGSCSTCRNMPFVLREKLLKIIEGRGVKQDIKD 467
Query: 301 LWEISKQIEGHTICALGDGAAWPVQGLIRHF 209
+ E +K + + C LG AA PV IR+F
Sbjct: 468 MIEWAK-VLNVSRCGLGQTAANPVVSSIRNF 497
>UniRef50_A6QCF8 Cluster: FAD-dependent pyridine
nucleotide-disulphide oxidoreductase; n=3;
Epsilonproteobacteria|Rep: FAD-dependent pyridine
nucleotide-disulphide oxidoreductase - Sulfurovum sp.
(strain NBC37-1)
Length = 669
Score = 44.8 bits (101), Expect = 0.002
Identities = 24/111 (21%), Positives = 54/111 (48%), Gaps = 2/111 (1%)
Frame = -2
Query: 520 FDGLVAAQTSLGTAAIIVMDKSTNIVKAIARLIMFYKH--ESCGQCTPCREGVSWMNKII 347
+ G ++ +G + + D++ + V+ ++ Y+ E+CG+C P R G + ++
Sbjct: 35 YHGEKNSKAFIGWDGVAIFDENIDAVELASKYAAQYQEYSEACGRCAPGRWGGRILYDLL 94
Query: 346 YRFVDGNASPKEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELE 194
+ G S +I L EISK + + C +G P+ L+ +++ + +
Sbjct: 95 DKIARGEGSHDDIAHLKEISKTMMATSKCEIGKTVPKPILDLMEYYKDQFD 145
>UniRef50_Q5V638 Cluster: Putative NADH dehydrogenase I, F subunit;
n=1; Haloarcula marismortui|Rep: Putative NADH
dehydrogenase I, F subunit - Haloarcula marismortui
(Halobacterium marismortui)
Length = 507
Score = 44.8 bits (101), Expect = 0.002
Identities = 28/98 (28%), Positives = 46/98 (46%), Gaps = 1/98 (1%)
Frame = -2
Query: 490 LGTAAII-VMDKSTNIVKAIARLIMFYKHESCGQCTPCREGVSWMNKIIYRFVDGNASPK 314
LGT ++ + D V+ + + F E+ G+C P REG + +++ DG+
Sbjct: 395 LGTNGVVELFDTGRCTVETVGKRARFASMENSGRCVPGREGTKQLAELLRDIYDGSF--- 451
Query: 313 EIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPE 200
E D + E+S+ + + C G A PV I F PE
Sbjct: 452 ENDKIRELSRVMRQSSNCQTGAHAPRPVTTAIDEFEPE 489
>UniRef50_Q1PZQ6 Cluster: Similar to NADH dehydrogenase I chain F
(1st module) EC: 1.6.5.3; n=1; Candidatus Kuenenia
stuttgartiensis|Rep: Similar to NADH dehydrogenase I
chain F (1st module) EC: 1.6.5.3 - Candidatus Kuenenia
stuttgartiensis
Length = 675
Score = 43.6 bits (98), Expect = 0.006
Identities = 29/113 (25%), Positives = 48/113 (42%), Gaps = 3/113 (2%)
Frame = -2
Query: 523 DFDGLVAAQTSLGTAAIIVMDKSTNIVKAIARLIMFYKHESCGQCTPCREGVSWMNKIIY 344
+FD + LG+A IV+D + +I + + F ESC QC C+ G+ + I
Sbjct: 518 EFDAFQMIGSGLGSAGFIVLDNAASIPRVTQAVARFLYVESCNQCPACKAGLRTASHGID 577
Query: 343 RFVDG---NASPKEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELE 194
+ + +D + E + C L A + GL++ FR E E
Sbjct: 578 ELLQHLHLHDDRAGLDWIMEGAHSAPQANRCFLPAQGAKLIPGLVQSFREEFE 630
>UniRef50_Q74FU5 Cluster: Fe(III) reductase, beta subunit; n=6;
Geobacter|Rep: Fe(III) reductase, beta subunit -
Geobacter sulfurreducens
Length = 672
Score = 42.3 bits (95), Expect = 0.013
Identities = 23/107 (21%), Positives = 51/107 (47%), Gaps = 1/107 (0%)
Frame = -2
Query: 517 DGLVAAQTSLGTAAIIVMDKSTNIVKAIARLIMFYKHE-SCGQCTPCREGVSWMNKIIYR 341
DG +G II+ D ++ A + + + CG+CTP ++G + ++
Sbjct: 34 DGERQIAAFMGWDGIILYDLKVDVPAMAAEYMKRVQTQYCCGKCTPGKKGTKVLADVLAA 93
Query: 340 FVDGNASPKEIDMLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPE 200
++G A+ ++D + +++ + + C L + PV ++HFR +
Sbjct: 94 IIEGRATEADLDTIDDLADLLT-NCKCTLCQSSTIPVLDAVKHFRED 139
>UniRef50_O96948 Cluster: Hydrogenase; n=14; Eukaryota|Rep:
Hydrogenase - Nyctotherus ovalis
Length = 1206
Score = 39.9 bits (89), Expect = 0.071
Identities = 28/116 (24%), Positives = 51/116 (43%)
Frame = -2
Query: 598 NLLAIIPGGSSTPLIPKNVCETVLMDFDGLVAAQTSLGTAAIIVMDKSTNIVKAIARLIM 419
+++A GG + P+I + +T+ G + A ++++ + S ++ K +
Sbjct: 1067 DIVAAEIGGCTEPIIFGSKFDTLFGFGRGTLNA-----VGSVVLFNSSCDLGKIYENKLK 1121
Query: 418 FYKHESCGQCTPCREGVSWMNKIIYRFVDGNASPKEIDMLWEISKQIEGHTICALG 251
F ESC QC PCR+G ++ D S + L S+ +ICA G
Sbjct: 1122 FMAEESCKQCVPCRDGSYIFHRAFKELRDTGKSSYNMRALAVASESAARSSICAHG 1177
>UniRef50_UPI00006DD0D0 Cluster: hypothetical protein
Bmal2_03001021; n=1; Burkholderia mallei 2002721280|Rep:
hypothetical protein Bmal2_03001021 - Burkholderia
mallei 2002721280
Length = 340
Score = 36.7 bits (81), Expect = 0.66
Identities = 22/68 (32%), Positives = 31/68 (45%)
Frame = -3
Query: 312 KSTCCGKFRNKSKGTRSALWATEPRGRCRDSYVTSGPSSSDACRSTRPRTGRAKPSACTS 133
+ TCC + R S + RC S G S S +CRS R + ++ S+CTS
Sbjct: 271 RRTCCRRTRMSSPCCSRRSRSASASARCCASGCRGGASRSGSCRSARSASACSR-SSCTS 329
Query: 132 SAIRAERQ 109
A R R+
Sbjct: 330 RATRCPRR 337
>UniRef50_UPI00015B97F2 Cluster: UPI00015B97F2 related cluster; n=1;
unknown|Rep: UPI00015B97F2 UniRef100 entry - unknown
Length = 1058
Score = 35.9 bits (79), Expect = 1.2
Identities = 27/74 (36%), Positives = 33/74 (44%), Gaps = 3/74 (4%)
Frame = -1
Query: 647 QGAH*EARGRSHRRXGQP--ARHHTRRLLDPAHTQERLRDSVD-GLRRSSSRADLPGHGG 477
QGA R R+ R+ QP AR R LDPA + RLR D G + A P H
Sbjct: 331 QGAGRGGRHRAGRKLRQPGPARRARGRDLDPARARHRLRRHADHGRHAPAHLAGRPHHRA 390
Query: 476 HHCHGQVN*HREGD 435
G+ + HR D
Sbjct: 391 RPARGRRDDHRRDD 404
>UniRef50_UPI0000DB7593 Cluster: PREDICTED: similar to NFAT
CG11172-PA; n=1; Apis mellifera|Rep: PREDICTED: similar
to NFAT CG11172-PA - Apis mellifera
Length = 1265
Score = 35.1 bits (77), Expect = 2.0
Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
Frame = -3
Query: 303 CCGKFRNKSKGTRSALWATEPRGRCRDSYVTS---GPSSSDACRSTRPRTGRAKPSACTS 133
CC + + G AT R CR TS G + + A RSTR + P++C +
Sbjct: 1001 CCSDAASATSGAGCCACATTSRASCRSGSATSGTGGTTGAAASRSTRGAACASCPTSCAT 1060
Query: 132 SA 127
SA
Sbjct: 1061 SA 1062
>UniRef50_A0UJN9 Cluster: Putative uncharacterized protein
precursor; n=1; Burkholderia multivorans ATCC 17616|Rep:
Putative uncharacterized protein precursor -
Burkholderia multivorans ATCC 17616
Length = 1690
Score = 35.1 bits (77), Expect = 2.0
Identities = 29/80 (36%), Positives = 36/80 (45%), Gaps = 4/80 (5%)
Frame = -1
Query: 632 EARGRSHRRXGQPARHHTRRLLDPAHTQERLRDSVDGLRRSSSRADLPG----HGGHHCH 465
+ RGR H AR R L P H D+ G RR ++RAD G H HH H
Sbjct: 376 DPRGRRH--DVHRARRAVRELHPPDHDPV---DAAVGRRRRAARADDHGPRSRHHRHHRH 430
Query: 464 GQVN*HREGDRSTHHVLQAR 405
+ HRE +R L+AR
Sbjct: 431 RAADRHREEERDHDDRLRAR 450
>UniRef50_A1SQ39 Cluster: Respiratory-chain NADH dehydrogenase
domain, 51 kDa subunit; n=1; Nocardioides sp. JS614|Rep:
Respiratory-chain NADH dehydrogenase domain, 51 kDa
subunit - Nocardioides sp. (strain BAA-499 / JS614)
Length = 412
Score = 34.3 bits (75), Expect = 3.5
Identities = 33/143 (23%), Positives = 56/143 (39%), Gaps = 7/143 (4%)
Frame = -2
Query: 589 AIIPGGSSTPLIPKNVCETVLMDFDGLVAAQTSLGTAAIIV-------MDKSTNIVKAIA 431
A++PG P++ + D DGL AA+ L A + + + + + +
Sbjct: 249 ALLPGAGG-PVLVGGYHGRWVRDVDGLAAARPGLRAAGLPLNAGVVARLPREVCALAEVT 307
Query: 430 RLIMFYKHESCGQCTPCREGVSWMNKIIYRFVDGNASPKEIDMLWEISKQIEGHTICALG 251
+ + +S GQC PC G + + + + G A+P L + + G CA
Sbjct: 308 AVTRWLAAQSAGQCGPCLYGTAALAHDVGELLHGRAAPAVEARL----RGLVGRGACAHP 363
Query: 250 DGAAWPVQGLIRHFRPELERRMQ 182
DG V + ELE Q
Sbjct: 364 DGTTAFVSTALATLGDELELHRQ 386
>UniRef50_A6DNW3 Cluster: Putative uncharacterized protein; n=1;
Lentisphaera araneosa HTCC2155|Rep: Putative
uncharacterized protein - Lentisphaera araneosa HTCC2155
Length = 953
Score = 33.9 bits (74), Expect = 4.7
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Frame = -1
Query: 563 PAHTQERLRDSVDGLRRSSSRADLP-GHGGHHCHGQVN*HREGDRSTHHVLQARVLRPVH 387
P + L S DG + AD HGG+H H ++ + +G ++ H +QA V+ P H
Sbjct: 456 PLPALKGLSISKDGKAITYKNADASHSHGGYHPHFLIHKNPQGWKADHKKMQALVMTPHH 515
Query: 386 SL 381
++
Sbjct: 516 NM 517
>UniRef50_A1SFH1 Cluster: Pentapeptide repeat protein; n=1;
Nocardioides sp. JS614|Rep: Pentapeptide repeat protein
- Nocardioides sp. (strain BAA-499 / JS614)
Length = 885
Score = 33.9 bits (74), Expect = 4.7
Identities = 18/60 (30%), Positives = 28/60 (46%)
Frame = +1
Query: 154 CSARARPSTPACVARARAGSDV*VPAPATRLRRPERRSCALRFVSKFPTACRFLSVKHYH 333
C+ + RP+ P R + AP RL P + ALR + + P++ R S H+H
Sbjct: 603 CAIKGRPTWPEKAVLDRLADEAVAKAPEFRLAAPSELTDALRAL-QAPSSTRITSTTHFH 661
>UniRef50_UPI0000D9B68E Cluster: PREDICTED: hypothetical protein;
n=1; Macaca mulatta|Rep: PREDICTED: hypothetical protein
- Macaca mulatta
Length = 216
Score = 33.5 bits (73), Expect = 6.2
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = -3
Query: 672 GGGDEHPAXRSSLRGTRAESPAXGTTCSPSYQEAPRPRSYPRTSA 538
G + P+ R +LRG + SP TC P Q R Y + SA
Sbjct: 47 GAKESLPSSRETLRGASSRSPPPQRTCQPITQRHTELRDYAKRSA 91
>UniRef50_Q74EB7 Cluster: Putative uncharacterized protein; n=5;
Geobacter|Rep: Putative uncharacterized protein -
Geobacter sulfurreducens
Length = 294
Score = 33.5 bits (73), Expect = 6.2
Identities = 25/70 (35%), Positives = 30/70 (42%)
Frame = -1
Query: 566 DPAHTQERLRDSVDGLRRSSSRADLPGHGGHHCHGQVN*HREGDRSTHHVLQARVLRPVH 387
D A T E RD D L S ADLPG+ H ++N + H + RV P H
Sbjct: 106 DAAITVEEDRDGFDYLYLRSDLADLPGNRFHKKKNRINYF-----AARHPFEVRVFGPDH 160
Query: 386 SLPRRCLLDE 357
LLDE
Sbjct: 161 RQGCLALLDE 170
>UniRef50_Q62CS2 Cluster: Conserved domain protein; n=1;
Burkholderia mallei|Rep: Conserved domain protein -
Burkholderia mallei (Pseudomonas mallei)
Length = 132
Score = 33.5 bits (73), Expect = 6.2
Identities = 28/79 (35%), Positives = 35/79 (44%), Gaps = 3/79 (3%)
Frame = +1
Query: 73 VQWFLRYSQSEELTFGAYCTTSTGARLC-SARAR-PSTPACVARARAGSDV*VPAP-ATR 243
V W R S+S+ + C + R A AR A +RA+ G VPAP A
Sbjct: 15 VSWRARSSRSDSCGDLSRCERAPDGRAAPGASARLGDAGAGGSRAKPGRRASVPAPNAAG 74
Query: 244 LRRPERRSCALRFVSKFPT 300
RRP R SC R + PT
Sbjct: 75 ARRPRRASCRCRDARRPPT 93
>UniRef50_A6VZW2 Cluster: Pyridoxal-5'-phosphate-dependent protein
beta subunit; n=5; Proteobacteria|Rep:
Pyridoxal-5'-phosphate-dependent protein beta subunit -
Marinomonas sp. MWYL1
Length = 320
Score = 33.5 bits (73), Expect = 6.2
Identities = 16/52 (30%), Positives = 29/52 (55%)
Frame = -2
Query: 601 DNLLAIIPGGSSTPLIPKNVCETVLMDFDGLVAAQTSLGTAAIIVMDKSTNI 446
D L +PG + P+I K V E +L+D + ++A SL A ++ + + +I
Sbjct: 232 DGLRISVPGQNPYPIIEKYVDEIILVDDEHIIAGMRSLAKDAKLIAEPAASI 283
>UniRef50_A7ATC7 Cluster: Variant erythrocyte surface antigen-1,
alpha subunit; n=27; Babesia bovis|Rep: Variant
erythrocyte surface antigen-1, alpha subunit - Babesia
bovis
Length = 1378
Score = 33.5 bits (73), Expect = 6.2
Identities = 17/48 (35%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Frame = -3
Query: 321 HRKKSTCCGKFRNKSKGTRSALWAT-EPRGRCRDSYVTSGPSSSDACR 181
H K CCG N + G R G+CR+ V G S D+CR
Sbjct: 157 HGKFKCCCGNNGNHNGGLRCCKGQNGADGGKCRNGKVCDGSSKGDSCR 204
>UniRef50_UPI0000F2C98A Cluster: PREDICTED: similar to CG9434-PA;
n=1; Monodelphis domestica|Rep: PREDICTED: similar to
CG9434-PA - Monodelphis domestica
Length = 412
Score = 33.1 bits (72), Expect = 8.2
Identities = 22/49 (44%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Frame = -3
Query: 675 RGGGDEHP--AXRSSLRGTRAESPAXGTTCSPSYQEAPRPRSYPRTSAR 535
RG G P A RSS RG SP SP E PRPR R S R
Sbjct: 144 RGAGWPRPRGAGRSSPRGANWPSPGEAERPSPGGAEWPRPRGTNRPSPR 192
>UniRef50_UPI0000E816CC Cluster: PREDICTED: hypothetical protein;
n=1; Gallus gallus|Rep: PREDICTED: hypothetical protein
- Gallus gallus
Length = 184
Score = 33.1 bits (72), Expect = 8.2
Identities = 21/59 (35%), Positives = 22/59 (37%)
Frame = -3
Query: 300 CGKFRNKSKGTRSALWATEPRGRCRDSYVTSGPSSSDACRSTRPRTGRAKPSACTSSAI 124
CG G R A T P G C VTS P RS R PSA S A+
Sbjct: 32 CGHMAASGPGGRGAARTTLPMGHCGRWAVTSPPIGQRRPRSARGLVAAFGPSASLSGAV 90
>UniRef50_Q0RX70 Cluster: Possible transposase, N-terminal; n=1;
Rhodococcus sp. RHA1|Rep: Possible transposase,
N-terminal - Rhodococcus sp. (strain RHA1)
Length = 335
Score = 33.1 bits (72), Expect = 8.2
Identities = 19/54 (35%), Positives = 25/54 (46%)
Frame = -3
Query: 288 RNKSKGTRSALWATEPRGRCRDSYVTSGPSSSDACRSTRPRTGRAKPSACTSSA 127
R +S G+R W T P C T PS +D STR R + P C +S+
Sbjct: 227 RARSTGSR---WRTTPCCGCCTIPATPAPSPTDGTASTRCRAAKPSPRNCPASS 277
>UniRef50_Q64LI3 Cluster: NADH dehydrogenase subunit 2; n=1;
Paratomella rubra|Rep: NADH dehydrogenase subunit 2 -
Paratomella rubra
Length = 324
Score = 33.1 bits (72), Expect = 8.2
Identities = 17/46 (36%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Frame = +2
Query: 2 FFFFFYS*IAVYYYTKMISLHLSLYNG-SFDTLKVKS*RSARIALL 136
FFF F S +++++Y ++ S LS YN SF +LKV S ++++
Sbjct: 264 FFFIFVSSLSIFFYLRVFS--LSFYNSTSFSSLKVLSILGGEVSMV 307
>UniRef50_A6NJI7 Cluster: Uncharacterized protein ENSP00000341171;
n=34; Euteleostomi|Rep: Uncharacterized protein
ENSP00000341171 - Homo sapiens (Human)
Length = 751
Score = 33.1 bits (72), Expect = 8.2
Identities = 18/33 (54%), Positives = 19/33 (57%)
Frame = -3
Query: 636 LRGTRAESPAXGTTCSPSYQEAPRPRSYPRTSA 538
LR T PA G T PS +EAPRPR P T A
Sbjct: 402 LRDTEP-GPASGGTLGPSGEEAPRPRMSPATIA 433
>UniRef50_Q0USM0 Cluster: Putative uncharacterized protein; n=1;
Phaeosphaeria nodorum|Rep: Putative uncharacterized
protein - Phaeosphaeria nodorum (Septoria nodorum)
Length = 761
Score = 33.1 bits (72), Expect = 8.2
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = -2
Query: 598 NLLAIIPGGSSTPLIPKNVCETVLMDFDGLVAAQT 494
+LL + PGG +PLI K + L+ D +AA T
Sbjct: 574 HLLGVYPGGHISPLINKTASDAALVSLDNRIAAST 608
>UniRef50_P28739 Cluster: Kinesin-like protein klpA; n=8;
Eurotiomycetidae|Rep: Kinesin-like protein klpA -
Emericella nidulans (Aspergillus nidulans)
Length = 763
Score = 33.1 bits (72), Expect = 8.2
Identities = 25/71 (35%), Positives = 30/71 (42%)
Frame = -3
Query: 315 KKSTCCGKFRNKSKGTRSALWATEPRGRCRDSYVTSGPSSSDACRSTRPRTGRAKPSACT 136
K T + N S TRSA A+ PRG S TSG + S RP G A P T
Sbjct: 67 KAHTRANSYANSSTLTRSASAASRPRGPLSSS--TSGRPKTSMSTSRRP-NGHALPRPAT 123
Query: 135 SSAIRAERQLF 103
S E + +
Sbjct: 124 SLDTHQEERSY 134
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 793,766,008
Number of Sequences: 1657284
Number of extensions: 17316268
Number of successful extensions: 65446
Number of sequences better than 10.0: 98
Number of HSP's better than 10.0 without gapping: 60026
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65250
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 67085240885
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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