Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_T7_O01
(788 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC18E5.10 |||iron sulfur cluster assembly protein |Schizosacch... 110 3e-25
SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces p... 28 1.3
SPAC19B12.11c |||zinc finger protein|Schizosaccharomyces pombe|c... 27 2.3
SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase Vas1|Schizos... 27 4.0
SPAC9E9.10c |cbh1|cbh|centromere binding protein |Schizosaccharo... 26 7.1
SPAC694.06c |mrc1||mediator of replication checkpoint 1 |Schizos... 26 7.1
SPBC660.05 |||conserved fungal protein|Schizosaccharomyces pombe... 25 9.4
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 25 9.4
>SPBC18E5.10 |||iron sulfur cluster assembly protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 452
Score = 110 bits (264), Expect = 3e-25
Identities = 53/154 (34%), Positives = 83/154 (53%), Gaps = 1/154 (0%)
Frame = -2
Query: 646 KELIERHAGGVTGGWDNLLAIIPGGSSTPLIPKNVCETVLMDFDGLVAAQTSLGTAAIIV 467
K+LIE +AGGV GGW+ L+ I PGG + ++ KN CE V MDFD L A +SLGT ++IV
Sbjct: 295 KDLIENYAGGVRGGWNKLVGIFPGGPCSGILNKNQCEQVTMDFDSLKALDSSLGTGSVIV 354
Query: 466 MDKSTNIVKAIARLIMFYKHESCGQCTPCREGVSWMNKIIYRFVDGNASPKEI-DMLWEI 290
++ I +++ FY +C C CR+GV + + + DG+A ++ DM +
Sbjct: 355 LNDHDQIFESLLNFAKFYSTNTCHTCPVCRDGVEDVIETLKGLKDGHAHLSQLKDMFSKF 414
Query: 289 SKQIEGHTICALGDGAAWPVQGLIRHFRPELERR 188
+ C GD + + R+F ++ R
Sbjct: 415 NMPSSSKVFCGFGDSMRHQIHSIQRNFPDQITFR 448
Score = 47.6 bits (108), Expect = 2e-06
Identities = 24/46 (52%), Positives = 27/46 (58%)
Frame = -1
Query: 782 PRSVGVAXK*FASFGRQRNXGTKLFKISGHVNTPCTVEEEMSIPLQ 645
P + K F S GR N GTKLF ISG VN P +E MSIPL+
Sbjct: 250 PAIIKKGPKFFISMGRPNNRGTKLFSISGEVNEPNVIEACMSIPLK 295
>SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 926
Score = 28.3 bits (60), Expect = 1.3
Identities = 17/46 (36%), Positives = 21/46 (45%)
Frame = -3
Query: 687 HAVHRGGGDEHPAXRSSLRGTRAESPAXGTTCSPSYQEAPRPRSYP 550
H H+ ++PA L T A SPA + PSY A P S P
Sbjct: 85 HTSHKSRR-QYPAEVFELTNTLAASPAPPSLSEPSYVMARTPSSSP 129
>SPAC19B12.11c |||zinc finger protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 124
Score = 27.5 bits (58), Expect = 2.3
Identities = 21/57 (36%), Positives = 23/57 (40%), Gaps = 3/57 (5%)
Frame = -1
Query: 629 ARGRSHRRXGQPARHHTR---RLLDPAHTQERLRDSVDGLRRSSSRADLPGHGGHHC 468
AR R H G A TR R LD H + D L DLPG G H+C
Sbjct: 5 ARKRKHHSNGNHALFRTRVYGRDLDQIHNDLTESEKFDKLPIDP---DLPGLGQHYC 58
>SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase
Vas1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 950
Score = 26.6 bits (56), Expect = 4.0
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = -2
Query: 361 MNKIIYRFVDGNASPKEIDMLWEISKQIEG 272
+NK + ++VD +P E L+EIS Q+EG
Sbjct: 217 INKPVTKYVDN--TPVEFGWLYEISYQLEG 244
>SPAC9E9.10c |cbh1|cbh|centromere binding protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 514
Score = 25.8 bits (54), Expect = 7.1
Identities = 8/26 (30%), Positives = 17/26 (65%)
Frame = +2
Query: 239 RGSVAQSADRVPFDLFRNFPQHVDFF 316
+ +V Q+ + + F++FR +P H+ F
Sbjct: 142 QSAVNQALESIKFEVFREYPVHIQEF 167
>SPAC694.06c |mrc1||mediator of replication checkpoint 1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1019
Score = 25.8 bits (54), Expect = 7.1
Identities = 14/52 (26%), Positives = 26/52 (50%)
Frame = -2
Query: 256 LGDGAAWPVQGLIRHFRPELERRMQEYSAAHGPSKAERLY**CNTRRTSTLH 101
LGD + Q L ++E + E ++ GP+ +R+Y +++ST H
Sbjct: 867 LGDEYLYSEQSLNHEEEEQMEEELSEIFSSGGPNVVDRVY----LKKSSTRH 914
>SPBC660.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 143
Score = 25.4 bits (53), Expect = 9.4
Identities = 17/60 (28%), Positives = 21/60 (35%)
Frame = -3
Query: 243 PRGRCRDSYVTSGPSSSDACRSTRPRTGRAKPSACTSSAIRAERQLFTLRVSKEPLYRER 64
P G Y P SSD RS G A S +R R + + PL+ R
Sbjct: 51 PPGTTTVVYQKDVPRSSDGSRSMTAGLGGFMVGALAGSVLRGHRAYYAPPPPRGPLFGPR 110
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 25.4 bits (53), Expect = 9.4
Identities = 13/51 (25%), Positives = 23/51 (45%)
Frame = -2
Query: 370 VSWMNKIIYRFVDGNASPKEIDMLWEISKQIEGHTICALGDGAAWPVQGLI 218
VSW NK+ + GNA+ E +W++ + + + LG G +
Sbjct: 168 VSWNNKVSHILASGNAT--EYTTVWDVKLKRQVLNLSYLGAAGVSAATGAV 216
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,099,273
Number of Sequences: 5004
Number of extensions: 62953
Number of successful extensions: 196
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -