Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_T7_O01
(788 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_40801| Best HMM Match : Complex1_51K (HMM E-Value=0) 126 3e-29
SB_8335| Best HMM Match : Dehydrin (HMM E-Value=7.2) 31 0.80
SB_52977| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.5
SB_7913| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2
SB_20574| Best HMM Match : Extensin_2 (HMM E-Value=0.25) 29 3.2
SB_12027| Best HMM Match : Extensin_2 (HMM E-Value=0.2) 29 3.2
SB_30221| Best HMM Match : zf-C2HC (HMM E-Value=6.3) 29 4.3
SB_58675| Best HMM Match : RVT_1 (HMM E-Value=0) 28 7.5
SB_48986| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.5
SB_42467| Best HMM Match : Borrelia_orfA (HMM E-Value=1.7) 28 7.5
SB_36217| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.9
SB_7144| Best HMM Match : DUF834 (HMM E-Value=2.8) 28 9.9
SB_49130| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.9
>SB_40801| Best HMM Match : Complex1_51K (HMM E-Value=0)
Length = 369
Score = 126 bits (303), Expect = 3e-29
Identities = 56/77 (72%), Positives = 64/77 (83%)
Frame = -2
Query: 622 GGVTGGWDNLLAIIPGGSSTPLIPKNVCETVLMDFDGLVAAQTSLGTAAIIVMDKSTNIV 443
GG GGWDNLL +IPGGSSTPLIP +VC+ VLMDFD LV AQT LGTAA+IV +K +++
Sbjct: 148 GGGNGGWDNLLGVIPGGSSTPLIPLSVCDDVLMDFDALVQAQTGLGTAALIVFNKQADVI 207
Query: 442 KAIARLIMFYKHESCGQ 392
K IARLI FYKHESCGQ
Sbjct: 208 KGIARLIEFYKHESCGQ 224
Score = 37.9 bits (84), Expect = 0.009
Identities = 14/23 (60%), Positives = 20/23 (86%)
Frame = -2
Query: 229 QGLIRHFRPELERRMQEYSAAHG 161
QGLIRH+RPE+E+RM+E++ G
Sbjct: 224 QGLIRHYRPEIEQRMKEFAEKQG 246
>SB_8335| Best HMM Match : Dehydrin (HMM E-Value=7.2)
Length = 531
Score = 31.5 bits (68), Expect = 0.80
Identities = 22/58 (37%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Frame = -3
Query: 696 SREHAVHRGGGD-EHPAXRSSLRGTRAESPAXGTTCSPSYQEAPRPR-SYPRTSARQC 529
SRE+ V R + +HP R +RG R E P +E RPR S PR A +C
Sbjct: 334 SRENQVRRDNDERDHPQDR--IRGRREEKPIDPNRGPDKDREPQRPRESRPRERADRC 389
>SB_52977| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 929
Score = 29.9 bits (64), Expect = 2.5
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = -2
Query: 259 ALGDGAAWPVQGLIRHFRPELERRMQEYSAAHGPSK 152
++G WPV G +R+ P ER+ QE H +K
Sbjct: 839 SVGRRPYWPVDGRLRNLPPLKERKRQEEKETHWTTK 874
>SB_7913| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 336
Score = 29.5 bits (63), Expect = 3.2
Identities = 17/49 (34%), Positives = 18/49 (36%)
Frame = -1
Query: 620 RSHRRXGQPARHHTRRLLDPAHTQERLRDSVDGLRRSSSRADLPGHGGH 474
R RR P R R P H R R RR SR+ P H H
Sbjct: 232 RRRRRSRSPRRRRRSRSPSPHHRSHRSRSRSRSPRRRHSRSRSPTHRRH 280
Score = 28.7 bits (61), Expect = 5.7
Identities = 16/46 (34%), Positives = 19/46 (41%)
Frame = -1
Query: 611 RRXGQPARHHTRRLLDPAHTQERLRDSVDGLRRSSSRADLPGHGGH 474
RR PA H R + + R R S RR SR+ P H H
Sbjct: 211 RRSHSPAHHRRSRSRSRSRSPRRRRRSRSPRRRRRSRSPSPHHRSH 256
>SB_20574| Best HMM Match : Extensin_2 (HMM E-Value=0.25)
Length = 1508
Score = 29.5 bits (63), Expect = 3.2
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = -3
Query: 225 DSYVTSGPSSSDACRSTRPRTGRAKPSACTSSAIRAE 115
D+Y T GP+ DA R+ P G + T A R E
Sbjct: 1228 DAYRTEGPTHGDAYRTEGPTRGAYRTEGPTHGAYRTE 1264
>SB_12027| Best HMM Match : Extensin_2 (HMM E-Value=0.2)
Length = 1706
Score = 29.5 bits (63), Expect = 3.2
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = -3
Query: 225 DSYVTSGPSSSDACRSTRPRTGRAKPSACTSSAIRAE 115
D+Y T GP+ DA R+ P G + T A R E
Sbjct: 625 DAYRTEGPTHGDAYRTEGPTRGAYRTEGPTHGAYRTE 661
>SB_30221| Best HMM Match : zf-C2HC (HMM E-Value=6.3)
Length = 158
Score = 29.1 bits (62), Expect = 4.3
Identities = 31/127 (24%), Positives = 50/127 (39%), Gaps = 5/127 (3%)
Frame = -2
Query: 643 ELIERHAGGVTGGWDNLLAIIPG-----GSSTPLIPKNVCETVLMDFDGLVAAQTSLGTA 479
E I+R A G + +D I+ G S LI N C T +MD DG++++ S
Sbjct: 36 ESIKRQAFGNSACFDFKQLILEGITKDSKSLIKLIAVN-CPTNIMDSDGVISSHLSDHEL 94
Query: 478 AIIVMDKSTNIVKAIARLIMFYKHESCGQCTPCREGVSWMNKIIYRFVDGNASPKEIDML 299
V +A + Y + + EGV W + + + ++D L
Sbjct: 95 VYCVRKLIWKRAQAQTKTFRIYAYYESKKFCEDLEGVDWNSAL----TPNGQAVMDVDYL 150
Query: 298 WEISKQI 278
W SK +
Sbjct: 151 WNGSKAL 157
>SB_58675| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 2353
Score = 28.3 bits (60), Expect = 7.5
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -2
Query: 586 IIPGGSSTPLIPKNVCETVLMDFDG 512
+ PG P+I NV ETV+ DF G
Sbjct: 718 VTPGELECPIIGYNVIETVIKDFPG 742
>SB_48986| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 201
Score = 28.3 bits (60), Expect = 7.5
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = -1
Query: 611 RRXGQPARHHTRRLL-DPAHTQERLRDSVDGLRRSSSRADLPGHG 480
+R P+ H R L DP E + +SV+ L + +R D GHG
Sbjct: 63 KRRPVPSLHACRSTLEDPREDLEYILESVEKLNSTCARLDRYGHG 107
>SB_42467| Best HMM Match : Borrelia_orfA (HMM E-Value=1.7)
Length = 810
Score = 28.3 bits (60), Expect = 7.5
Identities = 14/57 (24%), Positives = 24/57 (42%)
Frame = -1
Query: 590 RHHTRRLLDPAHTQERLRDSVDGLRRSSSRADLPGHGGHHCHGQVN*HREGDRSTHH 420
RH + +D +H++ + D L+ + +D H HH H D + HH
Sbjct: 537 RHSKSKEVDKSHSEVKEEDQHIILKVHLTHSDSSAHKKHHTHIDPEKKHHTDSNKHH 593
>SB_36217| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1356
Score = 27.9 bits (59), Expect = 9.9
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Frame = -3
Query: 258 LWATEPRGRCRDSYVTSGPSSSDAC--RSTRPRTGRA 154
LW TE + R RD++ +G +A RS+R + GR+
Sbjct: 1168 LWITEHQKRLRDAHAAAGERLREAARIRSSRHQRGRS 1204
>SB_7144| Best HMM Match : DUF834 (HMM E-Value=2.8)
Length = 497
Score = 27.9 bits (59), Expect = 9.9
Identities = 21/61 (34%), Positives = 28/61 (45%)
Frame = -1
Query: 659 SIPLQGAH*EARGRSHRRXGQPARHHTRRLLDPAHTQERLRDSVDGLRRSSSRADLPGHG 480
S+PL+G H +R Q RH L E RD + LRRSS++ +L G
Sbjct: 306 SLPLEGEHPASRDGQ-----QVHRHEAHHCLVREIRAETARDDTEILRRSSTK-ELKAFG 359
Query: 479 G 477
G
Sbjct: 360 G 360
>SB_49130| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 665
Score = 27.9 bits (59), Expect = 9.9
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Frame = -3
Query: 258 LWATEPRGRCRDSYVTSGPSSSDAC--RSTRPRTGRA 154
LW TE + R RD++ +G +A RS+R + GR+
Sbjct: 477 LWITEHQKRLRDAHTAAGERLREAARIRSSRHQRGRS 513
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,183,213
Number of Sequences: 59808
Number of extensions: 569945
Number of successful extensions: 1811
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1577
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1806
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2167838629
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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