Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_N24
         (860 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC777.03c |||nifs homolog|Schizosaccharomyces pombe|chr 3|||Ma...    29   1.1  
SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex su...    27   4.5  
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces...    26   7.9  

>SPCC777.03c |||nifs homolog|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 396

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +1

Query: 403 LNKS*VLILCFSNFVHFVSYINHNHLREYL 492
           LNKS +  LC +N++ F+  I   ++ +YL
Sbjct: 277 LNKSLITTLCLNNYLSFLMDIGFENIEQYL 306


>SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex
           subunit Mtr4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1117

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 12/36 (33%), Positives = 23/36 (63%), Gaps = 3/36 (8%)
 Frame = -2

Query: 499 VLVDTPADDYD*YKKQNEQ---NLRSII*EPNFCLT 401
           +L + P ++Y   K Q E+   ++R+++  PNFCL+
Sbjct: 685 ILDERPLEEYHTLKTQLERYRTDVRTVVNHPNFCLS 720


>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 609

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = +2

Query: 620 RRRLXLHWRQRAIERKRTTPASLLQSYEK*MPXYPLNIXHXTPP 751
           ++RL +++ ++  +RK+   A   QSY   +P   L I   T P
Sbjct: 489 KKRLFVNYAEKREDRKKRLSAIFSQSYPPVVPSPSLTIPMATEP 532


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,834,809
Number of Sequences: 5004
Number of extensions: 53602
Number of successful extensions: 107
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)