Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_N24
         (860 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g14280.1 68417.m02201 hypothetical protein                          29   4.0  
At3g08680.2 68416.m01009 leucine-rich repeat transmembrane prote...    29   5.3  
At3g08680.1 68416.m01008 leucine-rich repeat transmembrane prote...    29   5.3  
At5g40100.1 68418.m04864 disease resistance protein (TIR-NBS-LRR...    28   7.0  

>At4g14280.1 68417.m02201 hypothetical protein
          Length = 798

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 21/84 (25%), Positives = 42/84 (50%)
 Frame = +1

Query: 103 SRN*QFLLYFLELLVFHTNIIYTIKHIL*HDLGVNSYSPRSTLHNHTKLLHIGWLFNSLN 282
           SRN   + Y+L++     +I  +   ++  D G N   P+ST + H  L     LF SL 
Sbjct: 187 SRNVSRIFYWLQIASAFASIFISTIQLIKQDYGGNDLKPKST-NLHAALT----LFYSLA 241

Query: 283 HPCPSIFIIS*NYLQKILTLVYML 354
                +F++   Y + +++++++L
Sbjct: 242 LAEALLFLVEKAYWEYMISVIHIL 265


>At3g08680.2 68416.m01009 leucine-rich repeat transmembrane protein
           kinase, putative contains Pfam profile: PF00069
           Eukaryotic protein kinase domain, PF00560 leucine Rich
           Repeat (5 copies)
          Length = 640

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 8/67 (11%)
 Frame = +1

Query: 124 LYFLELLVFH-TNIIYTIKHIL*H-----DLGVNSYSPR--STLHNHTKLLHIGWLFNSL 279
           L F+  L FH  N   TI  +L H     DL  NS S    ++L N T+L  +    NSL
Sbjct: 115 LPFIRSLYFHENNFSGTIPPVLSHRLVNLDLSANSLSGNIPTSLQNLTQLTDLSLQNNSL 174

Query: 280 NHPCPSI 300
           + P P++
Sbjct: 175 SGPIPNL 181


>At3g08680.1 68416.m01008 leucine-rich repeat transmembrane protein
           kinase, putative contains Pfam profile: PF00069
           Eukaryotic protein kinase domain, PF00560 leucine Rich
           Repeat (5 copies)
          Length = 640

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 8/67 (11%)
 Frame = +1

Query: 124 LYFLELLVFH-TNIIYTIKHIL*H-----DLGVNSYSPR--STLHNHTKLLHIGWLFNSL 279
           L F+  L FH  N   TI  +L H     DL  NS S    ++L N T+L  +    NSL
Sbjct: 115 LPFIRSLYFHENNFSGTIPPVLSHRLVNLDLSANSLSGNIPTSLQNLTQLTDLSLQNNSL 174

Query: 280 NHPCPSI 300
           + P P++
Sbjct: 175 SGPIPNL 181


>At5g40100.1 68418.m04864 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1017

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = +3

Query: 246 IIAYWMAF*FSKSSLPFNIYNLMKLFTKNTNI 341
           ++ +W AF  SK  L FN Y L++L  +++N+
Sbjct: 577 LLLHWDAFPLSKFPLRFNTYCLVELNLRHSNL 608


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,200,126
Number of Sequences: 28952
Number of extensions: 254362
Number of successful extensions: 479
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 473
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 479
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2009406400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)