Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_N23
         (885 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       53   3e-09
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    43   3e-06
EF222295-1|ABN79655.1|  146|Tribolium castaneum arginine vasopre...    21   9.7  
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    21   9.7  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    21   9.7  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    21   9.7  

>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 53.2 bits (122), Expect = 3e-09
 Identities = 20/33 (60%), Positives = 25/33 (75%)
 Frame = -1

Query: 342 CSPSPCRNNASCVESAADVTCVCRDGYTGKTYS 244
           CSP+PCRNN SCV+  AD  C C++G+ GKT S
Sbjct: 110 CSPNPCRNNGSCVDRIADFECNCKNGWKGKTCS 142



 Score = 37.9 bits (84), Expect = 1e-04
 Identities = 11/40 (27%), Positives = 22/40 (55%)
 Frame = -1

Query: 375 TQRAARDQVSRCSPSPCRNNASCVESAADVTCVCRDGYTG 256
           T +   + ++ C  +PC N  +CV+      C+C++G+ G
Sbjct: 61  TGKYCHENINDCKVNPCENGGTCVDKINAFQCICKEGWEG 100



 Score = 27.1 bits (57), Expect = 0.20
 Identities = 10/35 (28%), Positives = 15/35 (42%)
 Frame = -1

Query: 348 SRCSPSPCRNNASCVESAADVTCVCRDGYTGKTYS 244
           S C  + C+N  +C +      C C   + G T S
Sbjct: 146 SHCDHTTCKNGGTCQDLGKTFMCRCPPDWEGTTLS 180



 Score = 25.4 bits (53), Expect = 0.60
 Identities = 11/30 (36%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
 Frame = -1

Query: 339 SPSPCRNNASCVE-SAADVTCVCRDGYTGK 253
           +PS C  +  CV        C C+ G+TGK
Sbjct: 34  APSICGEHGHCVNLPGVGHRCQCQPGFTGK 63



 Score = 23.4 bits (48), Expect = 2.4
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -3

Query: 412 CHCAPGWTGQELH 374
           C C PG+TG+  H
Sbjct: 54  CQCQPGFTGKYCH 66



 Score = 23.4 bits (48), Expect = 2.4
 Identities = 8/25 (32%), Positives = 9/25 (36%)
 Frame = -3

Query: 451 NGAAXYTAQSDYYCHCAPGWTGQEL 377
           NG         + C C P W G  L
Sbjct: 155 NGGTCQDLGKTFMCRCPPDWEGTTL 179



 Score = 23.0 bits (47), Expect = 3.2
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = -3

Query: 424 SDYYCHCAPGWTGQ 383
           +D+ C+C  GW G+
Sbjct: 126 ADFECNCKNGWKGK 139


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 43.2 bits (97), Expect = 3e-06
 Identities = 18/47 (38%), Positives = 27/47 (57%)
 Frame = -1

Query: 375 TQRAARDQVSRCSPSPCRNNASCVESAADVTCVCRDGYTGKTYSCDI 235
           T +   + V  CS +PC N A+CV++     C+C  G+TGK   CD+
Sbjct: 92  TGKDCGEYVDWCSTNPCENQATCVQNKNQYQCLCGVGWTGKV--CDV 136



 Score = 41.1 bits (92), Expect = 1e-05
 Identities = 15/36 (41%), Positives = 22/36 (61%)
 Frame = -1

Query: 360 RDQVSRCSPSPCRNNASCVESAADVTCVCRDGYTGK 253
           +++++ C  SPC N A+C +     TC C  GYTGK
Sbjct: 59  QNRINLCDSSPCLNGATCQDHTTHYTCHCPYGYTGK 94



 Score = 37.1 bits (82), Expect = 2e-04
 Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 5/49 (10%)
 Frame = -1

Query: 369 RAARDQVSRCSPSPCRNNASCVESAADVTCVCRDGYTGKT-----YSCD 238
           R    +V+ C+ SPC+N   C    A   C C +G+ GK      Y CD
Sbjct: 333 RHCESKVNFCATSPCQNGGVCTTIHAGHKCTCPEGFYGKNCEFSGYDCD 381



 Score = 35.5 bits (78), Expect = 6e-04
 Identities = 13/39 (33%), Positives = 17/39 (43%)
 Frame = -1

Query: 351 VSRCSPSPCRNNASCVESAADVTCVCRDGYTGKTYSCDI 235
           V  C P  C NN +C++      C C  G+ G     DI
Sbjct: 261 VDDCRPGACHNNGTCLDKVGGFECKCPPGFVGPRCEGDI 299



 Score = 35.1 bits (77), Expect = 7e-04
 Identities = 10/40 (25%), Positives = 24/40 (60%)
 Frame = -1

Query: 354 QVSRCSPSPCRNNASCVESAADVTCVCRDGYTGKTYSCDI 235
           +++ C  +PC+N  +C++     +C C  G+ G+  +C++
Sbjct: 184 EINECDSAPCQNGGTCLDLIGSYSCKCPKGFQGQ--NCEL 221



 Score = 35.1 bits (77), Expect = 7e-04
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -1

Query: 351 VSRCSPSPCRNNASCVESAADVTCVCRDGYTGKTYSCDI 235
           V  C P+PC+N  +C +     +C C  G  G  Y C+I
Sbjct: 223 VDDCKPNPCQNGGTCHDLVNSFSCSCPSGTLG--YICEI 259



 Score = 34.3 bits (75), Expect = 0.001
 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = -1

Query: 357 DQVSRCSPSPCRN-NASCVESAADVTCVCRDGYTGKTYSCDI 235
           D ++ C  +PC++ +A C +   D  C C   +TGK  +C+I
Sbjct: 415 DTINECDSNPCKHLDAICQDKLGDYACYCPPKHTGK--NCEI 454



 Score = 33.1 bits (72), Expect = 0.003
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = -1

Query: 342 CSPSPCRNNASCVESAADVTCVCRDGYTG 256
           C+ + C N  +C++      C C+ G+TG
Sbjct: 27  CTETSCMNGGTCIDGINSYICTCKPGFTG 55



 Score = 28.7 bits (61), Expect = 0.064
 Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = -1

Query: 351 VSRCSPSPCRNNAS--CVESAADVTCVCRDGYTGK 253
           ++ C  +PC N  +  CV+   D  C C+ G+ G+
Sbjct: 299 INECLSNPCSNAGTLDCVQLVNDYHCNCKLGFMGR 333



 Score = 27.9 bits (59), Expect = 0.11
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -3

Query: 451 NGAAXYTAQSDYYCHCAPGWTGQE 380
           NGA      + Y CHC  G+TG++
Sbjct: 72  NGATCQDHTTHYTCHCPYGYTGKD 95



 Score = 26.6 bits (56), Expect = 0.26
 Identities = 14/47 (29%), Positives = 18/47 (38%)
 Frame = -3

Query: 526 SAPVGFSGHQXXXXXXXXXXXXXXGNGAAXYTAQSDYYCHCAPGWTG 386
           + P+GFSG                 NG       + Y C C PG+TG
Sbjct: 10  TCPLGFSGINCQTNDEDCTETSCM-NGGTCIDGINSYICTCKPGFTG 55



 Score = 26.6 bits (56), Expect = 0.26
 Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
 Frame = -3

Query: 451 NGAAXYTAQSDYYCHCAPGWTGQ--ELHAASCQ 359
           N A     ++ Y C C  GWTG+  ++   SC+
Sbjct: 110 NQATCVQNKNQYQCLCGVGWTGKVCDVEMVSCK 142



 Score = 26.2 bits (55), Expect = 0.34
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = -1

Query: 321 NNASCVESAADVTCVCRDGYTGKTYSCDI 235
           NN +C +      C C DGY+G     +I
Sbjct: 157 NNGTCEDIGNSHRCHCSDGYSGSYCQTEI 185



 Score = 23.0 bits (47), Expect = 3.2
 Identities = 11/33 (33%), Positives = 14/33 (42%), Gaps = 2/33 (6%)
 Frame = -3

Query: 451 NGAAXYTAQSDYYCHCAPGWTGQ--ELHAASCQ 359
           NG         Y C C  G+ GQ  EL+   C+
Sbjct: 195 NGGTCLDLIGSYSCKCPKGFQGQNCELNVDDCK 227



 Score = 22.6 bits (46), Expect = 4.2
 Identities = 9/24 (37%), Positives = 11/24 (45%)
 Frame = -3

Query: 421 DYYCHCAPGWTGQELHAASCQGPG 350
           DY C+C P  TG+         PG
Sbjct: 438 DYACYCPPKHTGKNCEIYDRGFPG 461



 Score = 21.8 bits (44), Expect = 7.4
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = -3

Query: 424 SDYYCHCAPGWTGQ 383
           +DY+C+C  G+ G+
Sbjct: 320 NDYHCNCKLGFMGR 333


>EF222295-1|ABN79655.1|  146|Tribolium castaneum arginine
           vasopressin-like peptide protein.
          Length = 146

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -3

Query: 406 CAPGWTGQELHAASCQGP 353
           C PG +GQ    + C GP
Sbjct: 48  CGPGQSGQCFGPSICCGP 65


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -3

Query: 436 YTAQSDYYCHCAPGW 392
           Y+A SD + HC  G+
Sbjct: 596 YSAASDAFTHCPEGF 610


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -3

Query: 436 YTAQSDYYCHCAPGW 392
           Y+A SD + HC  G+
Sbjct: 829 YSAASDAFTHCPEGF 843


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -3

Query: 436 YTAQSDYYCHCAPGW 392
           Y+A SD + HC  G+
Sbjct: 829 YSAASDAFTHCPEGF 843


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,844
Number of Sequences: 336
Number of extensions: 2005
Number of successful extensions: 30
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 24513621
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)