Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP01_T7_N23
         (885 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0303 + 14108902-14109208,14109259-14109286,14110120-141105...    31   1.2  
12_01_0951 - 9471391-9471597,9471857-9471966,9473173-9473278,947...    30   2.1  
04_04_1030 - 30249160-30250403,30250787-30251666                       30   2.1  
10_02_0085 - 5093036-5094285,5094737-5095255,5098698-5099373           29   5.0  
06_03_1317 - 29275262-29276424,29278476-29279352                       29   6.6  
04_01_0148 + 1710369-1710531,1711821-1712279,1712769-1712915,171...    29   6.6  
03_06_0015 - 31036091-31036202,31037839-31037916,31038408-310386...    28   8.7  

>04_03_0303 +
           14108902-14109208,14109259-14109286,14110120-14110505,
           14111071-14111604,14112362-14112445,14112933-14113516
          Length = 640

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
 Frame = -1

Query: 366 AARDQVS-RCSP--SPCRNNASCVESAADVTCVCRDGYTGKTYS 244
           A RD+ S  C+   S C +N S   S A   C C DGY G  Y+
Sbjct: 189 AKRDKSSYACASKHSRCDDNLSFTASRAGYLCKCTDGYQGNPYA 232


>12_01_0951 -
           9471391-9471597,9471857-9471966,9473173-9473278,
           9474719-9475060,9475598-9475647,9476745-9477717
          Length = 595

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 18/44 (40%), Positives = 21/44 (47%)
 Frame = -1

Query: 378 CTQRAARDQVSRCSPSPCRNNASCVESAADVTCVCRDGYTGKTY 247
           C +  AR +  R S S CRN A+   S     C C DGY G  Y
Sbjct: 278 CPKDPARSEC-RSSNSFCRNIANMYRSG--YVCKCDDGYQGNPY 318



 Score = 30.3 bits (65), Expect = 2.1
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = -3

Query: 427 QSDYYCHCAPGWTGQELHAASCQGPG 350
           +S Y C C  G+ G       CQGPG
Sbjct: 302 RSGYVCKCDDGYQGNPYLTGGCQGPG 327


>04_04_1030 - 30249160-30250403,30250787-30251666
          Length = 707

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 13/29 (44%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
 Frame = -1

Query: 327 CRNNASC--VESAADVTCVCRDGYTGKTY 247
           C+ N+ C  VE  A   C C  GYTG  Y
Sbjct: 261 CKENSYCYEVEDGAGYRCNCSGGYTGNPY 289


>10_02_0085 - 5093036-5094285,5094737-5095255,5098698-5099373
          Length = 814

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 3/31 (9%)
 Frame = -1

Query: 321 NNASCVESA-ADV--TCVCRDGYTGKTYSCD 238
           N++SCV S   DV   C C DGY G  Y  D
Sbjct: 189 NHSSCVSSQYIDVGYACRCNDGYVGNPYIMD 219


>06_03_1317 - 29275262-29276424,29278476-29279352
          Length = 679

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -1

Query: 321 NNASCVESAADVTCVCRDGYTGKTY 247
           +++ CV+ A    C C  GYTG  Y
Sbjct: 262 DHSVCVDGAPGYVCNCSQGYTGNPY 286


>04_01_0148 +
           1710369-1710531,1711821-1712279,1712769-1712915,
           1713004-1714170,1714378-1714430
          Length = 662

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 19/48 (39%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
 Frame = -1

Query: 387 VKNCTQRAAR-DQVSRCSPSPCRNNASCVESAADVTCVCRDGYTGKTY 247
           V N T   AR DQ+S    S   NN+ CV  +    C C  GY G  Y
Sbjct: 157 VANQTCHTARTDQLSYACVS---NNSLCVHRSTGYHCKCSLGYGGNAY 201


>03_06_0015 -
           31036091-31036202,31037839-31037916,31038408-31038655,
           31038744-31038792,31038919-31039890,31040059-31040894
          Length = 764

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -1

Query: 321 NNASCVESAADVTCVCRDGYTGKTYS 244
           +NASC++ A ++T    DGY  +T S
Sbjct: 17  SNASCLDHAEEITSYDTDGYDDRTIS 42


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,525,412
Number of Sequences: 37544
Number of extensions: 226779
Number of successful extensions: 594
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 546
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 594
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2503236492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)