Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_T7_N22
(805 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_47198| Best HMM Match : Tubulin (HMM E-Value=0) 39 0.005
SB_44780| Best HMM Match : 7tm_1 (HMM E-Value=1.2e-34) 39 0.005
SB_39308| Best HMM Match : Tubulin (HMM E-Value=0) 39 0.005
SB_17879| Best HMM Match : Tubulin (HMM E-Value=0) 39 0.005
SB_17651| Best HMM Match : Tubulin_C (HMM E-Value=4.7e-28) 39 0.005
SB_25311| Best HMM Match : Tubulin (HMM E-Value=0) 36 0.038
SB_17880| Best HMM Match : Tubulin_C (HMM E-Value=0) 31 0.83
SB_1209| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_2016| Best HMM Match : HEAT (HMM E-Value=8.6e-07) 28 7.7
>SB_47198| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 446
Score = 38.7 bits (86), Expect = 0.005
Identities = 18/24 (75%), Positives = 18/24 (75%)
Frame = -2
Query: 720 AMFRRKAFLHWYXRRGAWXEMEFT 649
AMFRRKAFLHWY G EMEFT
Sbjct: 387 AMFRRKAFLHWYTGEG-MDEMEFT 409
Score = 37.1 bits (82), Expect = 0.017
Identities = 16/16 (100%), Positives = 16/16 (100%)
Frame = -3
Query: 647 EAESNMNDLVSEYQQY 600
EAESNMNDLVSEYQQY
Sbjct: 410 EAESNMNDLVSEYQQY 425
>SB_44780| Best HMM Match : 7tm_1 (HMM E-Value=1.2e-34)
Length = 747
Score = 38.7 bits (86), Expect = 0.005
Identities = 18/24 (75%), Positives = 18/24 (75%)
Frame = -2
Query: 720 AMFRRKAFLHWYXRRGAWXEMEFT 649
AMFRRKAFLHWY G EMEFT
Sbjct: 152 AMFRRKAFLHWYTGEG-MDEMEFT 174
Score = 35.1 bits (77), Expect = 0.067
Identities = 22/52 (42%), Positives = 28/52 (53%)
Frame = -3
Query: 755 ELFKRIFGTVYPLCSGARLSCIGTPGEGHGXRWSSPEAESNMNDLVSEYQQY 600
ELFKR+ G + + GEG EAESNM+DL++EYQQY
Sbjct: 141 ELFKRV-GEQFTAMFRRKAFLHWYTGEGMD-EMEFTEAESNMHDLIAEYQQY 190
>SB_39308| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 391
Score = 38.7 bits (86), Expect = 0.005
Identities = 18/24 (75%), Positives = 18/24 (75%)
Frame = -2
Query: 720 AMFRRKAFLHWYXRRGAWXEMEFT 649
AMFRRKAFLHWY G EMEFT
Sbjct: 332 AMFRRKAFLHWYTGEG-MDEMEFT 354
Score = 37.1 bits (82), Expect = 0.017
Identities = 16/16 (100%), Positives = 16/16 (100%)
Frame = -3
Query: 647 EAESNMNDLVSEYQQY 600
EAESNMNDLVSEYQQY
Sbjct: 355 EAESNMNDLVSEYQQY 370
>SB_17879| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 446
Score = 38.7 bits (86), Expect = 0.005
Identities = 18/24 (75%), Positives = 18/24 (75%)
Frame = -2
Query: 720 AMFRRKAFLHWYXRRGAWXEMEFT 649
AMFRRKAFLHWY G EMEFT
Sbjct: 387 AMFRRKAFLHWYTGEG-MDEMEFT 409
Score = 37.1 bits (82), Expect = 0.017
Identities = 16/16 (100%), Positives = 16/16 (100%)
Frame = -3
Query: 647 EAESNMNDLVSEYQQY 600
EAESNMNDLVSEYQQY
Sbjct: 410 EAESNMNDLVSEYQQY 425
>SB_17651| Best HMM Match : Tubulin_C (HMM E-Value=4.7e-28)
Length = 271
Score = 38.7 bits (86), Expect = 0.005
Identities = 18/24 (75%), Positives = 18/24 (75%)
Frame = -2
Query: 720 AMFRRKAFLHWYXRRGAWXEMEFT 649
AMFRRKAFLHWY G EMEFT
Sbjct: 214 AMFRRKAFLHWYTGEG-MDEMEFT 236
Score = 35.1 bits (77), Expect = 0.067
Identities = 22/52 (42%), Positives = 28/52 (53%)
Frame = -3
Query: 755 ELFKRIFGTVYPLCSGARLSCIGTPGEGHGXRWSSPEAESNMNDLVSEYQQY 600
ELFKR+ G + + GEG EAESNM+DL++EYQQY
Sbjct: 203 ELFKRV-GEQFTAMFRRKAFLHWYTGEGMD-EMEFTEAESNMHDLIAEYQQY 252
>SB_25311| Best HMM Match : Tubulin (HMM E-Value=0)
Length = 629
Score = 35.9 bits (79), Expect = 0.038
Identities = 16/30 (53%), Positives = 18/30 (60%)
Frame = -2
Query: 738 FRNSLPAMFRRKAFLHWYXRRGAWXEMEFT 649
F AMFRR+AFLHWY G +EFT
Sbjct: 200 FTEQFAAMFRRRAFLHWYTTEG-MDPLEFT 228
Score = 32.3 bits (70), Expect = 0.47
Identities = 12/15 (80%), Positives = 15/15 (100%)
Frame = -3
Query: 644 AESNMNDLVSEYQQY 600
A+SN+NDL+SEYQQY
Sbjct: 259 ADSNLNDLISEYQQY 273
>SB_17880| Best HMM Match : Tubulin_C (HMM E-Value=0)
Length = 375
Score = 31.5 bits (68), Expect = 0.83
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = -2
Query: 717 MFRRKAFLHWYXRRG 673
MFRR+AFLHWY G
Sbjct: 293 MFRRRAFLHWYTEEG 307
>SB_1209| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 40
Score = 31.1 bits (67), Expect = 1.1
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -3
Query: 743 RIFGTVYPLCSGARLSCIGTPGEGHG 666
R+ G P+ S R+ CIG PG G G
Sbjct: 14 RVLGVRSPVVSAVRMMCIGEPGSGAG 39
>SB_2016| Best HMM Match : HEAT (HMM E-Value=8.6e-07)
Length = 502
Score = 28.3 bits (60), Expect = 7.7
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = +2
Query: 179 NQVQPYKKKDLFPLCDSVTAPRACSAEGLASLRVAVYCNKHSRAALR 319
+++Q L LC SV+ C+ A L ++C + S A LR
Sbjct: 136 SRLQQLASLSLTDLCQSVSGDEGCAVAETAELIALMHCLESSAATLR 182
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,510,099
Number of Sequences: 59808
Number of extensions: 415582
Number of successful extensions: 928
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 883
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 928
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2227723674
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -