Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP01_T7_N22
(805 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) near... 39 0.003
At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) near... 39 0.003
At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly iden... 39 0.003
At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8) ide... 39 0.003
At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly iden... 39 0.003
At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly iden... 39 0.003
At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical t... 39 0.003
At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly iden... 39 0.003
At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly iden... 39 0.003
At5g63890.2 68418.m08022 histidinol dehydrogenase, putative / HD... 29 4.8
At1g16610.2 68414.m01990 arginine/serine-rich protein, putative ... 29 4.8
At1g16610.1 68414.m01989 arginine/serine-rich protein, putative ... 29 4.8
>At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 39.1 bits (87), Expect = 0.003
Identities = 21/38 (55%), Positives = 23/38 (60%), Gaps = 3/38 (7%)
Frame = -2
Query: 753 AVQAHFRN---SLPAMFRRKAFLHWYXRRGAWXEMEFT 649
++Q FR AMFRRKAFLHWY G EMEFT
Sbjct: 373 SIQEMFRRVSEQFTAMFRRKAFLHWYTGEG-MDEMEFT 409
Score = 37.1 bits (82), Expect = 0.014
Identities = 16/16 (100%), Positives = 16/16 (100%)
Frame = -3
Query: 647 EAESNMNDLVSEYQQY 600
EAESNMNDLVSEYQQY
Sbjct: 410 EAESNMNDLVSEYQQY 425
>At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 39.1 bits (87), Expect = 0.003
Identities = 21/38 (55%), Positives = 23/38 (60%), Gaps = 3/38 (7%)
Frame = -2
Query: 753 AVQAHFRN---SLPAMFRRKAFLHWYXRRGAWXEMEFT 649
++Q FR AMFRRKAFLHWY G EMEFT
Sbjct: 373 SIQEMFRRVSEQFTAMFRRKAFLHWYTGEG-MDEMEFT 409
Score = 37.1 bits (82), Expect = 0.014
Identities = 16/16 (100%), Positives = 16/16 (100%)
Frame = -3
Query: 647 EAESNMNDLVSEYQQY 600
EAESNMNDLVSEYQQY
Sbjct: 410 EAESNMNDLVSEYQQY 425
>At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly
identical to SP|P24636 Tubulin beta-4 chain {Arabidopsis
thaliana}
Length = 444
Score = 39.1 bits (87), Expect = 0.003
Identities = 21/38 (55%), Positives = 23/38 (60%), Gaps = 3/38 (7%)
Frame = -2
Query: 753 AVQAHFRN---SLPAMFRRKAFLHWYXRRGAWXEMEFT 649
++Q FR AMFRRKAFLHWY G EMEFT
Sbjct: 373 SIQEMFRRVSEQFTAMFRRKAFLHWYTGEG-MDEMEFT 409
Score = 35.9 bits (79), Expect = 0.031
Identities = 15/16 (93%), Positives = 16/16 (100%)
Frame = -3
Query: 647 EAESNMNDLVSEYQQY 600
EAESNMNDLV+EYQQY
Sbjct: 410 EAESNMNDLVAEYQQY 425
>At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8)
identical to SP|P29516 Tubulin beta-8 chain {Arabidopsis
thaliana}; supporting cDNA gi|15451225|gb|AY054693.1|
Length = 449
Score = 39.1 bits (87), Expect = 0.003
Identities = 21/38 (55%), Positives = 23/38 (60%), Gaps = 3/38 (7%)
Frame = -2
Query: 753 AVQAHFRN---SLPAMFRRKAFLHWYXRRGAWXEMEFT 649
++Q FR AMFRRKAFLHWY G EMEFT
Sbjct: 373 SIQEMFRRVSEQFTAMFRRKAFLHWYTGEG-MDEMEFT 409
Score = 37.1 bits (82), Expect = 0.014
Identities = 16/16 (100%), Positives = 16/16 (100%)
Frame = -3
Query: 647 EAESNMNDLVSEYQQY 600
EAESNMNDLVSEYQQY
Sbjct: 410 EAESNMNDLVSEYQQY 425
>At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly
identical to SP|P29514 Tubulin beta-6 chain {Arabidopsis
thaliana}
Length = 449
Score = 39.1 bits (87), Expect = 0.003
Identities = 21/38 (55%), Positives = 23/38 (60%), Gaps = 3/38 (7%)
Frame = -2
Query: 753 AVQAHFRN---SLPAMFRRKAFLHWYXRRGAWXEMEFT 649
++Q FR AMFRRKAFLHWY G EMEFT
Sbjct: 373 SIQEMFRRVSEQFTAMFRRKAFLHWYTGEG-MDEMEFT 409
Score = 37.1 bits (82), Expect = 0.014
Identities = 16/16 (100%), Positives = 16/16 (100%)
Frame = -3
Query: 647 EAESNMNDLVSEYQQY 600
EAESNMNDLVSEYQQY
Sbjct: 410 EAESNMNDLVSEYQQY 425
>At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly
identical to SP|P29517 Tubulin beta-9 chain {Arabidopsis
thaliana}
Length = 444
Score = 39.1 bits (87), Expect = 0.003
Identities = 21/38 (55%), Positives = 23/38 (60%), Gaps = 3/38 (7%)
Frame = -2
Query: 753 AVQAHFRN---SLPAMFRRKAFLHWYXRRGAWXEMEFT 649
++Q FR AMFRRKAFLHWY G EMEFT
Sbjct: 373 SIQEMFRRVSEQFTAMFRRKAFLHWYTGEG-MDEMEFT 409
Score = 35.9 bits (79), Expect = 0.031
Identities = 15/16 (93%), Positives = 16/16 (100%)
Frame = -3
Query: 647 EAESNMNDLVSEYQQY 600
EAESNMNDLV+EYQQY
Sbjct: 410 EAESNMNDLVAEYQQY 425
>At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical to
GB:M84704 SP|P29515 Tubulin beta-7 chain {Arabidopsis
thaliana}
Length = 449
Score = 39.1 bits (87), Expect = 0.003
Identities = 21/38 (55%), Positives = 23/38 (60%), Gaps = 3/38 (7%)
Frame = -2
Query: 753 AVQAHFRN---SLPAMFRRKAFLHWYXRRGAWXEMEFT 649
++Q FR AMFRRKAFLHWY G EMEFT
Sbjct: 373 SIQEMFRRVSEQFTAMFRRKAFLHWYTGEG-MDEMEFT 409
Score = 37.1 bits (82), Expect = 0.014
Identities = 16/16 (100%), Positives = 16/16 (100%)
Frame = -3
Query: 647 EAESNMNDLVSEYQQY 600
EAESNMNDLVSEYQQY
Sbjct: 410 EAESNMNDLVSEYQQY 425
>At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly
identical to SP|P12411 Tubulin beta-1 chain {Arabidopsis
thaliana}
Length = 447
Score = 39.1 bits (87), Expect = 0.003
Identities = 21/38 (55%), Positives = 23/38 (60%), Gaps = 3/38 (7%)
Frame = -2
Query: 753 AVQAHFRN---SLPAMFRRKAFLHWYXRRGAWXEMEFT 649
++Q FR AMFRRKAFLHWY G EMEFT
Sbjct: 374 SIQEMFRRVSEQFTAMFRRKAFLHWYTGEG-MDEMEFT 410
Score = 37.1 bits (82), Expect = 0.014
Identities = 16/16 (100%), Positives = 16/16 (100%)
Frame = -3
Query: 647 EAESNMNDLVSEYQQY 600
EAESNMNDLVSEYQQY
Sbjct: 411 EAESNMNDLVSEYQQY 426
>At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly
identical to SP|P29513 Tubulin beta-5 chain {Arabidopsis
thaliana}
Length = 449
Score = 39.1 bits (87), Expect = 0.003
Identities = 21/38 (55%), Positives = 23/38 (60%), Gaps = 3/38 (7%)
Frame = -2
Query: 753 AVQAHFRN---SLPAMFRRKAFLHWYXRRGAWXEMEFT 649
++Q FR AMFRRKAFLHWY G EMEFT
Sbjct: 374 SIQEMFRRVSEQFTAMFRRKAFLHWYTGEG-MDEMEFT 410
Score = 35.9 bits (79), Expect = 0.031
Identities = 15/16 (93%), Positives = 16/16 (100%)
Frame = -3
Query: 647 EAESNMNDLVSEYQQY 600
EAESNMNDLV+EYQQY
Sbjct: 411 EAESNMNDLVAEYQQY 426
>At5g63890.2 68418.m08022 histidinol dehydrogenase, putative / HDH,
putative strong similarity to SP|P24226 Histidinol
dehydrogenase, chloroplast precursor (EC 1.1.1.23) (HDH)
{Brassica oleracea var.capitata}; contains Pfam profile
PF00815: histidinol dehydrogenase
Length = 466
Score = 28.7 bits (61), Expect = 4.8
Identities = 16/31 (51%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
Frame = +2
Query: 629 SCYSQPRVNSISXHAPRRXYQC--KKALRLN 715
S S PR+ SIS HAPR+ Y C K+ RL+
Sbjct: 9 SLLSSPRI-SISTHAPRKGYVCCSMKSYRLS 38
>At1g16610.2 68414.m01990 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 407
Score = 28.7 bits (61), Expect = 4.8
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +2
Query: 545 SPAPAPRQTLRPRR-RWPPGTVGTRRQGRSCYSQPRVNSISXHAPRR 682
SP P R++ PRR R PP RR+ RS +P + S +PR+
Sbjct: 300 SPLPLRRRSPPPRRLRSPPRRSPIRRRSRSPIRRPGRSRSSSISPRK 346
>At1g16610.1 68414.m01989 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 414
Score = 28.7 bits (61), Expect = 4.8
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +2
Query: 545 SPAPAPRQTLRPRR-RWPPGTVGTRRQGRSCYSQPRVNSISXHAPRR 682
SP P R++ PRR R PP RR+ RS +P + S +PR+
Sbjct: 307 SPLPLRRRSPPPRRLRSPPRRSPIRRRSRSPIRRPGRSRSSSISPRK 353
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,775,789
Number of Sequences: 28952
Number of extensions: 276315
Number of successful extensions: 701
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 679
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 701
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1824072800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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